Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ED1	47930	2025-09-18	2024-11-15	3.5	3.78	3.45	3.7	0.002	0.49	0.0	0.04	13.06	0.00	2.271	2.96	0.00	2.6	97.4	0.0	-1.17	0.67	0.81	1.84	3.7	0.002	0.53	0.0	0.04	15.48	0.00	2.277	1.82	1.90	3.3	96.7	0.0	-0.26	0.37	0.68	0.82	1.30	15449	2020	14	0	17	0	0	logfile
✔	9KLP	62412	2025-09-18	2024-11-14	2.87	3.52	3.12	3.4	0.007	0.64	0.0	0.05	18.92	0.01	1.830	4.09	0.00	4.4	95.5	0.1	0.59	0.77	0.86	2.72	3.4	0.002	0.52	0.0	0.03	19.72	0.00	1.697	3.33	0.92	3.5	96.5	0.0	1.29	0.34	0.74	0.83	1.90	12569	1268	6	129	6	0	0	logfile
✔	9HEK	52079	2025-09-19	2024-11-14	3.15	2.36	3.11	2.1	0.004	0.77	0.0	0.05	15.99	0.00	2.101	7.52	0.56	3.9	96.1	0.0	-0.85	0.77	0.78	2.10	2.1	0.004	0.68	0.0	0.05	16.83	0.00	2.223	7.03	3.22	4.4	95.6	0.0	-0.63	1.08	0.76	0.78	2.10	22064	2856	17	0	40	0	0	logfile
✔	9HEL	52080	2025-09-17	2024-11-14	3.1	2.44	3.09	2.2	0.003	0.68	0.0	0.05	17.02	0.02	2.117	8.04	0.35	5.0	95.0	0.0	-1.30	0.74	0.78	2.39	2.2	0.004	0.70	0.0	0.05	16.70	0.00	2.225	7.02	4.61	5.0	94.9	0.1	-1.04	0.89	0.75	0.79	2.08	10616	1382	7	0	18	0	0	logfile
✔	9KLN	62410	2025-09-18	2024-11-14	2.55	3.08	2.69	3.0	0.007	0.88	0.0	0.08	21.24	0.02	2.042	7.78	2.00	4.1	95.9	0.1	0.73	0.74	0.86	2.68	3.0	0.003	0.55	0.0	0.04	20.66	0.00	1.919	4.14	3.05	3.0	97.0	0.0	1.62	1.30	0.73	0.85	2.95	13749	1385	5	145	2	8	0	logfile
✔	9KLQ	62413	2025-09-18	2024-11-14	3.11	3.67	3.25	3.5	0.006	0.70	0.0	0.05	19.05	0.01	1.956	7.43	0.00	5.2	94.6	0.2	0.18	0.76	0.82	2.30	3.5	0.003	0.55	0.0	0.03	19.82	0.00	1.938	5.14	1.22	4.5	95.4	0.1	0.99	0.36	0.77	0.83	2.19	13055	1284	5	148	2	0	0	logfile
✔	9HEJ	52078	2025-09-18	2024-11-14	2.82	2.29	2.81	2.0	0.004	0.75	0.0	0.05	15.79	0.01	2.207	7.41	1.92	5.3	94.7	0.0	-1.01	0.77	0.78	2.96	2.0	0.005	0.71	0.0	0.05	16.81	0.00	2.173	7.14	3.54	5.2	94.8	0.0	-0.60	0.38	0.77	0.78	2.62	15177	1963	13	0	21	0	0	logfile
✔	9HE1	52074	2025-09-19	2024-11-13	3.0	3.47	3.06	3.4	0.002	0.43	0.0	0.04	8.80	0.00	1.521	3.83	0.39	2.7	97.3	0.0	0.63	0.63	0.75	2.65	3.4	0.003	0.53	0.0	0.04	12.07	0.00	2.336	3.57	0.79	4.3	95.7	0.0	-0.08	0.56	0.64	0.77	2.32	23241	1511	6	0	0	0	11404	logfile
✘	9HDo	52070	2025-09-17	2024-11-12	2.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1025	8	86	2	0	0	logfile
✔	9HDD	52061	2025-09-18	2024-11-12	3.62	5.09	3.72	4.0	0.011	1.80	0.0	0.08	14.69	0.01	2.527	1.51	0.14	4.4	95.6	0.0	-2.50	0.88	0.77	-0.32	4.1	0.002	0.56	0.0	0.03	16.16	0.00	2.403	6.29	1.52	1.8	97.8	0.4	3.73	0.95	0.87	0.78	-0.32	12556	818	2	0	0	0	6260	logfile
