Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9H78	51913	2025-09-17	2024-10-27	2.7	2.64	2.72	2.7	0.014	1.95	2.0	0.10	13.77	0.01	2.549	0.06	1.10	1.7	98.1	0.2	0.21	0.76	0.84	4.44	2.7	0.004	0.71	0.0	0.05	17.32	0.00	2.475	3.56	4.96	4.1	95.9	0.0	0.78	0.85	0.74	0.83	3.11	8272	1056	5	0	1	0	0	logfile
✔	9K9L	62193	2025-09-17	2024-10-27	3.66	3.66	3.61	3.7	0.004	0.65	0.0	0.04	28.69	0.01	2.253	10.54	0.80	0.7	99.3	0.0	0.22	0.71	0.75	1.31	3.7	0.003	0.56	0.0	0.03	29.58	0.00	2.571	9.23	2.00	1.5	98.5	0.0	3.16	0.75	0.73	0.78	1.02	9813	599	10	242	0	0	0	logfile
✔	9K9V	62200	2025-09-18	2024-10-27	3.0	2.39	3.07	2.1	0.003	0.61	0.0	0.04	15.07	0.00	2.212	7.55	0.20	4.7	95.2	0.1	0.33	0.73	0.71	2.53	2.0	0.003	0.71	0.0	0.04	17.52	0.00	2.294	7.76	1.47	4.4	95.5	0.1	-0.06	0.48	0.75	0.74	2.03	13869	1624	5	30	0	0	0	logfile
✘	9K9T	62198	2025-09-18	2024-10-27	2.96	2.65	3.09	1.9	0.003	0.68	0.0	0.05	15.46	0.00	2.236	8.51	0.27	4.2	95.7	0.1	-0.22	0.81	0.77	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14139	1624	5	43	0	0	0	logfile
✔	9K9R	62196	2025-09-18	2024-10-27	2.61	2.28	2.69	2.1	0.005	0.63	0.0	0.04	15.94	0.00	2.117	6.03	0.07	4.3	95.4	0.3	0.14	0.78	0.80	3.96	2.1	0.003	0.61	0.0	0.04	18.12	0.00	1.996	5.10	1.85	4.0	95.7	0.2	0.29	0.34	0.80	0.84	3.21	14230	1642	7	38	3	0	0	logfile
✔	9K9U	62199	2025-09-18	2024-10-27	3.08	2.41	3.14	2.1	0.002	0.56	0.0	0.04	15.65	0.00	2.242	7.77	0.20	4.1	95.8	0.1	0.48	0.75	0.74	2.67	2.1	0.003	0.59	0.0	0.04	17.56	0.00	2.522	7.33	2.00	4.5	95.4	0.1	0.30	0.93	0.76	0.78	2.56	13868	1624	5	30	0	0	0	logfile
✔	9H76	51912	2025-09-17	2024-10-26	2.9	3.57	2.91	3.4	0.005	0.59	0.0	0.04	15.75	0.01	2.053	5.90	0.23	1.7	98.3	0.0	2.14	0.68	0.90	3.66	3.4	0.004	0.63	0.0	0.04	16.49	0.00	2.473	6.37	2.96	2.2	97.8	0.0	2.14	0.60	0.64	0.87	3.15	4157	547	3	0	0	0	0	logfile
✔	9H6X	51902	2025-09-18	2024-10-25	2.56	3.40	2.70	3.2	0.004	0.84	0.0	0.05	14.75	0.01	2.364	2.08	0.86	3.5	96.5	0.0	-1.25	0.78	0.84	3.64	3.1	0.003	0.59	0.0	0.04	15.32	0.00	2.264	5.54	1.32	2.8	97.2	0.0	0.17	0.48	0.76	0.82	3.48	13811	1693	2	0	12	0	0	logfile
✔	9H6U	51901	2025-09-17	2024-10-25	3.27	3.40	3.20	3.3	0.014	1.84	2.0	0.09	11.25	0.01	2.058	0.77	0.00	3.3	96.7	0.0	0.12	0.64	0.80	4.74	3.4	0.003	0.65	0.0	0.05	13.50	0.00	2.454	2.30	0.83	3.7	96.3	0.0	0.13	1.01	0.64	0.86	4.78	6509	434	4	0	1	0	3160	logfile
✔	9E4R	47518	2025-09-18	2024-10-25	3.31	3.69	3.51	3.7	0.003	0.57	0.0	0.04	15.26	0.00	2.353	6.29	0.25	2.9	97.1	0.0	0.28	0.74	0.81	2.57	3.7	0.005	0.61	0.0	0.04	16.30	0.00	2.574	3.57	2.02	3.0	97.0	0.0	0.36	1.00	0.79	0.86	2.53	14784	1866	12	0	6	0	0	logfile
