Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K3Z	62034	2025-09-17	2024-10-21	2.75	3.65	2.90	3.1	0.004	0.59	0.0	0.04	29.15	0.00	2.204	5.41	0.64	1.1	98.9	0.0	2.69	0.90	0.86	2.83	3.1	0.004	0.61	0.0	0.03	28.85	0.00	2.108	7.20	1.61	1.6	98.4	0.0	3.74	0.51	0.90	0.88	2.49	11814	744	10	290	0	0	0	logfile
✔	9K49	62050	2025-09-18	2024-10-21	3.6	3.97	3.72	3.9	0.004	0.71	0.0	0.04	18.22	0.00	2.212	5.03	1.90	4.8	95.2	0.0	2.11	0.63	0.76	0.47	3.9	0.004	0.57	0.0	0.03	18.44	0.00	2.297	6.55	3.49	5.3	94.7	0.0	2.53	0.38	0.62	0.77	0.56	18473	1161	8	0	0	0	9352	logfile
✔	9K41	62038	2025-09-17	2024-10-21	2.81	3.92	3.03	3.1	0.004	0.56	0.0	0.04	28.88	0.00	2.209	6.01	1.29	1.6	98.4	0.0	1.93	0.91	0.88	2.33	3.1	0.004	0.62	0.0	0.03	28.69	0.00	2.276	7.79	1.29	2.7	97.3	0.0	3.45	1.20	0.91	0.89	1.99	11828	746	10	290	0	0	0	logfile
✔	9E0Y	47377	2025-09-19	2024-10-20	3.4	4.07	3.57	3.7	0.004	0.76	0.0	0.05	16.02	0.01	2.502	7.49	0.04	4.8	95.2	0.0	-0.98	0.77	0.63	0.52	3.7	0.003	0.69	0.0	0.04	17.27	0.00	2.482	14.62	1.52	5.0	95.0	0.0	0.02	0.38	0.78	0.64	0.27	22201	2753	2	0	4	0	0	logfile
✔	9E0W	47372	2025-09-19	2024-10-20	3.2	3.73	3.34	3.6	0.003	0.61	0.0	0.04	15.03	0.00	1.962	6.19	0.04	3.7	96.3	0.0	0.62	0.75	0.81	1.99	3.6	0.003	0.58	0.0	0.04	16.35	0.00	1.883	6.99	2.04	3.4	96.6	0.0	1.44	1.37	0.73	0.80	1.80	24531	3095	3	0	6	0	0	logfile
✔	9E0U	47371	2025-09-19	2024-10-19	3.4	3.95	3.57	3.8	0.004	0.67	0.0	0.04	14.96	0.00	1.953	5.65	0.00	3.5	96.5	0.0	0.66	0.77	0.82	1.59	3.8	0.003	0.61	0.0	0.04	16.29	0.00	1.916	6.93	1.22	2.5	97.5	0.0	1.81	0.41	0.78	0.83	1.27	22051	2783	2	0	6	0	0	logfile
✔	9K3K	62017	2025-09-17	2024-10-19	3.12	3.71	2.85	3.4	0.004	0.74	0.0	0.04	13.29	0.01	2.179	8.21	0.00	4.4	95.6	0.0	-0.23	0.77	0.84	3.98	3.4	0.005	0.73	0.0	0.04	15.35	0.00	2.437	7.80	2.07	3.2	96.8	0.0	0.89	1.28	0.73	0.85	2.58	9755	1256	6	0	0	0	0	logfile
✔	9K3L	62018	2025-09-17	2024-10-19	3.01	2.30	3.06	2.0	0.005	0.69	0.0	0.05	13.29	0.00	2.146	11.00	0.00	6.0	94.0	0.0	-1.21	0.75	0.74	3.23	2.0	0.003	0.64	0.0	0.04	15.32	0.00	2.492	8.52	2.34	3.6	96.4	0.0	-0.01	0.37	0.76	0.76	2.50	9251	1213	6	0	0	0	0	logfile
✔	9K3P	62024	2025-09-17	2024-10-19	2.98	2.31	2.98	1.5	0.005	0.73	0.0	0.05	13.63	0.00	2.101	19.02	0.10	6.2	93.8	0.0	-1.91	0.73	0.69	2.68	1.5	0.006	1.04	1.0	0.05	16.53	0.00	2.091	15.84	3.30	5.1	94.9	0.1	-0.86	1.18	0.73	0.71	1.73	9416	1227	6	0	0	0	0	logfile
✔	9E0K	47360	2025-09-19	2024-10-18	3.2	3.74	3.38	3.6	0.003	0.64	0.0	0.04	15.10	0.00	1.964	5.77	0.04	3.6	96.4	0.0	0.72	0.74	0.82	1.91	3.6	0.003	0.57	0.0	0.04	16.41	0.00	1.914	6.77	0.94	3.0	97.0	0.0	1.94	0.33	0.74	0.82	1.65	22930	2892	2	0	6	0	0	logfile
