Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9KDF	62274	2025-09-17	2024-11-03	3.3	2.46	—	2.9	0.007	0.74	0.0	0.04	14.53	0.01	1.213	10.13	0.25	4.1	95.9	0.0	0.94	0.68	0.63	1.43	2.9	0.003	0.64	0.0	0.04	17.10	0.00	1.274	10.13	2.74	3.9	96.1	0.0	1.51	0.52	0.70	0.66	0.89	7399	917	5	0	7	0	0	logfile
✔	9KCH	62251	2025-09-18	2024-11-01	4.19	4.56	4.27	4.4	0.004	0.79	0.0	0.04	14.03	0.01	2.210	7.25	0.11	4.5	95.3	0.2	0.28	0.67	0.73	—	4.4	0.003	0.56	0.0	0.04	14.35	0.00	2.181	10.23	0.00	4.8	95.2	0.0	1.22	0.97	0.67	0.74	—	18473	1161	8	0	0	0	9352	logfile
✔	9E7J	47678	2025-09-17	2024-11-01	2.98	3.23	2.97	3.3	0.011	0.90	0.0	0.05	14.35	0.00	2.493	11.05	0.00	2.8	97.2	0.0	-0.61	0.60	0.76	3.17	3.3	0.004	0.67	0.0	0.04	16.10	0.00	2.663	10.07	1.27	0.0	100.0	0.0	2.82	0.77	0.58	0.77	3.23	3112	440	4	0	0	0	0	logfile
✔	9KC9	62246	2025-09-18	2024-11-01	3.1	3.32	2.95	3.4	0.003	0.59	0.0	0.04	18.10	0.00	2.239	4.25	0.61	3.7	96.3	0.0	0.26	0.64	0.86	1.81	3.4	0.003	0.50	0.0	0.04	18.10	0.00	2.482	2.88	2.57	4.7	95.3	0.0	0.52	0.90	0.64	0.87	1.95	15005	1825	10	0	15	0	0	logfile
✔	9KCA	62247	2025-09-18	2024-11-01	3.18	3.39	3.18	3.4	0.005	0.65	0.0	0.04	17.73	0.00	2.238	4.01	0.24	4.8	95.2	0.0	-0.89	0.68	0.89	2.17	3.4	0.004	0.57	0.0	0.04	17.85	0.00	2.492	2.37	2.26	5.5	94.5	0.0	-0.02	0.22	0.69	0.90	1.89	15005	1825	10	0	15	0	0	logfile
✔	9H9i	51965	2025-09-18	2024-10-31	3.2	4.27	3.18	2.4	0.004	0.64	0.0	0.04	21.31	0.01	1.916	10.94	0.00	2.6	97.4	0.0	-0.39	0.85	0.78	1.86	2.4	0.009	0.81	0.0	0.04	21.23	0.01	1.757	12.14	2.29	3.9	96.1	0.0	0.31	0.51	0.90	0.87	1.71	18959	1102	13	477	50	0	0	logfile
✔	9H9K	51967	2025-09-18	2024-10-31	3.8	5.16	3.76	2.8	0.007	0.89	0.0	0.06	22.14	0.01	1.872	28.20	0.33	4.0	96.0	0.0	-1.55	0.73	0.58	0.56	2.9	0.002	0.60	0.0	0.03	21.66	0.00	1.947	11.87	1.43	3.3	96.7	0.0	0.20	0.78	0.81	0.70	-0.20	18869	1091	15	478	31	0	0	logfile
✔	9H9M	51969	2025-09-18	2024-10-31	3.1	4.05	3.01	2.5	0.004	0.71	0.0	0.04	21.29	0.00	1.930	8.50	0.00	1.6	98.4	0.0	-0.31	0.86	0.80	2.00	2.6	0.008	0.78	0.0	0.04	21.14	0.00	1.766	10.41	2.07	3.0	97.0	0.0	0.44	0.61	0.91	0.88	2.06	18485	1100	12	456	43	0	0	logfile
✔	9KBF	62223	2025-09-17	2024-10-30	3.74	3.96	3.77	3.9	0.004	0.64	0.0	0.05	14.54	0.00	2.199	6.95	0.20	7.4	92.6	0.0	-1.16	0.71	0.80	1.76	3.9	0.005	0.66	0.0	0.05	16.84	0.00	2.564	13.67	2.55	6.7	93.3	0.0	-0.25	0.75	0.72	0.81	1.44	4587	569	2	0	0	0	0	logfile
✔	9KBH	62225	2025-09-18	2024-10-30	3.3	3.63	3.49	3.5	0.006	0.76	0.0	0.04	16.26	0.00	2.103	5.77	0.76	6.7	92.8	0.5	0.26	0.76	0.83	1.57	3.5	0.002	0.56	0.0	0.04	15.83	0.00	1.966	4.37	1.10	6.0	93.8	0.3	0.61	0.37	0.76	0.85	1.72	13763	1737	13	6	10	0	0	logfile
