Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9UT9	64485	2025-09-17	2025-05-03	3.18	3.90	3.31	3.7	0.004	0.60	0.0	0.04	16.57	0.00	2.192	4.71	0.23	7.4	92.5	0.1	-1.60	0.86	0.85	2.96	3.7	0.003	0.57	0.0	0.04	16.55	0.00	2.543	2.68	1.14	3.9	96.0	0.1	0.19	0.68	0.83	0.85	2.05	7958	1004	2	0	0	0	0	logfile
✔	9UTA	64486	2025-09-17	2025-05-03	3.77	4.38	3.89	4.2	0.006	0.83	0.0	0.04	16.78	0.01	2.186	11.71	0.19	9.2	90.8	0.0	-1.45	0.65	0.70	0.52	4.3	0.005	1.27	1.0	0.04	17.52	0.01	2.098	9.28	3.85	4.5	95.5	0.0	1.09	1.27	0.64	0.73	0.39	4701	602	2	0	0	0	0	logfile
✔	9UTB	64487	2025-09-18	2025-05-03	3.59	4.25	3.68	3.9	0.003	0.64	0.0	0.04	16.65	0.01	2.074	15.99	0.15	7.6	92.3	0.1	-1.11	0.73	0.69	1.17	4.0	0.003	0.82	0.0	0.05	17.68	0.00	2.422	14.54	4.37	4.9	94.9	0.2	-0.25	0.96	0.75	0.74	0.82	12471	1584	3	0	2	0	0	logfile
✔	9UT8	64484	2025-09-18	2025-05-03	3.41	2.28	3.49	2.0	0.003	0.61	0.0	0.04	16.77	0.01	2.029	5.99	0.15	5.1	94.9	0.1	-0.85	0.74	0.72	1.92	2.0	0.003	0.63	0.0	0.04	17.36	0.00	2.384	4.52	3.56	4.9	95.1	0.0	-0.09	0.46	0.74	0.73	1.72	12214	1552	2	0	0	0	0	logfile
✔	9R2Q	53537	2025-09-18	2025-04-30	3.2	3.42	3.20	3.2	0.007	1.02	1.0	0.07	25.24	0.01	2.281	1.10	0.44	1.3	98.7	0.0	0.19	0.76	0.74	3.21	3.2	0.003	0.60	0.0	0.04	25.73	0.00	2.459	5.85	1.60	1.2	98.8	0.0	2.77	1.08	0.83	0.89	2.78	15855	1552	14	284	0	0	0	logfile
✔	9oFU	70443	2025-09-18	2025-04-30	3.9	4.14	4.19	4.1	0.004	0.63	0.0	0.04	20.09	0.00	2.271	18.43	0.00	5.4	94.6	0.0	-0.39	0.62	0.66	1.04	4.1	0.003	0.57	0.0	0.04	21.23	0.00	2.193	12.08	2.64	5.1	94.9	0.0	-0.29	1.35	0.65	0.71	0.86	18644	1066	6	66	0	0	8591	logfile
✔	9oG0	70448	2025-09-18	2025-04-30	3.64	3.89	3.68	3.8	0.002	0.47	0.0	0.04	10.75	0.00	2.198	7.90	3.16	5.1	94.8	0.1	1.43	0.57	0.61	1.48	3.8	0.003	0.70	0.0	0.04	14.27	0.00	2.373	10.52	2.78	5.7	94.2	0.1	1.12	0.88	0.60	0.69	1.11	17976	2248	6	0	0	0	0	logfile
✔	9R2P	53536	2025-09-18	2025-04-30	4.18	5.80	4.28	4.1	0.006	0.91	0.0	0.06	24.60	0.01	2.509	0.34	0.14	1.4	98.6	0.0	0.58	0.84	0.81	—	4.1	0.003	0.61	0.0	0.04	23.70	0.00	2.350	8.78	0.00	1.4	98.6	0.0	1.96	1.19	0.85	0.84	—	15460	1559	14	262	0	0	0	logfile
✔	9R2H	53530	2025-09-17	2025-04-30	2.6	2.55	2.55	2.6	0.011	2.00	6.0	0.12	11.47	0.01	2.571	0.00	0.00	4.6	95.4	0.0	-3.09	0.40	0.80	5.26	2.6	0.002	0.59	0.0	0.05	16.69	0.00	2.332	2.64	2.64	3.7	96.3	0.0	-2.95	2.86	0.45	0.87	4.58	5316	357	3	0	0	0	2667	logfile
✔	9R2F	53527	2025-09-17	2025-04-30	2.8	3.07	2.81	3.2	0.011	2.27	4.0	0.13	11.01	0.01	2.553	0.00	0.27	10.2	89.8	0.0	-3.55	0.44	0.82	5.74	3.2	0.003	0.80	0.0	0.05	15.46	0.00	2.285	5.96	1.34	7.1	92.9	0.0	-2.94	0.98	0.39	0.84	4.21	6720	432	6	0	0	0	3426	logfile
