Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9EAN	47837	2025-09-17	2024-11-11	2.4	2.52	2.43	4.8	0.006	0.84	0.0	0.05	17.82	0.01	2.091	5.34	2.75	5.5	94.3	0.2	-0.84	0.03	-0.02	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11798	1535	3	0	0	0	0	logfile
✔	9EAo	47838	2025-09-17	2024-11-11	2.6	2.87	2.56	2.9	0.003	0.62	0.0	0.05	17.27	0.01	2.103	4.27	5.19	5.6	94.2	0.2	-1.14	0.41	0.83	3.50	2.9	0.005	0.77	0.0	0.05	17.26	0.01	2.287	3.50	4.09	5.6	94.2	0.2	-1.12	0.19	0.38	0.84	3.47	11798	1534	6	0	3	0	0	logfile
✔	9KHT	62354	2025-09-18	2024-11-11	4.85	3.98	4.76	4.0	0.003	0.62	0.0	0.04	11.15	0.00	2.197	11.57	0.00	4.8	95.1	0.0	-0.71	0.53	0.60	—	3.9	0.004	0.70	0.0	0.04	12.84	0.00	2.404	10.68	0.05	5.2	94.8	0.0	-0.30	0.84	0.59	0.70	—	19960	2737	12	0	0	0	0	logfile
✔	9KHV	62357	2025-09-18	2024-11-11	2.55	2.86	2.71	2.8	0.003	0.53	0.0	0.04	18.58	0.00	2.133	6.45	2.65	3.6	96.4	0.0	0.85	0.74	0.84	2.78	2.8	0.003	0.52	0.0	0.04	18.83	0.00	2.490	4.67	2.12	3.0	97.0	0.0	1.82	0.29	0.74	0.84	2.79	19377	2336	4	24	0	0	0	logfile
✔	9KHZ	62360	2025-09-18	2024-11-11	3.03	3.31	3.10	3.3	0.004	0.69	1.0	0.04	18.78	0.01	1.979	12.56	0.67	7.5	92.0	0.4	-1.93	0.76	0.81	2.44	3.3	0.004	0.83	1.0	0.04	18.78	0.00	2.151	7.62	2.84	6.9	93.0	0.1	-0.46	0.46	0.76	0.80	2.25	19432	2343	6	22	2	0	0	logfile
✔	9EAJ	47833	2025-09-17	2024-11-11	3.2	3.44	3.19	3.4	0.004	0.51	0.0	0.04	12.00	0.00	2.136	7.36	1.78	4.2	95.8	0.0	0.76	0.56	0.81	3.46	3.4	0.004	0.57	0.0	0.04	14.25	0.00	2.575	7.36	2.85	3.3	96.7	0.0	1.07	0.32	0.60	0.83	3.02	5246	662	4	0	0	0	0	logfile
✔	9EAK	47834	2025-09-18	2024-11-11	2.76	3.29	2.83	3.1	0.005	0.80	0.0	0.05	20.18	0.01	2.229	4.47	0.61	4.6	95.4	0.0	-0.95	0.80	0.88	3.97	3.1	0.003	0.54	0.0	0.04	20.38	0.00	2.466	4.99	2.54	3.2	96.8	0.0	0.97	0.44	0.80	0.88	4.00	12879	1356	5	149	1	0	0	logfile
✔	9Ki0	62361	2025-09-18	2024-11-11	2.65	2.91	2.78	2.9	0.004	0.69	0.0	0.04	19.13	0.01	2.030	6.64	2.12	4.0	95.9	0.1	-0.63	0.70	0.83	2.54	2.9	0.003	0.54	0.0	0.04	19.13	0.00	1.838	5.00	3.13	3.1	96.8	0.1	1.33	0.33	0.68	0.83	2.52	19397	2344	6	20	4	0	0	logfile
✔	9KHS	62353	2025-09-17	2024-11-11	4.31	4.32	4.15	4.3	0.005	0.92	0.0	0.05	9.63	0.01	2.248	6.24	0.10	3.7	96.2	0.1	-3.81	0.34	0.42	—	4.3	0.003	0.70	0.0	0.04	12.31	0.00	2.337	7.60	0.00	2.6	97.4	0.0	0.68	2.58	0.60	0.71	—	9327	1179	5	0	0	0	0	logfile