✔	9K3F	62014	2025-09-17	2024-10-18	2.75	2.31	2.73	2.0	0.009	0.82	0.0	0.05	13.35	0.01	2.139	11.65	0.21	7.7	92.3	0.0	-0.87	0.76	0.75	3.29	2.1	0.003	0.68	0.0	0.04	16.06	0.00	2.532	8.42	2.53	3.6	96.4	0.0	0.59	0.45	0.76	0.78	2.34	8743	1125	5	0	0	0	0	logfile
✔	9K3H	62015	2025-09-17	2024-10-18	2.86	3.71	2.88	3.5	0.004	0.66	0.0	0.04	12.79	0.00	2.116	12.99	0.00	6.6	93.4	0.0	-1.14	0.69	0.79	2.86	3.5	0.003	0.78	0.0	0.04	16.43	0.00	2.425	9.17	2.19	4.5	95.5	0.0	-0.58	0.51	0.68	0.79	2.47	8835	1131	5	0	0	0	0	logfile
✔	9K2W	61999	2025-09-18	2024-10-18	3.54	4.01	3.60	3.9	0.003	0.89	2.0	0.05	17.20	0.01	2.112	13.08	0.22	4.0	96.0	0.0	-0.11	0.74	0.79	1.01	3.9	0.003	0.64	0.0	0.04	17.86	0.00	2.514	9.13	2.23	3.1	96.9	0.0	0.52	0.41	0.76	0.81	1.23	12438	1559	3	0	2	0	0	logfile
✔	9K2X	62000	2025-09-18	2024-10-18	3.75	4.23	3.78	4.0	0.004	0.87	0.0	0.05	17.38	0.01	2.140	16.58	0.45	4.5	95.5	0.0	-0.46	0.76	0.73	0.97	4.0	0.003	0.68	0.0	0.04	17.54	0.00	2.411	10.27	2.69	3.7	96.3	0.0	0.35	0.45	0.78	0.75	0.75	12376	1551	2	0	0	0	0	logfile
✔	9K3A	62011	2025-09-18	2024-10-18	3.6	3.41	3.41	3.6	0.008	1.11	14.0	0.08	16.14	0.01	1.754	14.90	0.40	4.0	96.0	0.0	1.17	0.30	0.81	2.04	3.6	0.004	0.94	1.0	0.05	16.99	0.01	2.083	8.84	2.89	4.2	95.8	0.0	1.53	1.58	0.31	0.82	1.82	16122	2044	2	0	0	0	0	logfile
✔	9K24	61989	2025-09-17	2024-10-17	3.6	2.93	2.70	4.0	0.002	0.59	0.0	0.05	17.48	0.00	2.503	11.79	0.00	12.9	87.1	0.0	-2.81	0.34	0.65	4.11	3.7	0.004	0.83	0.0	0.05	18.02	0.00	2.604	10.52	3.26	17.2	82.8	0.0	-3.26	1.19	0.38	0.71	4.14	2682	384	6	0	0	0	0	logfile
✔	9K29	61993	2025-09-18	2024-10-17	3.0	3.64	2.89	3.4	0.004	0.72	0.0	0.05	12.68	0.00	1.817	11.86	0.07	1.4	98.6	0.1	1.83	0.77	0.85	1.23	3.3	0.004	0.74	0.0	0.04	15.99	0.00	2.458	8.38	1.86	2.0	98.0	0.0	2.48	0.51	0.78	0.87	1.47	13230	1722	10	0	0	0	0	logfile
✔	9K27	61992	2025-09-17	2024-10-17	2.68	3.81	3.15	3.6	0.004	0.68	0.0	0.04	13.89	0.00	1.835	9.14	0.10	6.3	93.7	0.0	-0.54	0.75	0.86	2.98	3.6	0.003	0.75	0.0	0.04	16.14	0.00	2.516	7.56	1.69	5.3	94.7	0.0	0.14	1.25	0.68	0.81	2.62	9213	1167	7	0	1	0	0	logfile
✔	9K26	61991	2025-09-17	2024-10-17	3.0	3.96	3.34	3.9	0.004	0.71	0.0	0.05	13.77	0.00	1.994	11.77	0.72	7.9	92.0	0.1	-1.03	0.64	0.64	0.07	3.8	0.004	0.90	0.0	0.05	17.02	0.00	2.337	10.76	4.55	6.7	93.3	0.0	-0.83	1.55	0.65	0.76	1.82	8967	1147	7	0	1	0	0	logfile
✔	9K23	61988	2025-09-17	2024-10-17	2.6	2.16	2.06	3.0	0.005	0.56	0.0	0.05	13.00	0.00	2.225	5.64	0.00	4.7	95.3	0.0	-3.85	0.43	0.88	6.96	3.0	0.004	0.55	0.0	0.05	17.71	0.00	2.593	3.53	3.47	4.4	95.6	0.0	-2.53	0.39	0.43	0.88	6.43	2772	396	6	0	0	0	0	logfile

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