✔	9R2M	53532	2025-09-18	2025-04-30	3.5	3.57	—	2.2	0.003	0.55	0.0	0.05	21.34	0.00	2.201	1.45	0.43	3.1	96.8	0.1	-2.78	0.86	0.76	4.09	2.2	0.004	0.61	0.0	0.04	24.38	0.00	2.408	6.31	1.88	2.1	97.9	0.0	1.47	0.88	0.88	0.80	2.47	15971	1561	14	286	0	0	0	logfile
✔	9oF0	70416	2025-09-17	2025-04-29	3.6	3.85	3.60	3.8	0.004	0.59	0.0	0.04	20.15	0.00	2.131	8.88	0.00	1.8	98.2	0.0	0.43	0.72	0.80	1.93	3.8	0.005	0.59	0.0	0.04	21.22	0.00	2.448	10.84	1.11	3.2	96.8	0.0	0.44	1.00	0.74	0.80	1.50	10236	582	4	42	0	0	4664	logfile
✔	9R21	53519	2025-09-17	2025-04-29	2.56	2.82	2.58	2.9	0.012	2.09	8.0	0.10	16.73	0.02	1.968	11.92	4.58	2.5	97.5	0.0	-4.09	0.68	0.88	4.98	2.9	0.003	0.50	0.0	0.04	15.24	0.00	2.631	8.34	1.56	0.4	99.6	0.0	3.09	0.39	0.67	0.86	3.68	10231	1180	15	0	81	97	0	logfile
✔	9R22	53520	2025-09-17	2025-04-29	2.48	2.63	2.48	2.7	0.014	1.88	17.0	0.11	14.57	0.02	1.941	8.85	1.99	1.4	98.6	0.0	-2.26	0.69	0.90	3.76	2.7	0.002	0.51	0.0	0.04	13.13	0.00	2.562	5.90	1.77	1.0	99.0	0.0	2.87	0.90	0.68	0.88	2.14	9643	1150	15	0	40	105	0	logfile
✔	9R23	53521	2025-09-17	2025-04-29	2.81	3.05	2.82	3.1	0.011	1.78	1.0	0.08	14.81	0.02	2.157	9.38	3.14	1.4	98.6	0.0	-2.96	0.67	0.89	4.51	3.1	0.003	0.47	0.0	0.04	14.63	0.00	2.581	5.92	1.57	0.3	99.7	0.0	3.73	0.46	0.66	0.87	3.88	10039	1175	15	0	71	45	0	logfile
✔	9oF2	70418	2025-09-18	2025-04-29	3.7	4.03	3.71	4.0	0.003	0.50	0.0	0.04	21.04	0.00	2.174	10.17	0.00	4.0	96.0	0.0	0.76	0.78	0.79	2.22	4.0	0.004	0.52	0.0	0.04	20.35	0.00	2.233	9.66	2.03	6.5	93.5	0.0	-0.01	0.89	0.78	0.83	2.46	18914	1115	6	54	0	0	8765	logfile
✔	9oDB	70353	2025-09-17	2025-04-26	4.0	4.29	3.84	4.1	0.007	1.21	0.0	0.06	10.69	0.01	2.208	1.47	0.00	5.0	95.0	0.0	-0.09	0.69	0.73	—	4.1	0.004	0.93	0.0	0.05	15.64	0.01	2.466	18.04	3.45	7.2	92.8	0.0	-1.22	1.15	0.70	0.76	—	4862	631	8	0	2	0	0	logfile
✔	9UoK	64380	2025-09-17	2025-04-25	3.05	3.48	3.02	3.4	0.003	0.73	0.0	0.04	15.03	0.00	2.496	4.90	0.60	5.0	95.0	0.0	-1.40	0.67	0.80	3.08	3.5	0.004	0.67	0.0	0.04	15.75	0.00	2.556	5.84	3.60	6.2	93.7	0.1	-1.40	0.38	0.68	0.82	2.63	5851	752	4	0	0	0	0	logfile
✔	9R04	53478	2025-09-18	2025-04-24	4.2	4.25	3.96	2.7	0.008	1.17	0.0	0.06	25.01	0.01	2.101	0.77	0.58	2.1	97.8	0.1	-0.06	0.78	0.75	—	2.7	0.004	0.66	0.0	0.04	24.77	0.00	2.259	9.21	0.00	1.0	99.0	0.0	2.24	2.03	0.78	0.77	—	15855	1552	14	284	0	0	0	logfile
✔	9oC4	70308	2025-09-17	2025-04-23	2.1	2.23	2.18	2.2	0.003	0.56	0.0	0.04	16.37	0.01	2.036	5.82	0.79	2.2	97.8	0.0	1.02	0.67	0.86	4.42	2.2	0.002	0.54	0.0	0.04	16.54	0.00	2.011	5.06	1.40	1.9	98.1	0.0	1.87	0.97	0.66	0.86	4.22	11068	1455	9	0	7	90	0	logfile

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