Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K6Q	62132	2025-09-17	2024-10-22	2.7	2.65	2.52	2.7	0.004	0.83	0.0	0.07	20.25	0.01	2.228	6.93	0.81	4.0	95.9	0.1	-0.54	0.71	0.80	2.96	2.7	0.004	0.70	0.0	0.05	20.24	0.01	2.505	10.44	3.75	3.7	96.3	0.0	-0.08	0.47	0.71	0.81	2.82	6276	706	4	31	1	0	0	logfile
✔	9K6T	62135	2025-09-17	2024-10-22	2.8	3.19	2.96	3.3	0.007	1.22	0.0	0.11	23.56	0.01	2.197	9.32	3.32	5.1	94.2	0.7	-1.88	0.60	0.64	1.55	3.2	0.003	0.70	0.0	0.05	22.42	0.01	2.032	14.67	4.71	4.6	95.4	0.0	-0.88	0.56	0.51	0.61	2.87	4222	421	4	42	1	0	0	logfile
✔	9K6L	62129	2025-09-17	2024-10-22	2.77	2.29	2.78	2.1	0.004	0.77	0.0	0.05	16.44	0.01	2.090	16.22	0.31	3.3	96.7	0.0	0.62	0.73	0.75	2.26	2.0	0.004	0.63	0.0	0.04	17.47	0.00	2.458	12.11	4.80	2.9	97.1	0.0	0.68	0.41	0.77	0.78	2.19	8914	1127	6	0	1	0	0	logfile
✔	9H5J	51886	2025-09-17	2024-10-22	2.72	2.79	2.74	2.9	0.012	1.96	0.0	0.08	11.32	0.02	2.556	0.00	0.00	6.2	92.1	1.7	-2.25	0.43	0.87	6.55	2.9	0.003	0.75	0.0	0.05	17.41	0.01	2.599	3.87	3.44	5.5	94.5	0.0	-2.93	0.82	0.45	0.91	5.07	3300	432	6	0	0	0	0	logfile
✔	9E2K	47455	2025-09-18	2024-10-22	3.0	2.21	3.09	1.9	0.004	0.77	0.0	0.04	19.33	0.01	2.199	10.12	2.32	3.7	95.6	0.6	1.03	0.80	0.80	2.24	1.9	0.003	0.68	0.0	0.04	19.51	0.00	2.405	7.95	3.30	3.1	96.3	0.6	2.03	0.45	0.80	0.80	1.88	15520	1939	7	0	1	0	0	logfile
✔	9K6R	62133	2025-09-17	2024-10-22	2.7	2.79	2.65	2.8	0.004	0.77	0.0	0.06	20.51	0.01	2.235	6.23	0.49	2.9	97.1	0.0	-0.70	0.70	0.75	3.23	2.8	0.003	0.62	0.0	0.04	20.51	0.00	1.996	8.93	1.22	2.7	97.3	0.0	-0.26	1.68	0.66	0.77	3.50	4405	480	4	29	1	0	0	logfile
✔	9E2J	47454	2025-09-19	2024-10-22	3.59	2.40	3.65	1.5	0.004	0.84	0.0	0.04	20.10	0.01	2.089	21.10	6.74	7.3	91.9	0.8	-2.51	0.73	0.72	1.11	1.6	0.003	0.74	0.0	0.04	19.50	0.00	2.481	12.32	6.13	5.1	94.4	0.5	0.19	1.66	0.72	0.71	1.36	25560	3174	6	0	0	0	0	logfile
✔	9E2E	47449	2025-09-19	2024-10-22	4.0	4.46	3.86	4.3	0.006	0.67	0.0	0.04	13.28	0.00	1.744	18.03	6.73	2.9	97.0	0.1	0.74	0.83	0.76	—	4.3	0.004	0.88	0.0	0.05	17.14	0.00	1.859	12.40	4.54	3.3	96.7	0.0	0.60	0.87	0.88	0.88	—	22924	2880	22	0	12	0	0	logfile
✔	9E29	47446	2025-09-18	2024-10-21	3.3	4.22	—	3.9	0.004	0.59	0.0	0.05	15.01	0.00	1.765	10.24	0.17	5.0	95.0	0.0	0.33	0.86	0.68	0.72	3.8	0.006	0.96	1.0	0.05	16.60	0.01	1.900	17.16	3.49	4.1	95.8	0.0	0.08	1.84	0.92	0.84	0.73	18498	2532	12	0	12	0	0	logfile
✔	9K42	62040	2025-09-17	2024-10-21	3.14	3.95	3.18	3.2	0.006	0.84	0.0	0.06	31.95	0.00	2.050	5.44	0.49	1.2	98.8	0.0	2.37	0.86	0.78	2.08	3.2	0.003	0.62	0.0	0.03	29.19	0.00	2.517	10.13	1.13	1.9	98.1	0.0	3.32	2.29	0.92	0.87	2.03	11824	746	10	290	0	0	0	logfile
