Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DK0	46942	2025-09-19	2024-09-07	3.7	3.93	3.76	3.9	0.003	0.60	0.0	0.04	14.38	0.00	2.029	5.96	0.00	2.6	97.4	0.0	0.48	0.77	0.82	1.50	3.9	0.002	0.55	0.0	0.04	15.85	0.00	2.007	6.08	1.57	2.8	97.2	0.0	1.85	0.31	0.77	0.82	1.24	21050	2690	3	0	5	0	0	logfile
✔	9JGH	61464	2025-09-19	2024-09-07	3.7	5.24	3.93	4.1	0.002	0.68	0.0	0.04	18.39	0.00	2.158	13.54	0.07	9.2	90.5	0.3	-1.91	0.88	0.74	0.42	4.2	0.003	0.71	0.0	0.05	18.71	0.00	2.269	16.02	4.78	10.5	89.2	0.3	-2.33	1.01	0.90	0.82	0.82	25621	3233	15	0	0	0	0	logfile
✔	9DJY	46940	2025-09-18	2024-09-07	3.6	3.97	3.78	3.9	0.003	0.59	0.0	0.04	14.62	0.00	2.031	4.84	0.00	2.2	97.8	0.0	0.56	0.74	0.81	1.41	3.9	0.002	0.51	0.0	0.04	16.06	0.00	1.965	7.01	1.53	2.3	97.7	0.0	2.12	0.33	0.75	0.82	1.34	18424	2341	2	0	5	0	0	logfile
✔	9DJZ	46941	2025-09-19	2024-09-07	3.9	4.28	4.13	4.2	0.003	0.62	0.0	0.04	14.44	0.00	2.020	7.21	0.04	2.9	97.1	0.0	-0.13	0.81	0.79	1.19	4.2	0.003	0.61	0.0	0.04	15.95	0.00	1.932	10.60	1.56	3.1	96.9	0.0	0.66	0.39	0.81	0.80	1.06	23913	3047	4	0	5	0	0	logfile
✔	9DiU	46919	2025-09-18	2024-09-06	4.1	4.42	4.18	4.2	0.003	0.72	0.0	0.04	14.95	0.00	2.257	7.72	0.05	2.4	97.6	0.0	-0.10	0.78	0.64	—	4.2	0.003	0.64	0.0	0.04	14.52	0.00	2.436	11.41	0.00	3.0	97.0	0.0	1.01	0.33	0.81	0.73	—	17847	2302	2	0	4	0	0	logfile
✔	9DJU	46938	2025-09-18	2024-09-06	4.0	4.31	4.14	4.2	0.003	0.71	0.0	0.05	14.72	0.00	2.208	7.56	0.00	2.9	97.1	0.0	-0.41	0.75	0.74	—	4.2	0.005	0.92	2.0	0.05	16.79	0.01	2.240	15.62	3.44	4.2	95.8	0.0	0.18	0.49	0.77	0.76	—	20656	2643	3	0	4	0	0	logfile
✔	9DJ7	46935	2025-09-19	2024-09-06	3.8	4.10	3.89	4.0	0.003	0.61	0.0	0.04	14.38	0.00	2.023	6.46	0.00	2.9	97.1	0.0	0.04	0.79	0.83	1.14	4.0	0.002	0.55	0.0	0.04	15.86	0.00	2.023	7.52	1.68	2.4	97.6	0.0	1.24	0.31	0.79	0.83	1.17	23851	3026	4	0	5	0	0	logfile
✔	9DJ8	46936	2025-09-18	2024-09-06	2.58	3.37	2.52	3.0	0.007	0.94	4.0	0.05	14.20	0.01	1.772	3.23	2.66	5.0	95.0	0.0	-1.93	0.66	0.85	5.05	3.0	0.003	0.54	0.0	0.04	14.43	0.00	2.211	1.48	0.48	4.4	95.6	0.0	0.20	0.49	0.66	0.87	4.23	14846	938	4	0	3	0	7277	logfile
✔	9JFX	61443	2025-09-17	2024-09-05	2.87	2.19	2.93	2.0	0.005	0.76	0.0	0.05	16.45	0.01	2.245	5.82	1.52	5.0	94.6	0.4	-0.14	0.76	0.77	2.43	2.0	0.003	0.58	0.0	0.04	17.20	0.00	2.524	4.25	4.32	3.3	96.7	0.0	0.81	0.40	0.79	0.78	2.14	8154	1053	5	0	0	0	0	logfile
✔	9JG0	61446	2025-09-17	2024-09-05	2.91	3.16	2.93	3.2	0.003	0.51	0.0	0.04	14.67	0.00	2.239	8.70	0.13	1.9	98.1	0.0	0.72	0.56	0.64	2.97	3.2	0.005	0.71	0.0	0.04	16.68	0.00	2.501	8.77	4.53	1.9	98.1	0.0	1.02	1.28	0.64	0.79	2.75	7271	950	4	0	0	0	0	logfile