✔	9KJC	62366	2025-09-17	2024-11-12	3.6	3.85	3.65	3.8	0.003	0.68	0.0	0.04	14.66	0.01	2.206	9.65	0.63	7.7	92.3	0.0	-0.15	0.64	0.77	0.95	3.8	0.006	0.76	0.0	0.05	16.06	0.00	2.444	10.20	1.79	8.3	91.6	0.1	-0.27	0.55	0.64	0.81	0.62	9015	1168	2	0	1	0	0	logfile
✘	9HDR	52073	2025-09-17	2024-11-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12202	1263	8	86	2	0	0	logfile
✔	9HDQ	52072	2025-09-17	2024-11-12	2.45	2.20	2.50	2.4	0.007	1.15	0.0	0.09	19.15	0.01	2.353	1.10	0.00	0.4	99.6	0.0	-1.18	0.66	0.81	4.58	2.3	0.003	0.55	0.0	0.04	20.10	0.00	2.606	3.39	1.17	1.7	98.3	0.0	2.12	3.97	0.68	0.82	3.16	10261	1025	8	85	1	0	0	logfile
✘	9KJT	62375	2025-09-18	2024-11-12	3.84	4.76	3.86	4.1	0.006	0.66	0.0	0.04	16.58	0.00	2.198	16.72	0.11	5.4	94.6	0.0	1.01	0.93	0.88	1.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16413	2130	3	0	0	0	0	logfile
✔	9KJU	62377	2025-09-17	2024-11-12	2.7	2.86	2.87	2.8	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.57	0.64	1.90	2.8	0.003	0.72	0.0	0.04	14.92	0.00	2.494	5.98	2.04	7.2	92.7	0.1	1.01	0.70	0.68	0.88	1.57	7398	936	8	0	8	1	0	logfile
✘	9HDP	52071	2025-09-17	2024-11-12	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1025	8	86	2	0	0	logfile
✔	9KK6	62383	2025-09-17	2024-11-12	3.7	3.82	3.73	3.8	0.003	0.62	0.0	0.04	15.11	0.00	2.031	8.58	0.00	9.0	91.0	0.0	1.23	0.65	0.80	1.71	3.8	0.003	0.67	0.0	0.04	17.06	0.00	1.927	7.64	1.99	8.4	91.6	0.0	1.23	0.46	0.65	0.81	1.08	9066	1170	2	0	6	0	0	logfile
✔	9KJR	62372	2025-09-18	2024-11-12	3.86	4.60	—	4.1	0.005	0.63	0.0	0.04	17.74	0.00	2.219	15.63	0.28	6.6	93.4	0.0	0.86	0.93	0.89	1.36	4.1	0.006	0.66	0.0	0.04	18.03	0.00	2.439	11.26	3.31	6.3	93.7	0.0	1.09	0.86	0.93	0.90	1.31	16413	2130	3	0	0	0	0	logfile
✔	9KHV	62357	2025-09-18	2024-11-11	2.55	2.86	2.71	2.8	0.003	0.53	0.0	0.04	18.58	0.00	2.133	6.45	2.65	3.6	96.4	0.0	0.85	0.74	0.84	2.78	2.8	0.003	0.52	0.0	0.04	18.83	0.00	2.490	4.67	2.12	3.0	97.0	0.0	1.82	0.29	0.74	0.84	2.79	19377	2336	4	24	0	0	0	logfile
✔	9EAH	47831	2025-09-17	2024-11-11	3.1	3.37	3.11	3.3	0.002	0.45	0.0	0.04	10.95	0.00	2.254	5.72	0.68	3.6	96.4	0.0	-0.11	0.55	0.82	4.02	3.3	0.003	0.51	0.0	0.04	13.33	0.00	2.594	5.90	1.69	4.8	95.2	0.0	1.01	0.87	0.55	0.82	3.32	5606	702	5	0	2	0	0	logfile

• ← previous
• Page 27 of 639
• next →