Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9o51	70120	2025-09-17	2025-04-09	3.4	3.65	3.40	3.6	0.002	0.40	0.0	0.03	13.02	0.00	2.368	2.68	0.00	1.3	98.7	0.0	1.11	0.62	0.86	2.30	3.6	0.002	0.46	0.0	0.03	15.88	0.00	2.434	4.41	2.09	1.3	98.7	0.0	3.89	1.57	0.61	0.86	1.30	12302	1596	13	0	6	0	0	logfile
✔	9UET	64091	2025-09-17	2025-04-09	3.68	3.90	3.67	3.9	0.009	1.42	10.0	0.06	15.61	0.01	1.497	15.67	0.32	5.5	94.5	0.0	-0.36	0.51	0.76	1.39	3.9	0.003	0.69	0.0	0.04	16.89	0.00	1.944	9.05	1.75	4.0	96.0	0.0	1.33	1.17	0.47	0.73	0.97	5906	736	4	0	6	0	0	logfile
✔	9o4A	70091	2025-09-17	2025-04-08	2.8	2.25	2.78	2.0	0.008	0.86	0.0	0.05	13.62	0.01	2.246	10.40	0.00	9.3	90.7	0.1	-1.88	0.76	0.75	2.43	2.1	0.003	0.68	0.0	0.04	16.87	0.01	2.469	7.53	2.13	8.5	91.5	0.0	-0.73	0.64	0.77	0.76	2.21	8804	1116	6	0	3	0	0	logfile
✔	9o4K	70104	2025-09-17	2025-04-08	2.76	3.66	2.70	3.3	0.002	0.60	0.0	0.04	15.82	0.01	2.370	5.17	1.56	2.4	97.6	0.0	0.73	0.80	0.74	1.57	3.3	0.004	0.71	0.0	0.04	16.30	0.00	2.308	7.09	4.95	4.2	95.8	0.0	1.07	1.08	0.78	0.73	1.88	7738	1023	5	0	1	0	0	logfile
✔	9o4J	70103	2025-09-17	2025-04-08	3.06	3.77	3.08	3.5	0.004	0.68	0.0	0.05	15.97	0.00	2.526	5.99	2.00	5.3	94.7	0.0	-0.12	0.87	0.86	3.05	3.5	0.003	0.56	0.0	0.04	15.80	0.00	2.550	4.28	2.33	3.7	96.3	0.0	1.59	0.48	0.83	0.85	2.86	5958	781	3	0	1	0	0	logfile
✔	9o48	70089	2025-09-18	2025-04-08	3.1	3.33	3.09	3.3	0.002	0.35	0.0	0.03	12.86	0.00	2.308	3.19	0.00	1.4	98.6	0.0	0.27	0.63	0.86	3.69	3.3	0.003	0.50	0.0	0.04	15.43	0.00	2.292	5.19	0.94	1.6	98.4	0.0	3.65	0.96	0.63	0.86	3.24	16094	2044	13	0	18	0	0	logfile
✔	9UD9	64065	2025-09-18	2025-04-07	3.11	3.38	3.18	3.4	0.003	0.65	0.0	0.04	14.29	0.00	1.925	3.33	0.84	2.8	97.1	0.1	0.45	0.59	0.82	3.01	3.4	0.004	0.71	0.0	0.04	15.71	0.00	2.496	5.04	2.92	3.2	96.7	0.1	0.29	0.45	0.73	0.89	2.83	14665	1894	11	0	7	2	0	logfile
✔	9UDA	64066	2025-09-18	2025-04-06	2.61	2.82	2.63	2.9	0.004	0.64	0.0	0.04	14.61	0.01	1.545	2.81	0.38	2.3	97.7	0.0	0.70	0.41	0.66	4.07	2.9	0.003	0.58	0.0	0.04	15.72	0.00	2.498	3.41	1.92	2.4	97.6	0.0	0.76	2.20	0.68	0.87	3.75	14963	1921	14	0	8	37	0	logfile
✔	9o38	70072	2025-09-17	2025-04-06	3.0	3.78	3.02	3.4	0.003	0.56	0.0	0.04	17.71	0.00	2.062	7.07	2.44	2.5	97.5	0.0	1.09	0.67	0.70	1.62	3.5	0.003	0.73	0.0	0.04	17.40	0.00	2.381	9.72	2.81	2.7	97.3	0.0	1.04	0.88	0.68	0.81	2.23	9824	1258	6	0	0	0	0	logfile
✔	9UD2	64059	2025-09-18	2025-04-06	2.59	2.79	2.59	2.8	0.009	0.75	0.0	0.05	15.49	0.01	2.131	4.49	1.61	3.3	96.6	0.1	0.12	0.68	0.87	3.28	2.8	0.003	0.61	0.0	0.04	16.20	0.00	2.484	4.15	2.58	3.1	96.9	0.1	0.43	0.27	0.67	0.86	2.84	14763	1900	12	0	8	5	0	logfile
