Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9JHK	61485	2025-09-17	2024-09-10	3.42	4.72	3.49	4.0	0.014	1.15	0.0	0.07	16.10	0.01	1.829	9.78	0.00	6.2	93.8	0.0	-3.78	0.83	0.68	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6898	745	4	42	1	0	0	logfile
✔	9GR0	51516	2025-09-17	2024-09-10	2.61	3.37	2.64	3.2	0.003	0.53	0.0	0.05	15.36	0.00	2.191	4.23	0.00	3.8	96.2	0.0	-0.17	0.87	0.85	4.33	3.2	0.003	0.57	0.0	0.05	16.06	0.00	2.407	3.82	2.15	3.5	96.4	0.1	0.20	0.68	0.80	0.85	4.02	7213	903	8	0	4	23	0	logfile
✔	9JHP	61489	2025-09-17	2024-09-10	3.35	2.39	3.49	2.1	0.003	0.68	0.0	0.04	14.73	0.01	2.204	10.62	0.00	4.0	96.0	0.0	-0.79	0.75	0.74	1.77	2.1	0.003	0.67	0.0	0.04	16.20	0.00	2.384	6.28	3.92	4.6	95.4	0.0	-0.02	0.47	0.75	0.75	1.67	8683	1129	5	0	0	0	0	logfile
✔	9DLD	46974	2025-09-19	2024-09-10	3.2	3.45	3.26	3.5	0.003	0.60	0.0	0.04	14.16	0.00	1.967	6.19	0.04	2.7	97.3	0.0	0.14	0.68	0.80	2.38	3.5	0.002	0.52	0.0	0.04	15.47	0.00	2.001	6.32	1.16	2.2	97.8	0.0	1.41	1.29	0.69	0.81	2.09	22996	3006	4	0	7	0	0	logfile
✘	9JHM	61487	2025-09-17	2024-09-10	3.2	4.30	3.32	3.9	0.006	1.04	0.0	0.06	15.78	0.01	1.811	11.30	0.15	5.4	94.5	0.1	-3.83	0.82	0.73	1.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6755	745	4	35	1	0	0	logfile
✔	9GQZ	51515	2025-09-17	2024-09-10	2.36	3.46	2.56	3.2	0.002	0.50	0.0	0.04	13.89	0.00	2.177	6.29	0.00	3.7	96.3	0.0	0.40	0.85	0.84	4.34	3.2	0.004	0.63	0.0	0.05	15.27	0.00	2.436	7.86	1.85	3.9	96.1	0.0	0.30	0.67	0.79	0.84	3.87	7331	914	8	0	4	17	0	logfile
✔	9JH9	61476	2025-09-18	2024-09-09	3.42	4.52	3.54	4.0	0.009	0.96	0.0	0.06	15.13	0.01	1.407	5.87	0.15	4.6	95.4	0.0	-2.74	0.89	0.78	2.69	4.0	0.022	0.82	0.0	0.16	17.74	0.00	2.082	14.42	1.72	5.3	94.7	0.0	0.09	1.12	0.90	0.86	2.22	13509	1490	10	70	4	0	0	logfile
✔	9JHJ	61484	2025-09-17	2024-09-09	3.2	3.66	3.24	1.8	0.005	0.77	1.0	0.05	13.23	0.00	2.208	8.68	0.15	5.2	94.8	0.0	-0.60	0.89	0.88	2.66	1.5	0.004	0.61	0.0	0.04	14.26	0.00	2.429	7.05	1.50	4.5	95.5	0.0	0.20	1.21	0.89	0.89	2.39	7761	1105	6	0	1	0	0	logfile
✔	9DKJ	46959	2025-09-18	2024-09-09	2.8	3.08	2.89	3.1	0.003	0.63	0.0	0.04	14.02	0.00	2.048	4.04	0.00	2.0	98.0	0.0	0.38	0.69	0.83	3.18	3.1	0.003	0.53	0.0	0.04	15.95	0.00	1.950	5.94	1.14	1.5	98.5	0.0	2.20	0.95	0.69	0.84	3.16	18075	2291	2	0	6	0	0	logfile
✔	9JH8	61475	2025-09-17	2024-09-09	3.81	5.42	3.84	4.4	0.012	1.20	0.0	0.07	16.96	0.01	1.844	11.82	0.15	7.4	92.5	0.1	-3.72	0.84	0.67	-0.06	4.5	0.003	0.75	0.0	0.04	19.00	0.00	2.104	18.68	1.95	4.8	95.2	0.0	-0.62	1.49	0.87	0.81	0.41	6754	745	4	35	1	0	0	logfile