✘	9EAP	47839	2025-09-17	2024-11-11	2.7	2.81	2.69	2.9	0.004	0.73	0.0	0.04	18.58	0.00	2.148	8.42	4.25	7.9	92.0	0.1	-1.48	0.19	0.54	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11883	1534	6	0	3	0	0	logfile
✔	9EAH	47831	2025-09-17	2024-11-11	3.1	3.37	3.11	3.3	0.002	0.45	0.0	0.04	10.95	0.00	2.254	5.72	0.68	3.6	96.4	0.0	-0.11	0.55	0.82	4.02	3.3	0.003	0.51	0.0	0.04	13.33	0.00	2.594	5.90	1.69	4.8	95.2	0.0	1.01	0.87	0.55	0.82	3.32	5606	702	5	0	2	0	0	logfile
✔	9EAi	47832	2025-09-17	2024-11-11	3.1	3.42	3.09	3.4	0.003	0.51	0.0	0.04	10.65	0.00	2.233	6.30	1.37	2.1	97.9	0.0	0.13	0.58	0.83	3.53	3.4	0.003	0.51	0.0	0.04	12.89	0.00	2.612	4.86	3.42	2.7	97.3	0.0	0.61	0.26	0.57	0.83	2.88	5554	687	5	0	4	0	0	logfile
✔	9EAL	47835	2025-09-17	2024-11-11	2.83	3.36	2.95	3.2	0.005	0.90	0.0	0.07	19.86	0.01	2.220	5.07	0.81	3.6	96.4	0.0	-1.36	0.78	0.81	2.94	3.2	0.004	0.58	0.0	0.04	20.40	0.00	2.526	5.69	2.43	3.4	96.6	0.0	0.72	0.61	0.80	0.85	3.39	11438	1156	4	143	0	0	0	logfile
✔	9KHH	62340	2025-09-18	2024-11-10	3.65	4.57	3.59	3.6	0.003	0.67	0.0	0.05	13.84	0.00	1.714	4.27	0.62	4.2	95.8	0.0	0.38	0.65	0.68	1.44	3.7	0.004	0.75	0.0	0.04	14.58	0.00	2.348	11.21	3.25	4.8	95.1	0.1	0.62	1.54	0.69	0.80	2.41	12354	1871	6	0	0	0	0	logfile
✔	9E9X	47820	2025-09-17	2024-11-09	3.2	2.99	3.14	3.2	0.005	0.94	0.0	0.07	16.56	0.00	2.294	13.93	0.00	8.4	91.6	0.0	-3.29	0.40	0.69	2.71	3.2	0.004	0.66	0.0	0.05	17.82	0.00	2.580	12.04	7.33	8.9	91.1	0.0	-3.09	0.51	0.41	0.71	3.15	3143	450	9	0	16	0	0	logfile
✔	9KH5	62332	2025-09-17	2024-11-09	3.74	4.67	2.98	4.3	0.008	0.98	0.0	0.04	17.15	0.01	2.202	28.28	8.97	13.0	87.0	0.0	-4.34	0.48	0.79	0.82	4.3	0.004	0.90	0.0	0.04	16.45	0.01	2.414	13.86	4.22	7.1	92.9	0.0	-0.06	2.17	0.48	0.80	0.58	3526	455	1	0	0	0	0	logfile
✘	9HBX	52033	2025-09-17	2024-11-08	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5261	630	5	22	0	0	0	logfile
✘	9HBY	52034	2025-09-17	2024-11-08	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7976	951	7	35	0	0	0	logfile
✔	9KGK	62321	2025-09-17	2024-11-08	2.63	3.53	2.71	3.4	0.003	0.61	0.0	0.04	12.01	0.00	2.142	7.96	0.00	5.4	94.6	0.0	0.06	0.71	0.81	2.70	3.4	0.004	0.74	0.0	0.05	14.54	0.00	2.278	8.42	1.31	6.4	93.6	0.0	-0.20	1.13	0.65	0.79	2.69	7556	973	3	0	0	0	0	logfile
✘	9HBU	52030	2025-09-17	2024-11-08	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5530	629	4	37	0	0	0	logfile

• ← previous
• Page 28 of 639
• next →