✔	9UD8	64064	2025-09-18	2025-04-06	3.75	4.05	3.79	4.0	0.008	0.89	0.0	0.04	16.09	0.00	2.199	10.13	3.50	3.7	96.3	0.0	-0.17	0.72	0.80	1.34	4.0	0.007	0.85	0.0	0.05	16.77	0.01	2.468	9.05	5.11	5.0	95.0	0.0	-0.09	0.96	0.72	0.80	1.05	14706	1894	11	0	8	0	0	logfile
✔	9UDi	64070	2025-09-17	2025-04-06	3.01	3.17	2.93	3.2	0.004	0.66	0.0	0.04	24.51	0.01	2.120	12.75	0.00	10.6	89.4	0.0	-1.97	0.56	0.61	1.59	3.2	0.003	0.63	0.0	0.03	24.59	0.00	2.175	9.09	2.05	9.4	90.6	0.0	-1.19	1.01	0.56	0.60	1.39	4986	257	4	140	0	0	0	logfile
✔	9UDG	64069	2025-09-18	2025-04-06	3.18	2.98	2.77	3.0	0.004	0.61	0.0	0.04	14.57	0.00	2.053	5.05	0.26	3.0	97.0	0.0	0.76	0.43	0.69	3.76	3.0	0.003	0.61	0.0	0.04	16.14	0.00	2.501	3.70	2.82	2.5	97.5	0.0	0.56	1.01	0.68	0.86	3.62	15132	1919	16	0	12	61	0	logfile
✔	9UDF	64068	2025-09-18	2025-04-06	2.93	3.24	3.05	3.2	0.004	0.68	0.0	0.04	17.07	0.01	2.146	6.23	1.98	4.7	95.1	0.2	-0.45	0.60	0.84	3.28	3.2	0.003	0.59	0.0	0.04	16.97	0.00	2.418	5.30	2.23	4.5	95.4	0.1	0.03	0.95	0.60	0.85	2.98	15124	1922	12	0	12	17	0	logfile
✔	9UD6	64063	2025-09-18	2025-04-06	2.65	2.89	2.66	2.9	0.008	0.61	0.0	0.04	13.84	0.00	2.055	2.43	0.58	3.0	97.0	0.0	1.26	0.41	0.66	3.54	2.9	0.006	0.73	0.0	0.05	15.81	0.01	2.388	3.65	2.07	3.2	96.8	0.0	0.44	0.43	0.69	0.87	3.63	14743	1894	12	0	9	2	0	logfile
✔	9UD5	64062	2025-09-18	2025-04-06	2.9	3.19	2.94	3.2	0.004	0.67	0.0	0.04	13.90	0.00	2.209	3.13	0.07	2.6	97.2	0.2	0.30	0.45	0.70	4.18	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.411	3.52	2.00	2.8	97.1	0.1	0.16	1.31	0.68	0.87	3.96	14496	1921	15	0	10	37	0	logfile
✔	9UD4	64061	2025-09-18	2025-04-06	3.31	3.66	3.32	3.7	0.003	0.69	0.0	0.04	15.44	0.00	2.169	6.13	1.36	3.2	96.7	0.1	-0.14	0.70	0.83	2.35	3.7	0.010	0.83	0.0	0.04	16.09	0.00	2.468	5.38	2.59	2.9	97.1	0.1	0.00	0.35	0.69	0.85	2.38	14720	1894	15	0	8	5	0	logfile
✔	9o12	49995	2025-09-18	2025-04-03	4.3	5.06	4.45	4.6	0.003	0.47	0.0	0.04	10.08	0.00	2.105	4.26	1.19	4.3	95.7	0.0	1.53	0.55	0.66	—	4.6	0.003	0.57	0.0	0.04	11.44	0.00	2.082	7.24	0.11	4.8	95.2	0.0	1.29	1.09	0.55	0.76	—	17136	1044	4	0	0	0	8772	logfile
✔	9o10	49993	2025-09-18	2025-04-03	3.0	3.74	3.14	3.5	0.003	0.46	0.0	0.04	9.24	0.00	2.209	4.31	0.23	1.9	98.1	0.0	2.37	0.64	0.84	3.37	3.6	0.004	0.78	0.0	0.04	14.81	0.01	2.231	5.76	2.00	1.8	98.2	0.0	3.13	1.33	0.53	0.80	3.12	16488	1044	4	0	0	0	8360	logfile
✔	9o11	49994	2025-09-18	2025-04-03	3.3	4.08	3.43	3.9	0.004	0.49	0.0	0.04	13.21	0.00	2.017	3.15	0.11	2.0	98.0	0.0	1.71	0.64	0.84	2.47	3.9	0.003	0.55	0.0	0.03	15.01	0.00	2.336	3.68	0.97	1.9	98.1	0.0	3.19	0.76	0.59	0.85	2.16	17136	1044	4	0	0	0	8772	logfile

• ← previous
• Page 5 of 639
• next →