✔	9GQo	51510	2025-09-17	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.003	0.81	0.0	0.04	18.33	0.00	1.966	18.37	3.45	6.1	93.9	0.0	-0.93	0.55	0.82	0.81	0.04	6716	880	2	0	3	0	0	logfile
✔	9JH7	61474	2025-09-17	2024-09-09	3.4	4.90	3.51	4.3	0.007	1.02	0.0	0.06	13.42	0.01	2.278	9.96	0.00	8.7	91.1	0.1	-3.08	0.87	0.81	1.53	4.3	0.003	0.88	0.0	0.05	16.32	0.00	2.479	18.18	2.24	8.2	91.8	0.0	-1.28	1.42	0.88	0.83	0.86	6357	745	2	15	0	0	0	logfile
✘	9DKM	46962	2025-09-19	2024-09-09	3.4	3.53	3.35	3.6	0.003	0.56	0.0	0.04	14.19	0.00	2.065	4.93	0.00	2.5	97.5	0.0	0.42	0.76	0.85	2.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21339	2748	4	0	5	0	0	logfile
✔	9DK9	46948	2025-09-17	2024-09-08	2.68	2.76	2.74	3.4	0.003	0.56	0.0	0.04	17.61	0.00	2.166	5.61	0.78	1.2	98.8	0.0	1.20	0.44	0.68	1.44	3.4	0.003	0.55	0.0	0.04	17.92	0.00	2.388	5.74	2.60	2.3	97.7	0.0	1.36	1.07	0.46	0.74	2.08	7660	517	1	0	0	0	3844	logfile
✔	9DKH	46958	2025-09-19	2024-09-08	3.9	4.26	4.05	4.1	0.003	0.65	0.0	0.04	14.62	0.00	1.991	6.29	0.00	2.9	97.1	0.0	-0.12	0.80	0.78	1.06	4.1	0.003	0.60	0.0	0.04	16.24	0.00	1.954	8.83	1.67	2.1	97.9	0.0	1.10	0.40	0.80	0.79	0.78	21004	2691	3	0	5	0	0	logfile
✔	9DKA	46949	2025-09-17	2024-09-08	3.0	4.00	3.07	3.7	0.004	0.61	0.0	0.04	17.10	0.01	2.147	5.04	0.52	1.6	98.3	0.2	0.64	0.64	0.80	2.00	3.7	0.010	1.27	1.0	0.11	17.10	0.00	2.078	9.05	2.58	3.1	96.9	0.0	2.04	1.22	0.55	0.81	1.91	7726	517	2	0	1	0	3879	logfile
✔	9DKD	46953	2025-09-18	2024-09-08	3.3	3.62	3.43	3.6	0.003	0.66	0.0	0.04	15.11	0.00	2.072	7.00	0.00	2.6	97.4	0.0	0.12	0.72	0.75	2.00	3.6	0.004	0.81	1.0	0.04	16.62	0.00	2.026	11.00	1.84	3.5	96.5	0.0	0.87	0.35	0.73	0.76	1.56	17901	2313	2	0	5	0	0	logfile
✔	9DKE	46954	2025-09-18	2024-09-08	3.6	3.97	3.75	3.8	0.003	0.71	0.0	0.04	14.22	0.00	2.155	6.20	0.00	2.4	97.6	0.0	0.44	0.74	0.66	1.05	3.8	0.002	0.61	0.0	0.04	15.85	0.00	2.226	8.89	1.48	2.8	97.2	0.0	1.63	0.43	0.74	0.67	0.76	17457	2291	2	0	5	0	0	logfile
✘	9JH1	61469	2025-09-17	2024-09-08	3.07	3.80	3.07	3.6	0.008	1.14	0.0	0.04	18.63	0.03	2.104	17.80	1.81	6.8	93.2	0.0	-0.19	0.60	0.78	1.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4255	525	4	0	6	0	0	logfile
✔	9DK8	46946	2025-09-17	2024-09-08	3.3	3.83	3.42	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.207	9.10	0.00	6.4	93.6	0.0	-0.16	0.61	0.83	2.88	3.8	0.004	0.67	0.0	0.04	17.19	0.00	2.375	8.13	1.36	6.5	93.5	0.0	-0.15	0.43	0.61	0.83	2.17	6678	858	6	0	0	0	0	logfile

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