Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K24	61989	2025-09-17	2024-10-17	3.6	2.93	2.70	4.0	0.002	0.59	0.0	0.05	17.48	0.00	2.503	11.79	0.00	12.9	87.1	0.0	-2.81	0.34	0.65	4.11	3.7	0.004	0.83	0.0	0.05	18.02	0.00	2.604	10.52	3.26	17.2	82.8	0.0	-3.26	1.19	0.38	0.71	4.14	2682	384	6	0	0	0	0	logfile
✔	9K29	61993	2025-09-18	2024-10-17	3.0	3.64	2.89	3.4	0.004	0.72	0.0	0.05	12.68	0.00	1.817	11.86	0.07	1.4	98.6	0.1	1.83	0.77	0.85	1.23	3.3	0.004	0.74	0.0	0.04	15.99	0.00	2.458	8.38	1.86	2.0	98.0	0.0	2.48	0.51	0.78	0.87	1.47	13230	1722	10	0	0	0	0	logfile
✔	9H3F	51819	2025-09-17	2024-10-16	3.47	3.79	3.46	3.8	0.005	0.88	0.0	0.05	14.32	0.01	1.976	6.27	0.00	1.8	98.2	0.0	-0.63	0.51	0.74	2.32	3.8	0.003	0.58	0.0	0.04	15.81	0.00	1.986	8.32	1.78	3.0	97.0	0.0	1.16	0.50	0.60	0.80	2.00	10212	1272	12	0	12	0	0	logfile
✔	9K20	61986	2025-09-17	2024-10-16	2.65	2.93	2.73	2.9	0.004	0.78	0.0	0.04	16.09	0.01	2.225	6.92	0.00	2.6	97.4	0.0	0.07	0.66	0.78	3.18	2.9	0.003	0.59	0.0	0.04	16.51	0.00	2.428	6.18	2.78	2.6	97.4	0.0	0.44	0.26	0.66	0.79	3.17	8292	1111	6	0	1	0	0	logfile
✔	9K0X	61958	2025-09-17	2024-10-16	2.83	3.04	2.83	3.1	0.004	0.82	0.0	0.05	16.09	0.01	2.228	6.83	0.00	2.8	97.2	0.0	-0.45	0.65	0.78	2.31	3.1	0.003	0.57	0.0	0.04	16.77	0.00	2.468	6.76	3.64	2.2	97.8	0.0	0.34	1.15	0.65	0.79	2.27	7300	979	6	0	1	0	0	logfile
✔	9K1D	61972	2025-09-17	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.43	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	3.5	0.003	0.62	0.0	0.04	16.90	0.00	2.383	7.43	4.77	3.0	97.0	0.0	0.64	0.43	0.71	0.85	1.37	6892	858	5	0	6	0	0	logfile
✔	9K1C	61971	2025-09-17	2024-10-16	3.2	3.44	3.16	3.5	0.002	0.92	0.0	0.04	13.74	0.00	2.213	5.89	0.00	2.2	97.8	0.0	2.36	0.64	0.76	2.57	3.5	0.003	0.58	0.0	0.04	15.43	0.00	2.537	6.19	2.66	2.8	97.2	0.0	1.61	0.40	0.60	0.79	2.28	6611	871	5	0	1	0	0	logfile
✔	9K0E	61945	2025-09-17	2024-10-15	2.8	2.98	2.37	3.0	0.006	0.64	0.0	0.06	16.58	0.00	2.209	10.28	0.00	13.5	86.5	0.0	-3.39	0.46	0.86	4.69	3.0	0.003	0.54	0.0	0.05	18.88	0.00	2.525	5.80	1.01	8.1	91.9	0.0	-0.67	0.97	0.43	0.87	3.57	1890	246	16	0	0	6	0	logfile
✔	9K0D	61944	2025-09-17	2024-10-15	2.6	2.52	2.26	2.8	0.008	0.85	0.0	0.06	16.07	0.00	2.369	8.13	0.00	5.1	94.9	0.0	-3.14	0.43	0.87	5.59	21.0	0.006	0.70	0.0	0.06	18.69	0.00	2.607	2.94	2.43	5.1	94.9	0.0	-1.95	0.50	0.41	0.89	2.97	2874	390	24	0	0	6	0	logfile
