Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DXM	47291	2025-09-18	2024-10-11	3.2	3.82	3.26	3.6	0.006	0.60	0.0	0.04	11.97	0.00	1.965	3.86	0.00	2.4	97.6	0.0	1.29	0.85	0.87	3.31	3.6	0.003	0.51	0.0	0.04	13.55	0.00	1.884	4.06	0.00	2.0	98.0	0.0	2.46	0.46	0.84	0.85	2.48	20203	1224	3	0	2	0	10147	logfile
✔	9DXS	47297	2025-09-18	2024-10-11	3.55	4.09	3.67	4.0	0.011	1.52	0.0	0.19	20.28	0.01	2.217	4.35	0.39	11.0	88.4	0.6	-5.80	0.60	0.82	3.26	4.0	0.006	1.03	0.0	0.07	18.31	0.01	2.258	11.11	4.26	11.3	88.6	0.1	-0.79	3.16	0.63	0.85	1.97	15294	1784	14	0	43	0	0	logfile
✔	9DXA	47283	2025-09-18	2024-10-11	3.4	3.75	3.47	3.7	0.009	0.80	0.0	0.04	15.02	0.00	2.281	4.71	0.23	2.4	97.6	0.0	1.98	0.63	0.79	1.86	3.7	0.003	0.54	0.0	0.04	15.30	0.00	2.493	8.20	3.25	2.9	97.1	0.0	2.24	1.29	0.62	0.80	1.26	16291	1880	12	0	18	0	0	logfile
✔	9H1S	51771	2025-09-17	2024-10-10	3.0	3.84	2.13	3.4	0.023	1.64	0.0	0.07	9.90	0.01	2.272	5.47	0.00	3.8	96.2	0.0	-1.11	0.49	0.82	2.90	3.4	0.004	0.80	0.0	0.05	14.55	0.00	2.426	10.65	0.90	4.2	95.8	0.0	-0.48	1.72	0.50	0.83	2.32	4994	616	4	0	2	0	0	logfile
✔	9DWZ	47275	2025-09-17	2024-10-10	2.35	2.30	2.56	1.5	0.041	3.05	0.0	0.12	18.59	0.02	2.168	15.80	0.00	0.0	100.0	0.0	2.31	0.96	0.94	5.61	1.6	0.008	0.62	0.0	0.03	16.81	0.00	2.522	7.40	0.79	0.5	99.5	0.0	4.26	0.36	0.95	0.93	4.56	8766	801	36	0	54	0	0	logfile
✔	9H1Z	51786	2025-09-17	2024-10-10	3.3	3.72	3.44	3.7	0.015	0.99	2.0	0.05	13.83	0.01	1.599	4.31	0.91	3.1	96.9	0.0	-1.10	0.54	0.66	3.18	3.7	0.003	0.61	0.0	0.04	15.17	0.00	2.225	3.53	0.99	3.2	96.8	0.0	1.16	2.18	0.67	0.80	2.37	10892	1340	3	0	1	0	0	logfile
✔	9JWG	61852	2025-09-17	2024-10-10	3.47	3.90	3.74	3.8	0.007	0.99	8.0	0.06	16.67	0.01	2.010	14.53	1.68	9.0	90.6	0.4	-1.58	0.70	0.77	1.54	3.8	0.004	0.77	0.0	0.05	17.43	0.01	2.397	11.49	3.29	8.8	91.1	0.1	-0.61	0.50	0.69	0.79	1.16	11647	1456	2	0	0	0	0	logfile
✔	9DX7	47282	2025-09-18	2024-10-10	3.3	3.69	3.40	3.7	0.010	0.79	0.0	0.04	12.83	0.00	2.254	4.54	0.17	2.0	98.0	0.0	1.85	0.63	0.81	2.53	3.7	0.003	0.55	0.0	0.04	15.29	0.00	2.435	8.28	2.98	2.6	97.4	0.0	2.29	1.63	0.60	0.79	1.93	16238	1873	12	0	18	0	0	logfile
✔	9JVM	61840	2025-09-17	2024-10-09	2.36	2.47	2.27	3.0	0.009	1.11	0.0	0.05	12.65	0.01	2.211	12.67	0.00	11.2	88.4	0.4	-1.75	0.65	0.61	4.04	3.2	0.004	0.86	0.0	0.04	14.60	0.01	2.620	7.20	1.33	6.2	93.8	0.0	1.32	0.94	0.65	0.63	2.51	1800	267	1	0	0	0	0	logfile
✔	9DWJ	47252	2025-09-18	2024-10-09	3.4	3.54	3.52	3.5	0.005	0.70	0.0	0.04	28.02	0.01	2.285	5.75	0.64	3.0	97.0	0.0	0.84	0.82	0.86	3.13	3.5	0.004	0.57	0.0	0.03	28.25	0.00	2.466	8.41	2.09	3.4	96.6	0.0	2.72	0.33	0.82	0.88	2.27	11887	748	11	291	0	0	0	logfile
