Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JRL	61759	2025-09-17	2024-09-29	3.25	3.45	3.24	3.4	0.005	0.69	0.0	0.04	17.25	0.01	2.251	8.32	1.51	3.7	96.3	0.0	0.55	0.52	0.78	1.41	3.4	0.004	0.55	0.0	0.04	17.44	0.00	2.573	8.47	4.22	3.2	96.8	0.0	1.94	0.35	0.52	0.80	1.46	3145	386	2	0	1	0	0	logfile
✔	9JRi	61756	2025-09-17	2024-09-29	3.43	3.65	3.41	3.6	0.006	0.87	1.0	0.04	19.71	0.01	2.119	9.77	0.30	4.2	95.8	0.0	1.04	0.53	0.75	1.25	3.6	0.004	0.64	1.0	0.04	19.55	0.00	2.533	8.98	6.95	4.7	95.3	0.0	1.56	0.24	0.53	0.76	1.32	3132	385	2	0	1	0	0	logfile
✔	9DSo	47148	2025-09-17	2024-09-28	2.85	3.10	2.88	3.2	0.004	0.54	0.0	0.04	13.12	0.00	2.209	6.26	0.00	1.5	98.5	0.0	1.43	0.63	0.83	3.69	3.2	0.003	0.50	0.0	0.04	15.99	0.00	2.296	5.42	1.86	1.8	98.2	0.0	2.11	0.90	0.62	0.83	3.47	8975	1115	4	0	1	0	0	logfile
✔	9JQP	61732	2025-09-17	2024-09-28	3.34	2.86	3.30	1.3	0.006	0.89	0.0	0.05	15.53	0.01	2.056	15.57	1.25	6.4	93.6	0.0	-2.39	0.85	0.82	2.82	1.3	0.007	0.92	0.0	0.05	16.85	0.01	2.358	9.82	5.78	7.8	92.2	0.0	-1.48	0.77	0.91	0.89	2.85	8175	1052	10	0	6	0	0	logfile
✘	9JQR	61740	2025-09-18	2024-09-28	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17295	2150	12	0	16	0	0	logfile
✔	9JQT	61741	2025-09-17	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.0	0.005	0.59	0.0	0.04	15.05	0.01	2.607	7.74	2.99	2.3	97.7	0.0	0.56	0.33	0.54	0.79	3.38	5669	720	4	0	0	0	0	logfile
✔	9JQ6	61724	2025-09-17	2024-09-27	3.34	2.91	3.38	1.3	0.005	0.83	0.0	0.05	16.11	0.01	2.201	12.88	1.69	7.2	92.8	0.0	-0.60	0.94	0.90	2.34	1.4	0.006	0.82	0.0	0.05	16.57	0.01	2.413	9.07	5.34	6.8	93.2	0.0	-0.46	1.01	0.94	0.90	2.76	10236	1302	11	0	13	0	0	logfile
✔	9JQ5	61723	2025-09-17	2024-09-27	3.35	3.61	3.44	3.6	0.010	1.10	1.0	0.05	12.68	0.00	2.221	11.89	1.38	1.2	98.8	0.1	-1.72	0.59	0.53	1.14	3.6	0.003	0.73	0.0	0.04	16.42	0.00	2.539	13.12	2.36	2.7	97.3	0.0	-0.20	1.25	0.69	0.70	0.91	12252	1548	8	0	8	0	0	logfile
✔	9JQ3	61721	2025-09-17	2024-09-27	2.45	2.70	2.52	2.7	0.005	0.87	0.0	0.09	17.53	0.00	2.021	5.95	0.65	1.0	99.0	0.1	-2.05	0.74	0.81	4.36	2.7	0.003	0.61	0.0	0.04	18.37	0.00	2.481	5.70	2.60	2.3	97.7	0.1	0.84	0.64	0.69	0.87	4.46	12052	1548	8	0	4	0	0	logfile
✔	9JQA	61725	2025-09-17	2024-09-27	2.15	2.78	2.17	2.6	0.032	1.31	0.0	0.51	16.54	0.00	2.221	7.70	1.03	2.8	97.2	0.0	0.40	0.77	0.91	6.14	2.6	0.005	1.43	0.0	0.06	16.45	0.00	1.801	6.39	1.29	3.3	96.7	0.0	1.00	0.22	0.78	0.91	6.18	7431	946	5	0	4	0	0	logfile