✔	9K0F	61946	2025-09-17	2024-10-15	2.8	2.94	2.17	3.0	0.008	0.72	0.0	0.06	13.31	0.00	2.437	8.20	0.00	7.2	92.8	0.0	-2.77	0.44	0.89	6.47	3.0	0.003	0.57	0.0	0.06	16.06	0.00	2.589	3.98	1.88	3.4	96.6	0.0	-0.80	0.39	0.45	0.91	5.52	2115	288	17	0	0	6	0	logfile
✔	9DZ2	47323	2025-09-17	2024-10-15	3.31	3.93	3.33	3.7	0.004	0.74	0.0	0.05	14.55	0.01	2.174	10.10	0.49	6.3	93.2	0.6	-2.10	0.78	0.73	3.18	3.8	0.003	0.65	0.0	0.04	15.41	0.00	2.507	5.29	2.04	5.6	93.8	0.6	-1.32	0.74	0.76	0.79	2.84	9523	1207	8	0	0	0	0	logfile
✔	9DZ6	47325	2025-09-18	2024-10-15	3.1	3.74	3.18	3.5	0.004	0.49	0.0	0.04	11.85	0.01	1.821	4.99	0.26	2.3	97.6	0.1	2.01	0.82	0.82	3.19	3.5	0.002	0.46	0.0	0.04	13.52	0.00	1.780	3.36	0.71	1.4	98.5	0.1	2.88	0.42	0.82	0.83	2.70	20204	1226	3	0	2	0	10125	logfile
✔	9DYo	47311	2025-09-18	2024-10-14	2.57	2.82	2.58	2.9	0.003	0.45	0.0	0.03	15.83	0.00	1.984	16.91	0.86	1.2	98.8	0.0	1.52	0.65	0.88	4.00	2.9	0.003	0.48	0.0	0.04	16.44	0.00	2.340	6.61	1.10	1.9	98.1	0.0	1.45	0.25	0.62	0.87	3.45	15451	1880	10	0	6	0	0	logfile
✘	9DYL	47308	2025-09-18	2024-10-14	2.6	3.05	2.71	3.0	0.013	1.25	0.0	0.07	14.40	0.01	2.211	13.34	0.00	3.2	96.8	0.0	1.22	0.70	0.92	4.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15645	1880	10	0	10	0	0	logfile
✔	9DYK	47307	2025-09-18	2024-10-14	2.27	2.50	2.38	2.6	0.002	0.53	0.0	0.04	14.11	0.00	2.240	5.29	0.06	0.9	99.1	0.0	1.18	0.68	0.88	5.19	2.6	0.002	0.48	0.0	0.04	14.72	0.00	2.346	5.29	1.04	1.1	98.9	0.0	1.49	0.20	0.64	0.88	4.98	15486	1880	10	0	6	0	0	logfile
✘	9DYi	47305	2025-09-18	2024-10-14	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15521	1885	15	0	6	0	0	logfile
✔	9DYM	47309	2025-09-18	2024-10-14	2.67	3.00	2.77	3.1	0.013	1.31	0.0	0.08	15.93	0.01	2.088	6.53	2.12	1.5	98.5	0.0	1.40	0.68	0.92	4.06	3.1	0.004	0.53	0.0	0.04	16.68	0.00	2.249	5.11	1.95	1.6	98.4	0.0	1.44	0.28	0.61	0.88	3.61	15629	1880	12	0	10	2	0	logfile
✔	9DYH	47304	2025-09-18	2024-10-14	3.15	3.50	3.22	3.5	0.012	1.37	0.0	0.07	15.27	0.01	1.993	8.17	1.64	1.8	98.2	0.0	1.20	0.55	0.79	3.21	3.5	0.003	0.65	0.0	0.04	16.57	0.00	2.314	11.13	1.32	3.2	96.8	0.0	1.30	1.78	0.57	0.79	2.40	14340	1735	10	0	5	0	0	logfile
✘	9DYJ	47306	2025-09-18	2024-10-14	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14391	1735	10	0	11	0	0	logfile
✘	9DYN	47310	2025-09-18	2024-10-14	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14391	1735	10	0	11	0	0	logfile

• ← previous
• Page 34 of 639
• next →