Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9JSU	61783	2025-09-17	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4040	264	8	0	0	0	2000	logfile
✔	9JSW	61785	2025-09-17	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.004	0.62	0.0	0.05	13.77	0.00	2.470	0.23	0.46	4.5	95.5	0.0	-1.90	1.49	0.46	0.91	7.33	4304	280	8	0	0	0	2128	logfile
✔	9DTT	47165	2025-09-17	2024-10-01	3.6	3.95	3.73	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.8	0.003	0.63	0.0	0.04	20.25	0.00	2.329	13.34	1.76	6.3	93.7	0.0	-1.37	1.20	0.55	0.41	0.85	8274	850	3	67	2	0	0	logfile
✔	9DTG	47155	2025-09-17	2024-09-30	3.83	4.14	3.78	4.1	0.003	0.65	0.0	0.04	14.39	0.00	2.199	7.26	0.79	9.2	90.6	0.2	-3.94	0.70	0.75	1.58	4.1	0.005	0.70	0.0	0.05	15.73	0.00	2.470	7.26	3.94	12.2	87.7	0.1	-3.89	1.34	0.72	0.81	1.62	8069	1023	2	0	0	0	0	logfile
✔	9JSi	61774	2025-09-19	2024-09-30	3.35	3.92	3.53	3.6	0.003	0.53	0.0	0.04	14.50	0.00	2.242	6.15	0.13	3.6	96.4	0.0	-0.13	0.70	0.65	2.93	3.6	0.004	0.59	0.0	0.05	15.70	0.00	2.135	6.68	1.25	4.4	95.6	0.0	0.06	0.70	0.88	0.90	2.84	26595	3453	14	0	21	0	0	logfile
✔	9JSM	61777	2025-09-19	2024-09-30	3.73	4.25	3.89	3.8	0.004	0.58	0.0	0.05	14.62	0.00	2.205	9.43	0.17	4.7	95.3	0.0	-0.94	0.75	0.68	1.92	3.8	0.003	0.63	0.0	0.04	16.00	0.00	2.209	10.19	1.42	4.1	95.9	0.0	-0.30	1.08	0.85	0.85	1.97	25209	3256	14	0	21	0	0	logfile
✔	9JSB	61769	2025-09-17	2024-09-30	2.93	3.10	2.93	3.2	0.004	0.78	0.0	0.05	19.71	0.01	2.088	7.84	1.59	10.9	89.1	0.0	-3.47	0.59	0.62	0.88	3.2	0.003	0.65	0.0	0.04	19.76	0.00	2.026	12.40	5.10	9.9	90.1	0.0	-2.86	0.97	0.59	0.68	0.94	11436	1404	8	10	2	0	0	logfile
✔	9JSN	61778	2025-09-19	2024-09-30	3.73	3.92	3.53	3.6	0.002	0.49	0.0	0.04	14.27	0.00	2.214	5.32	0.04	3.7	96.3	0.0	-0.31	0.83	0.80	2.71	3.6	0.004	0.59	0.0	0.04	15.68	0.00	2.170	7.67	1.41	4.4	95.6	0.0	-0.40	0.58	0.87	0.88	2.52	24834	3207	14	0	21	0	0	logfile
✔	9JS4	61766	2025-09-17	2024-09-30	3.8	3.94	3.72	3.9	0.002	0.62	0.0	0.04	12.56	0.01	2.286	6.45	0.00	4.6	95.4	0.0	-1.81	0.59	0.71	2.33	3.9	0.003	0.67	0.0	0.05	14.98	0.00	2.432	6.92	2.25	5.4	94.6	0.0	-1.78	0.33	0.60	0.72	2.45	3244	417	3	0	0	0	0	logfile
✔	9JSK	61775	2025-09-19	2024-09-30	3.57	4.07	3.75	3.7	0.002	0.50	0.0	0.04	14.56	0.00	2.138	7.37	0.14	4.4	95.6	0.0	-0.72	0.76	0.71	2.40	3.8	0.004	0.74	1.0	0.05	15.82	0.00	2.172	9.10	1.66	4.6	95.4	0.0	-0.57	0.58	0.85	0.86	2.35	25813	3343	14	0	21	0	0	logfile
