Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JiN	61511	2025-09-17	2024-09-12	2.56	2.06	2.56	2.0	0.005	0.63	0.0	0.05	15.59	0.01	2.197	7.07	0.31	7.3	92.7	0.0	-0.80	0.74	0.77	3.42	1.8	0.004	0.62	0.0	0.04	16.80	0.01	2.587	7.60	5.03	7.6	92.4	0.0	-0.92	0.75	0.74	0.76	3.72	5914	764	6	0	0	0	0	logfile
✔	9JiK	61508	2025-09-17	2024-09-12	2.91	2.01	2.92	1.9	0.007	0.84	0.0	0.05	9.67	0.01	2.323	2.79	0.00	5.2	94.8	0.0	-2.82	0.75	0.78	4.92	1.9	0.005	0.72	0.0	0.04	12.88	0.00	2.500	8.03	3.49	6.1	93.9	0.0	-1.05	1.03	0.77	0.80	4.83	5850	766	6	0	0	0	0	logfile
✔	9DMB	47000	2025-09-18	2024-09-12	4.27	5.77	4.35	4.3	0.002	0.57	0.0	0.04	12.96	0.00	2.144	3.74	0.14	5.5	94.5	0.0	-1.05	0.82	0.76	—	4.3	0.004	0.83	0.0	0.05	12.91	0.00	2.470	13.18	0.00	8.9	91.1	0.0	-1.88	1.30	0.86	0.86	—	21021	2448	54	0	141	0	0	logfile
✔	9DM7	46999	2025-09-17	2024-09-12	3.02	3.12	3.04	3.1	0.003	0.67	0.0	0.04	12.69	0.00	1.675	7.45	0.00	6.7	93.3	0.0	-0.87	0.59	0.75	1.57	3.1	0.003	0.60	0.0	0.04	14.72	0.00	2.624	5.29	1.86	6.8	93.2	0.0	-0.45	0.32	0.60	0.78	1.43	4646	598	3	0	0	0	0	logfile
✔	9DM0	46994	2025-09-18	2024-09-11	2.9	3.19	2.98	3.2	0.005	0.82	0.0	0.05	14.13	0.01	2.184	4.33	0.00	2.6	97.4	0.0	-1.17	0.65	0.75	3.00	3.2	0.005	0.68	0.0	0.05	15.81	0.00	2.437	8.17	1.97	2.9	97.1	0.0	-0.40	0.85	0.65	0.80	3.04	13642	1691	17	0	21	0	0	logfile
✔	9JiE	61503	2025-09-17	2024-09-11	2.76	2.07	2.76	2.0	0.008	0.68	0.0	0.04	14.16	0.01	2.200	8.62	0.79	5.1	94.9	0.0	-0.56	0.71	0.70	3.60	1.7	0.005	0.69	0.0	0.05	15.55	0.00	2.456	10.52	3.02	6.2	93.8	0.0	-0.60	0.42	0.73	0.72	3.99	5900	772	6	0	0	0	0	logfile
✔	9JiF	61504	2025-09-17	2024-09-11	2.79	2.04	2.79	1.9	0.006	0.75	0.0	0.04	14.57	0.01	2.209	4.40	0.32	4.4	95.6	0.0	0.11	0.79	0.82	2.82	1.8	0.003	0.59	0.0	0.04	15.35	0.00	2.570	5.81	4.02	4.0	96.0	0.0	0.30	0.78	0.80	0.83	4.02	5742	762	6	0	0	0	0	logfile
✔	9DLZ	46993	2025-09-18	2024-09-11	3.4	3.81	—	3.5	0.005	0.94	2.0	0.06	13.73	0.01	2.091	2.11	0.00	3.5	96.2	0.3	-2.70	0.91	0.89	2.57	3.4	0.005	0.61	0.0	0.04	14.90	0.00	1.867	4.16	1.13	3.9	96.0	0.1	0.68	0.96	0.92	0.90	2.16	15455	1927	11	0	4	0	0	logfile
✔	9JiJ	61507	2025-09-17	2024-09-11	2.64	2.10	2.64	1.8	0.004	0.63	0.0	0.04	14.81	0.01	2.235	6.41	0.80	5.3	94.7	0.0	-1.23	0.75	0.76	4.16	1.7	0.004	0.63	0.0	0.04	15.61	0.01	2.601	6.67	4.33	5.1	94.9	0.0	-0.70	0.40	0.75	0.76	4.31	5768	764	6	0	0	0	0	logfile
✔	9Jii	61506	2025-09-17	2024-09-11	2.54	1.93	2.54	1.8	0.007	0.68	0.0	0.05	14.72	0.02	2.083	5.76	0.63	5.5	94.5	0.0	-0.24	0.78	0.77	3.75	1.7	0.005	0.66	0.0	0.05	15.88	0.01	2.465	7.31	4.89	5.6	94.4	0.0	-0.61	0.41	0.78	0.77	4.17	5928	774	6	0	0	0	0	logfile