✔	9E25	47436	2025-09-18	2024-10-21	3.2	3.94	—	3.7	0.003	0.46	0.0	0.04	13.78	0.00	1.991	5.22	0.06	4.1	95.9	0.0	1.28	0.84	0.70	-0.08	3.7	0.004	0.72	0.0	0.05	16.00	0.00	2.423	11.08	2.59	2.7	97.3	0.0	1.07	1.25	0.91	0.87	1.22	18180	2532	6	0	0	0	0	logfile
✔	9K40	62036	2025-09-17	2024-10-21	3.15	3.98	3.19	3.3	0.004	0.61	0.0	0.04	28.83	0.00	2.219	7.01	0.65	1.0	99.0	0.0	2.72	0.88	0.81	2.25	3.3	0.004	0.63	0.0	0.03	29.13	0.00	2.482	9.46	1.78	2.3	97.7	0.0	3.34	0.67	0.92	0.88	1.66	11824	746	10	290	0	0	0	logfile
✔	9K41	62038	2025-09-17	2024-10-21	2.81	3.92	3.03	3.1	0.004	0.56	0.0	0.04	28.88	0.00	2.209	6.01	1.29	1.6	98.4	0.0	1.93	0.91	0.88	2.33	3.1	0.004	0.62	0.0	0.03	28.69	0.00	2.276	7.79	1.29	2.7	97.3	0.0	3.45	1.20	0.91	0.89	1.99	11828	746	10	290	0	0	0	logfile
✔	9K3Z	62034	2025-09-17	2024-10-21	2.75	3.65	2.90	3.1	0.004	0.59	0.0	0.04	29.15	0.00	2.204	5.41	0.64	1.1	98.9	0.0	2.69	0.90	0.86	2.83	3.1	0.004	0.61	0.0	0.03	28.85	0.00	2.108	7.20	1.61	1.6	98.4	0.0	3.74	0.51	0.90	0.88	2.49	11814	744	10	290	0	0	0	logfile
✔	9E28	47443	2025-09-18	2024-10-21	4.4	4.83	4.46	4.2	0.002	0.48	0.0	0.04	4.24	0.00	2.269	4.24	0.00	7.5	92.4	0.1	0.58	0.79	0.73	—	4.2	0.002	0.46	0.0	0.04	3.63	0.00	2.558	2.10	0.00	5.5	94.5	0.1	1.61	1.00	0.79	0.73	—	21249	4734	16	0	0	0	0	logfile
✔	9E1T	47420	2025-09-17	2024-10-21	3.0	3.15	3.04	3.1	0.002	0.38	0.0	0.04	10.62	0.00	2.108	5.74	0.00	2.7	97.3	0.0	0.55	0.72	0.79	3.41	3.1	0.003	0.62	0.0	0.04	16.01	0.00	2.093	8.85	1.48	3.9	96.1	0.0	0.08	2.75	0.74	0.80	2.98	10032	1204	4	2	2	0	0	logfile
✔	9E24	47433	2025-09-18	2024-10-21	3.4	4.22	—	3.9	0.003	0.50	0.0	0.04	13.40	0.00	2.008	6.55	0.06	2.6	97.4	0.0	1.00	0.88	0.74	-0.32	3.8	0.003	0.76	0.0	0.05	15.62	0.00	2.463	11.87	3.55	3.1	96.9	0.0	0.62	1.39	0.92	0.85	1.55	18324	2532	6	0	0	0	0	logfile
✔	9E21	47426	2025-09-17	2024-10-21	3.1	2.19	3.03	2.0	0.002	0.49	0.0	0.04	12.99	0.00	2.470	4.17	0.28	3.3	96.7	0.0	-1.10	0.65	0.81	4.00	2.0	0.003	0.51	0.0	0.04	14.18	0.00	2.629	4.48	1.40	2.4	97.6	0.0	-0.73	0.29	0.64	0.82	3.45	3285	424	4	0	1	0	0	logfile
✔	9E22	47429	2025-09-19	2024-10-21	3.3	3.86	3.47	3.7	0.003	0.63	0.0	0.04	15.23	0.00	2.085	5.09	0.00	3.1	96.9	0.0	0.16	0.75	0.76	1.16	3.7	0.007	0.73	0.0	0.05	16.70	0.00	1.908	12.10	1.44	3.7	96.3	0.0	0.62	0.35	0.76	0.78	1.15	24612	3245	3	0	5	0	0	logfile
✔	9K43	62042	2025-09-17	2024-10-21	2.87	4.01	3.12	3.2	0.004	0.61	0.0	0.04	28.51	0.00	2.234	7.24	0.80	0.8	99.2	0.0	2.81	0.90	0.85	2.69	3.2	0.004	0.64	0.0	0.03	28.55	0.00	2.480	8.05	2.57	2.2	97.8	0.0	2.95	1.63	0.92	0.89	2.02	11814	744	10	290	0	0	0	logfile

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