✔	9JSP	61780	2025-09-17	2024-09-30	3.34	3.52	3.35	3.5	0.004	0.82	0.0	0.05	20.40	0.01	2.250	6.82	0.87	11.8	88.2	0.0	-2.83	0.61	0.61	0.84	3.5	0.003	0.65	0.0	0.04	20.42	0.00	2.362	9.10	3.84	9.8	90.2	0.0	-1.99	0.36	0.61	0.69	0.91	5862	673	5	22	1	0	0	logfile
✔	9JSL	61776	2025-09-19	2024-09-30	3.59	4.07	3.71	3.7	0.002	0.51	0.0	0.04	14.39	0.00	2.224	6.10	0.14	3.5	96.5	0.0	-0.36	0.77	0.72	2.31	3.7	0.003	0.58	0.0	0.04	15.68	0.00	2.217	7.70	1.10	4.1	95.9	0.0	-0.14	0.57	0.85	0.86	2.40	25496	3299	14	0	21	0	0	logfile
✔	9JSH	61773	2025-09-19	2024-09-30	3.32	3.90	3.56	3.6	0.003	0.55	0.0	0.05	14.25	0.00	2.191	7.20	0.07	4.3	95.7	0.0	-0.73	0.80	0.75	2.58	3.6	0.003	0.58	0.0	0.04	15.47	0.00	2.220	6.66	1.00	3.9	96.1	0.0	-0.19	0.55	0.88	0.90	2.48	26198	3397	14	0	21	0	0	logfile
✔	9JRK	61758	2025-09-17	2024-09-29	3.44	3.67	3.43	3.6	0.006	0.86	1.0	0.04	16.86	0.00	2.299	8.65	0.00	4.5	95.5	0.0	0.28	0.56	0.79	2.03	3.6	0.003	0.57	1.0	0.04	16.86	0.00	2.578	7.86	2.41	3.2	96.8	0.0	1.64	0.32	0.52	0.77	1.19	3139	386	2	0	1	0	0	logfile
✔	9JR9	61748	2025-09-18	2024-09-29	2.84	2.22	2.64	2.0	0.005	0.61	0.0	0.04	15.77	0.00	2.131	7.93	0.32	1.9	98.1	0.0	1.18	0.79	0.78	3.13	2.0	0.006	0.63	0.0	0.05	17.18	0.00	2.504	6.45	2.51	2.3	97.7	0.0	1.04	0.86	0.80	0.83	2.92	13866	1731	4	0	2	0	0	logfile
✔	9JRi	61756	2025-09-17	2024-09-29	3.43	3.65	3.41	3.6	0.006	0.87	1.0	0.04	19.71	0.01	2.119	9.77	0.30	4.2	95.8	0.0	1.04	0.53	0.75	1.25	3.6	0.004	0.64	1.0	0.04	19.55	0.00	2.533	8.98	6.95	4.7	95.3	0.0	1.56	0.24	0.53	0.76	1.32	3132	385	2	0	1	0	0	logfile
✔	9GXA	51645	2025-09-17	2024-09-29	4.01	4.77	4.07	4.0	0.004	0.65	0.0	0.04	29.32	0.00	1.931	15.93	0.00	1.6	98.4	0.0	1.51	0.85	0.76	—	4.0	0.006	0.74	0.0	0.04	30.07	0.00	2.345	18.40	0.00	2.7	97.3	0.0	1.14	1.07	0.88	0.85	—	9215	574	10	224	0	0	0	logfile
✔	9JRM	61760	2025-09-17	2024-09-29	3.34	3.55	3.32	3.5	0.007	1.01	0.0	0.06	17.94	0.00	2.229	8.67	0.00	4.0	96.0	0.0	0.97	0.59	0.78	2.18	3.5	0.004	0.62	0.0	0.04	16.30	0.00	2.615	9.45	5.76	5.6	94.4	0.0	1.58	0.27	0.54	0.76	1.76	3134	384	2	0	1	0	0	logfile
✔	9JR3	61747	2025-09-17	2024-09-29	2.8	2.91	—	98.0	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.58	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	98.0	0.003	0.60	0.0	0.04	15.70	0.00	2.534	7.37	3.85	2.9	97.0	0.1	0.97	0.90	0.48	0.76	2.41	9455	1228	9	0	3	1	0	logfile
✔	9JRN	61761	2025-09-17	2024-09-29	3.74	3.98	3.73	3.9	0.003	0.59	0.0	0.04	17.66	0.00	2.215	8.04	0.30	3.7	96.3	0.0	1.23	0.54	0.77	1.27	3.9	0.003	0.65	0.0	0.04	17.84	0.00	2.464	10.40	4.22	4.2	95.8	0.0	2.10	0.57	0.56	0.77	1.28	3129	386	2	0	1	0	0	logfile

• ← previous
• Page 39 of 639
• next →