✔	9DLS	46984	2025-09-19	2024-09-11	3.37	2.33	3.38	2.1	0.002	0.43	0.0	0.04	11.66	0.00	1.956	4.92	2.00	1.9	98.1	0.0	2.43	0.77	0.77	1.94	2.1	0.003	0.57	0.0	0.04	15.77	0.00	1.870	4.83	3.38	2.1	97.9	0.0	1.97	0.54	0.78	0.78	1.58	21282	2648	13	22	12	0	0	logfile
✔	9JiG	61505	2025-09-17	2024-09-11	2.38	1.93	2.32	1.7	0.005	0.72	0.0	0.05	15.10	0.01	2.205	4.64	0.32	4.0	96.0	0.0	-0.02	0.80	0.81	4.41	1.7	0.003	0.57	0.0	0.04	16.55	0.00	2.580	5.52	2.53	3.1	96.9	0.0	-0.01	0.41	0.80	0.80	4.19	5784	764	6	0	0	0	0	logfile
✔	9GRC	51520	2025-09-17	2024-09-11	3.5	4.03	3.54	15.0	0.002	0.66	0.0	0.04	13.80	0.00	2.197	7.53	0.00	3.9	96.1	0.0	-1.19	0.41	0.06	0.59	9.8	0.003	0.70	0.0	0.04	16.02	0.00	2.438	10.57	1.34	4.7	95.3	0.0	-0.77	1.50	0.47	0.16	0.63	9717	1263	6	0	2	0	0	logfile
✔	9DLX	46992	2025-09-18	2024-09-11	2.91	3.64	—	3.2	0.005	0.87	0.0	0.06	13.63	0.01	2.096	1.07	0.00	3.8	96.1	0.1	-2.34	0.91	0.90	2.92	3.3	0.004	0.59	0.0	0.04	14.62	0.00	1.941	2.32	0.76	3.5	96.4	0.1	0.86	0.93	0.92	0.91	2.61	15551	1938	11	0	4	0	0	logfile
✘	9JHM	61487	2025-09-17	2024-09-10	3.2	4.30	3.32	3.9	0.006	1.04	0.0	0.06	15.78	0.01	1.811	11.30	0.15	5.4	94.5	0.1	-3.83	0.82	0.73	1.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6755	745	4	35	1	0	0	logfile
✔	9JHP	61489	2025-09-17	2024-09-10	3.35	2.39	3.49	2.1	0.003	0.68	0.0	0.04	14.73	0.01	2.204	10.62	0.00	4.0	96.0	0.0	-0.79	0.75	0.74	1.77	2.1	0.003	0.67	0.0	0.04	16.20	0.00	2.384	6.28	3.92	4.6	95.4	0.0	-0.02	0.47	0.75	0.75	1.67	8683	1129	5	0	0	0	0	logfile
✔	9JHL	61486	2025-09-18	2024-09-10	2.86	3.67	2.91	3.3	0.008	0.89	0.0	0.06	14.63	0.01	1.885	5.61	0.00	3.6	96.4	0.0	-2.68	0.82	0.74	3.53	3.3	0.003	0.70	0.0	0.04	17.16	0.00	2.075	11.71	0.97	3.8	96.2	0.0	0.76	1.10	0.86	0.89	2.41	13512	1490	10	70	4	0	0	logfile
✔	9DLD	46974	2025-09-19	2024-09-10	3.2	3.45	3.26	3.5	0.003	0.60	0.0	0.04	14.16	0.00	1.967	6.19	0.04	2.7	97.3	0.0	0.14	0.68	0.80	2.38	3.5	0.002	0.52	0.0	0.04	15.47	0.00	2.001	6.32	1.16	2.2	97.8	0.0	1.41	1.29	0.69	0.81	2.09	22996	3006	4	0	7	0	0	logfile
✔	9GR0	51516	2025-09-17	2024-09-10	2.61	3.37	2.64	3.2	0.003	0.53	0.0	0.05	15.36	0.00	2.191	4.23	0.00	3.8	96.2	0.0	-0.17	0.87	0.85	4.33	3.2	0.003	0.57	0.0	0.05	16.06	0.00	2.407	3.82	2.15	3.5	96.4	0.1	0.20	0.68	0.80	0.85	4.02	7213	903	8	0	4	23	0	logfile
✔	9DKX	46972	2025-09-18	2024-09-10	3.7	3.72	3.47	3.7	0.003	0.62	0.0	0.04	14.60	0.00	1.999	5.43	0.00	2.9	97.1	0.0	-0.07	0.72	0.79	1.57	3.7	0.003	0.54	0.0	0.04	15.87	0.00	1.927	6.21	1.22	2.1	97.9	0.0	1.57	0.95	0.75	0.79	1.42	20808	2646	3	0	7	0	0	logfile

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