✔	9E6N	47573	2025-09-18	2024-10-30	2.8	3.68	2.85	3.4	0.003	0.50	0.0	0.04	14.95	0.00	1.976	4.58	0.41	1.4	98.6	0.0	0.67	0.74	0.85	3.01	3.4	0.003	0.60	0.0	0.04	15.93	0.00	1.932	4.49	1.23	1.2	98.8	0.0	1.41	0.40	0.72	0.83	2.50	16522	2085	18	18	12	0	0	logfile
✔	9E6H	47565	2025-09-17	2024-10-30	2.84	3.49	2.79	3.2	0.014	0.99	0.0	0.05	19.32	0.00	2.087	3.06	0.00	1.6	98.4	0.0	0.47	0.80	0.77	4.47	3.2	0.003	0.85	0.0	0.05	14.62	0.00	2.065	5.36	0.36	1.5	98.5	0.0	0.81	1.41	0.82	0.85	5.30	8106	978	16	0	52	0	0	logfile
✔	9E6L	47572	2025-09-18	2024-10-30	3.3	4.20	3.38	3.8	0.002	0.50	0.0	0.04	14.12	0.00	1.753	5.38	0.00	1.3	98.6	0.0	1.86	0.71	0.87	2.77	3.7	0.003	0.54	0.0	0.04	14.51	0.00	1.967	4.08	0.23	1.3	98.7	0.0	2.07	0.31	0.72	0.89	2.57	16587	2094	18	18	18	0	0	logfile
✔	9KBD	62222	2025-09-17	2024-10-30	3.7	3.92	3.70	3.9	0.003	0.60	0.0	0.04	15.30	0.00	2.236	7.25	0.17	4.1	95.9	0.0	-1.05	0.73	0.78	1.71	3.9	0.006	0.69	0.0	0.04	17.09	0.00	2.398	13.52	1.94	4.7	95.3	0.0	0.12	0.76	0.72	0.73	1.62	10728	1318	4	0	0	0	0	logfile
✔	9E6D	47556	2025-09-19	2024-10-29	3.28	4.01	3.30	3.7	0.006	0.92	0.0	0.05	13.43	0.01	2.253	3.39	0.00	2.5	97.5	0.0	-0.20	0.73	0.80	3.08	3.7	0.003	0.61	0.0	0.04	13.21	0.00	2.426	7.62	0.37	1.9	98.1	0.0	0.85	1.21	0.75	0.82	3.06	24380	1460	10	0	30	0	12060	logfile
✔	9KAP	62213	2025-09-17	2024-10-29	3.2	3.06	1.91	3.3	0.088	3.28	0.0	0.17	19.33	0.02	2.177	26.58	0.00	0.0	100.0	0.0	-2.23	0.34	0.62	5.98	3.2	0.129	5.88	13.0	0.31	27.23	0.03	1.791	14.41	13.33	0.0	100.0	0.0	-3.38	0.79	0.42	0.79	2.62	804	60	24	0	12	0	0	logfile
✔	9E6B	47554	2025-09-19	2024-10-29	3.13	3.92	3.22	3.7	0.006	0.94	0.0	0.05	13.37	0.01	2.253	4.14	0.00	4.5	95.5	0.0	-0.70	0.65	0.74	4.01	3.7	0.003	0.56	0.0	0.04	13.13	0.00	2.404	5.06	0.22	2.0	98.0	0.0	0.80	0.31	0.66	0.75	4.08	24315	1460	10	0	35	0	11950	logfile
✔	9E5G	47526	2025-09-18	2024-10-28	3.07	3.27	3.05	3.3	0.003	0.50	2.0	0.04	15.87	0.00	2.253	5.55	0.42	2.4	97.4	0.2	1.08	0.47	0.66	2.45	3.3	0.002	0.46	0.0	0.04	15.98	0.00	2.586	3.58	2.51	2.6	97.3	0.2	1.29	0.65	0.70	0.86	4.03	9927	1318	17	0	6	69	0	logfile
✔	9H80	51916	2025-09-18	2024-10-28	2.5	3.43	2.64	3.1	0.004	0.68	0.0	0.04	18.38	0.01	2.129	2.61	0.79	2.6	97.4	0.0	0.60	0.83	0.87	3.95	3.1	0.005	0.62	0.0	0.04	18.39	0.00	2.453	5.14	2.04	2.0	98.0	0.0	0.81	1.10	0.78	0.88	3.82	17742	2239	26	0	27	0	0	logfile
✘	9K9T	62198	2025-09-18	2024-10-27	2.96	2.65	3.09	1.9	0.003	0.68	0.0	0.05	15.46	0.00	2.236	8.51	0.27	4.2	95.7	0.1	-0.22	0.81	0.77	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14139	1624	5	43	0	0	0	logfile

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