✔	9JQ4	61722	2025-09-17	2024-09-27	2.91	3.14	2.98	3.3	0.011	1.13	1.0	0.06	13.58	0.00	1.802	12.39	1.38	1.2	98.8	0.1	-1.72	0.64	0.67	1.98	3.3	0.003	0.64	0.0	0.04	16.49	0.00	2.479	9.35	2.04	2.1	97.9	0.0	0.75	1.10	0.63	0.76	2.15	12248	1548	8	0	8	0	0	logfile
✔	9JQN	61730	2025-09-18	2024-09-27	3.03	3.76	3.07	3.5	0.003	0.53	0.0	0.04	18.58	0.00	2.203	9.10	0.26	4.1	95.7	0.2	0.14	0.86	0.83	2.98	3.5	0.003	0.56	0.0	0.04	19.86	0.00	2.369	6.74	1.79	3.7	96.2	0.1	0.64	1.16	0.85	0.87	2.69	16485	1784	14	112	4	0	0	logfile
✘	9DRX	47132	2025-09-18	2024-09-26	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17398	2121	17	0	25	0	0	logfile
✔	9JPX	61717	2025-09-18	2024-09-26	2.95	3.75	3.00	3.4	0.006	0.54	0.0	0.04	13.84	0.00	2.204	6.12	2.29	4.7	95.3	0.0	0.95	0.89	0.87	3.55	3.5	0.002	0.54	0.0	0.04	15.73	0.00	2.432	4.36	1.15	3.2	96.8	0.0	1.33	2.44	0.85	0.87	2.97	15399	1784	11	58	4	2	0	logfile
✔	9JPU	61715	2025-09-18	2024-09-26	3.25	4.16	3.44	3.9	0.002	0.70	0.0	0.04	13.32	0.00	2.198	6.46	1.84	3.4	96.6	0.1	0.83	0.85	0.84	2.98	3.9	0.004	0.80	0.0	0.04	16.19	0.00	2.323	8.26	1.78	3.9	96.1	0.0	1.15	0.63	0.81	0.83	2.46	15963	1853	13	58	6	2	0	logfile
✔	9GVK	51637	2025-09-17	2024-09-25	3.5	3.08	3.16	3.2	0.004	0.71	0.0	0.05	18.62	0.00	2.026	8.11	0.39	5.7	94.3	0.0	-0.64	0.72	0.83	1.37	3.2	0.003	0.63	0.0	0.04	18.45	0.00	2.023	7.24	4.07	6.3	93.7	0.0	0.02	1.06	0.71	0.81	1.50	9673	1256	6	0	4	0	0	logfile
✘	9JoU	61685	2025-09-17	2024-09-25	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9913	1150	15	0	35	51	0	logfile
✔	9JoZ	61690	2025-09-17	2024-09-25	2.94	3.15	2.95	3.1	0.003	0.51	0.0	0.04	16.76	0.01	2.299	8.62	0.89	3.9	96.1	0.0	1.34	0.56	0.80	2.25	3.1	0.004	0.54	0.0	0.04	16.84	0.00	2.542	8.15	2.08	3.9	96.1	0.0	1.89	0.37	0.54	0.80	2.20	3143	390	1	0	0	0	0	logfile
✔	9JoX	61688	2025-09-17	2024-09-25	2.5	3.84	2.52	3.3	0.014	1.85	19.0	0.11	20.66	0.02	1.883	5.83	4.81	4.9	95.1	0.0	-2.87	0.75	0.91	5.23	3.3	0.005	0.73	0.0	0.04	17.46	0.00	2.419	7.53	1.39	1.3	98.7	0.0	3.78	1.04	0.72	0.90	3.80	11229	1315	15	0	37	150	0	logfile
✔	9DR1	47120	2025-09-19	2024-09-24	3.7	3.74	3.38	3.6	0.005	0.56	0.0	0.04	19.30	0.00	2.083	10.83	0.33	3.3	96.7	0.0	0.65	0.83	0.83	1.43	3.6	0.002	0.54	0.0	0.04	19.64	0.00	2.047	7.80	3.00	2.7	97.3	0.0	0.74	1.06	0.84	0.85	1.39	26245	3173	9	69	1	0	0	logfile

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