✔	9K7N	62150	2025-09-17	2024-10-24	3.3	3.61	3.28	3.6	0.007	1.23	1.0	0.09	12.28	0.01	2.115	9.25	1.08	1.8	98.2	0.0	2.30	0.48	0.74	1.88	3.6	0.004	0.65	0.0	0.04	15.66	0.00	2.555	10.06	3.01	2.2	97.8	0.0	1.44	0.99	0.54	0.81	0.80	4332	545	2	0	2	0	0	logfile
✔	9K7B	62147	2025-09-17	2024-10-23	2.75	2.95	2.74	3.0	0.013	1.40	0.0	0.10	14.68	0.01	1.784	20.92	1.71	1.1	98.9	0.0	1.92	0.43	0.67	3.19	3.0	0.003	0.61	0.0	0.04	14.35	0.00	2.327	8.70	0.86	2.0	98.0	0.0	1.60	0.93	0.60	0.86	2.87	4522	544	2	0	11	19	0	logfile
✘	9E2V	47469	2025-09-18	2024-10-23	2.0	2.78	2.06	2.5	0.002	0.40	0.0	0.04	17.95	0.00	2.381	3.76	0.85	0.9	99.1	0.0	1.64	0.79	0.94	5.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16910	2260	10	0	0	0	0	logfile
✔	9K6Q	62132	2025-09-17	2024-10-22	2.7	2.65	2.52	2.7	0.004	0.83	0.0	0.07	20.25	0.01	2.228	6.93	0.81	4.0	95.9	0.1	-0.54	0.71	0.80	2.96	2.7	0.004	0.70	0.0	0.05	20.24	0.01	2.505	10.44	3.75	3.7	96.3	0.0	-0.08	0.47	0.71	0.81	2.82	6276	706	4	31	1	0	0	logfile
✔	9E2L	47456	2025-09-18	2024-10-22	3.08	2.22	3.12	1.9	0.003	0.74	0.0	0.04	19.47	0.01	2.182	9.79	2.33	3.9	95.3	0.8	0.92	0.79	0.79	2.17	1.9	0.004	0.64	0.0	0.04	19.42	0.00	2.407	7.54	5.13	3.5	95.8	0.6	2.06	0.42	0.81	0.80	2.32	15436	1928	7	0	1	0	0	logfile
✔	9E2P	47460	2025-09-17	2024-10-22	3.57	3.82	3.60	3.8	0.017	1.60	2.0	0.06	17.62	0.01	2.131	2.64	0.00	4.9	95.1	0.0	-3.13	0.75	0.84	2.55	3.7	0.003	0.61	0.0	0.04	17.99	0.00	1.887	3.91	1.74	4.6	95.4	0.0	0.31	0.46	0.76	0.85	1.60	10282	1262	6	0	10	0	0	logfile
✔	9E2M	47457	2025-09-18	2024-10-22	2.98	2.22	3.10	1.9	0.004	0.74	0.0	0.04	19.90	0.01	2.235	9.41	5.31	3.7	95.4	0.9	0.81	0.80	0.80	2.41	1.9	0.004	0.71	0.0	0.04	19.60	0.01	2.421	8.27	4.90	3.1	96.1	0.7	1.88	0.47	0.80	0.80	2.21	15412	1926	7	0	1	0	0	logfile
✔	9E2J	47454	2025-09-19	2024-10-22	3.59	2.40	3.65	1.5	0.004	0.84	0.0	0.04	20.10	0.01	2.089	21.10	6.74	7.3	91.9	0.8	-2.51	0.73	0.72	1.11	1.6	0.003	0.74	0.0	0.04	19.50	0.00	2.481	12.32	6.13	5.1	94.4	0.5	0.19	1.66	0.72	0.71	1.36	25560	3174	6	0	0	0	0	logfile
✔	9K6S	62134	2025-09-17	2024-10-22	2.8	3.11	2.95	3.3	0.005	0.94	0.0	0.08	22.12	0.02	2.234	8.72	2.49	5.3	94.2	0.5	-1.58	0.48	0.49	0.93	3.2	0.003	0.70	0.0	0.04	21.66	0.00	2.371	19.20	4.71	6.0	94.0	0.0	-0.79	0.79	0.48	0.53	1.31	4138	421	4	38	1	0	0	logfile
✔	9H5G	51884	2025-09-17	2024-10-22	2.48	2.59	2.46	2.7	0.012	1.99	0.0	0.09	10.88	0.01	2.550	0.00	0.00	6.0	94.0	0.0	-1.90	0.44	0.85	6.35	2.6	0.005	0.88	0.0	0.05	17.36	0.00	2.599	2.53	4.76	6.2	93.8	0.0	-2.78	0.66	0.45	0.89	3.94	3300	432	6	0	0	0	0	logfile

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