✔	9DiL	46912	2025-09-17	2024-09-05	3.3	3.74	3.09	3.5	0.003	0.52	0.0	0.04	10.16	0.00	2.211	4.20	1.55	3.8	96.2	0.0	2.06	0.69	0.88	2.33	3.5	0.003	0.64	0.0	0.04	13.99	0.00	2.477	4.81	1.35	3.9	96.0	0.1	1.94	0.60	0.68	0.89	2.08	9783	1236	5	0	4	0	0	logfile
✔	9Di3	46897	2025-09-18	2024-09-05	4.1	4.34	4.15	4.2	0.004	0.68	0.0	0.05	14.95	0.00	2.237	9.29	0.00	3.7	96.3	0.0	0.12	0.78	0.75	—	4.2	0.003	0.66	0.0	0.04	14.61	0.00	2.252	11.36	0.05	2.7	97.3	0.0	0.93	1.21	0.78	0.75	—	17694	2282	2	0	4	0	0	logfile
✔	9DiS	46917	2025-09-17	2024-09-05	2.51	2.72	2.54	2.7	0.003	0.56	0.0	0.04	12.98	0.00	2.190	10.64	0.00	2.6	97.4	0.0	0.26	0.62	0.76	5.02	2.7	0.003	0.56	0.0	0.04	16.38	0.00	2.594	10.28	2.19	1.9	98.1	0.0	0.48	1.06	0.66	0.81	4.44	5721	741	2	0	0	0	0	logfile
✔	9DiA	46902	2025-09-18	2024-09-05	2.97	3.51	3.01	3.4	0.003	0.56	0.0	0.05	15.04	0.00	1.649	7.05	0.42	4.7	95.3	0.0	-0.34	0.78	0.81	3.59	3.4	0.004	0.94	1.0	0.05	14.94	0.00	1.910	5.49	0.99	4.7	95.3	0.0	-0.56	1.17	0.78	0.82	3.80	12709	883	10	0	23	0	5806	logfile
✔	9JFY	61444	2025-09-17	2024-09-05	3.21	3.44	3.23	3.5	0.003	0.46	0.0	0.04	15.56	0.00	2.208	5.34	0.00	1.9	98.1	0.0	1.40	0.58	0.66	1.94	3.5	0.003	0.58	0.0	0.04	16.63	0.00	2.317	5.00	3.29	1.8	98.2	0.0	1.13	0.72	0.63	0.77	1.70	8805	1133	7	0	1	0	0	logfile
✔	9GoB	51496	2025-09-18	2024-09-05	3.2	4.17	3.23	3.5	0.008	0.73	0.0	0.05	13.18	0.01	1.947	4.96	0.00	3.9	96.1	0.0	-1.88	0.78	0.88	3.69	3.4	0.005	0.72	0.0	0.04	13.85	0.00	1.863	6.29	0.32	3.0	97.0	0.0	1.58	1.20	0.79	0.90	2.92	14814	1879	11	0	10	0	0	logfile
✔	9DiJ	46907	2025-09-19	2024-09-05	4.07	4.30	4.18	4.3	0.002	0.50	0.0	0.04	14.42	0.00	2.261	6.99	0.37	9.5	90.5	0.0	-1.65	0.59	0.68	—	4.4	0.005	0.77	0.0	0.04	14.59	0.00	2.501	14.18	0.04	9.8	90.1	0.0	-1.26	1.28	0.58	0.71	—	24540	3015	5	0	0	0	0	logfile
✔	9DiR	46916	2025-09-17	2024-09-05	2.97	3.27	3.04	3.3	0.004	0.58	0.0	0.04	12.37	0.00	2.124	10.27	0.00	3.3	96.7	0.0	0.24	0.37	0.56	1.55	3.3	0.003	0.60	0.0	0.04	16.61	0.00	2.492	10.01	3.85	3.2	96.8	0.0	-0.32	1.29	0.48	0.72	2.98	5889	756	2	0	0	0	0	logfile
✔	9JFW	61442	2025-09-17	2024-09-05	3.13	2.26	3.17	2.1	0.003	0.62	1.0	0.04	16.74	0.00	2.156	10.42	0.48	4.8	95.2	0.0	-0.38	0.75	0.74	2.09	2.0	0.003	0.62	0.0	0.04	17.18	0.00	2.524	9.46	4.57	4.0	96.0	0.0	-0.09	0.50	0.77	0.76	1.77	7990	1037	5	0	0	0	0	logfile
✔	9DiG	46905	2025-09-17	2024-09-05	3.22	3.49	3.26	4.0	0.007	0.76	0.0	0.03	25.27	0.00	2.126	19.21	0.00	0.0	0.0	0.0	—	0.83	0.83	—	4.0	0.007	0.74	0.0	0.04	24.63	0.00	2.153	17.74	0.00	0.0	0.0	0.0	—	0.94	0.83	0.85	—	4066	0	4	192	6	0	0	logfile

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