✔	9JVV	61844	2025-09-17	2024-10-09	2.82	3.24	2.83	3.2	0.003	0.67	0.0	0.04	12.39	0.00	2.265	8.46	0.10	3.4	96.6	0.0	-0.66	0.60	0.80	2.20	3.2	0.002	0.54	0.0	0.04	14.66	0.00	2.583	5.69	2.16	3.0	97.0	0.0	2.18	0.44	0.58	0.81	1.12	9405	1245	6	0	3	0	0	logfile
✔	9DWN	47258	2025-09-17	2024-10-09	3.2	2.91	3.15	3.3	0.004	0.63	0.0	0.04	14.43	0.00	2.165	6.64	0.45	2.6	97.4	0.0	2.60	0.56	0.80	3.93	3.3	0.003	0.49	0.0	0.03	14.65	0.00	2.526	6.17	1.57	2.3	97.7	0.0	4.08	0.25	0.54	0.83	3.90	4325	540	6	0	9	2	0	logfile
✔	9DWE	47241	2025-09-18	2024-10-09	2.8	3.10	2.94	3.1	0.005	0.83	0.0	0.05	14.21	0.01	1.485	3.75	0.00	2.8	97.2	0.0	-0.83	0.72	0.87	4.41	3.1	0.005	0.68	0.0	0.05	16.64	0.00	2.261	19.15	3.00	4.5	95.5	0.0	-0.07	1.18	0.68	0.87	4.15	17400	2187	15	0	21	0	3	logfile
✔	9DWM	47255	2025-09-18	2024-10-09	4.2	5.01	—	4.2	0.005	0.61	0.0	0.04	30.43	0.00	2.339	6.64	0.00	3.0	97.0	0.0	2.59	0.90	0.88	—	4.2	0.004	0.57	0.0	0.04	30.36	0.00	2.499	8.66	0.00	3.9	96.1	0.0	2.48	1.05	0.90	0.88	—	11175	1065	12	289	0	0	0	logfile
✔	9DWi	47249	2025-09-18	2024-10-09	3.3	3.96	—	3.5	0.004	0.63	1.0	0.04	25.84	0.01	2.286	5.82	0.11	2.8	97.2	0.0	1.79	0.88	0.87	1.39	3.6	0.003	0.57	0.0	0.03	26.38	0.00	2.400	7.86	1.20	3.2	96.7	0.1	2.47	0.37	0.89	0.89	0.94	14661	1085	12	293	0	0	0	logfile
✔	9DWF	47242	2025-09-18	2024-10-09	3.1	3.23	3.16	3.2	0.004	0.62	0.0	0.04	27.53	0.00	2.230	4.33	0.00	1.2	98.8	0.0	1.00	0.80	0.86	3.75	3.2	0.004	0.56	0.0	0.03	28.21	0.00	2.542	6.88	1.28	1.6	98.4	0.0	2.57	0.54	0.82	0.90	3.44	11949	749	11	293	0	0	0	logfile
✔	9DWK	47253	2025-09-18	2024-10-09	4.3	6.45	4.39	4.3	0.005	0.66	0.0	0.06	30.86	0.00	2.231	7.56	0.00	1.0	99.0	0.0	2.01	0.93	0.90	—	4.3	0.005	0.60	0.0	0.04	31.46	0.00	1.955	12.82	0.00	3.6	96.4	0.0	3.36	1.30	0.93	0.91	—	10375	1068	12	249	0	0	0	logfile
✔	9DWL	47254	2025-09-18	2024-10-09	3.9	4.63	4.02	4.0	0.005	0.73	0.0	0.04	27.70	0.01	2.297	7.08	0.65	1.7	98.3	0.0	1.14	0.89	0.86	2.02	4.0	0.003	0.64	0.0	0.03	27.90	0.00	2.471	10.59	2.60	2.5	97.5	0.0	2.29	0.49	0.89	0.86	1.53	11877	742	11	293	0	0	0	logfile
✔	9DWG	47243	2025-09-18	2024-10-09	3.3	4.11	—	3.7	0.005	0.77	2.0	0.05	26.77	0.01	2.268	7.94	0.89	3.5	96.5	0.0	1.04	0.86	0.86	1.52	3.6	0.005	0.63	0.0	0.04	27.19	0.00	2.487	11.69	2.66	3.7	96.3	0.0	1.75	0.60	0.86	0.86	1.42	14535	1074	12	293	0	0	0	logfile
✔	9JVG	61838	2025-09-17	2024-10-09	2.76	3.38	2.79	3.2	0.008	0.79	2.0	0.05	12.56	0.00	1.644	10.53	0.38	5.6	94.4	0.0	-0.72	0.69	0.75	2.63	3.2	0.003	0.64	0.0	0.04	15.75	0.00	2.438	7.66	2.39	3.2	96.8	0.0	0.13	0.61	0.67	0.77	2.36	8396	1151	5	0	0	0	0	logfile

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