Table showing results for October 2020

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A91	11681	2020-10-04	2020-09-01	3.6	3.73	3.57	3.7	0.007	1.13	0.0	0.05	15.20	0.01	2.194	3.25	0.81	4.9	95.1	0.0	-2.81	0.75	0.82	2.55	3.7	0.003	0.62	0.0	0.04	14.64	0.00	2.203	5.47	0.00	3.1	96.9	0.0	-0.44	2.22	0.75	0.82	2.29	6915	839	5	0	10	0	0	logfile
✔	7A94	11684	2020-10-06	2020-09-01	3.9	4.30	4.00	4.0	0.007	1.14	3.0	0.05	13.52	0.01	2.085	3.38	0.87	6.8	93.2	0.0	-1.82	0.89	0.84	1.86	4.0	0.003	0.63	0.0	0.04	12.94	0.00	2.165	7.68	0.00	4.1	95.9	0.0	-0.14	1.63	0.89	0.85	1.65	30463	3825	8	0	24	0	0	logfile
✔	7A95	11685	2020-10-06	2020-09-01	4.3	4.82	4.40	4.3	0.004	0.91	2.0	0.04	5.77	0.00	2.226	3.48	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	4.4	0.006	0.79	0.0	0.04	9.06	0.00	2.050	15.27	0.00	6.4	93.6	0.0	-1.27	1.80	0.89	0.85	—	29887	3794	4	0	0	0	0	logfile
✔	7A97	11687	2020-10-06	2020-09-01	4.4	5.14	4.55	4.5	0.004	0.91	1.0	0.04	5.51	0.00	2.074	4.84	0.26	10.3	89.7	0.0	-4.43	0.88	0.78	—	4.5	0.005	0.79	0.0	0.04	10.04	0.00	2.049	20.95	0.03	6.1	93.9	0.0	-1.70	2.65	0.90	0.84	—	34626	4373	5	0	0	0	0	logfile
✔	7A96	11686	2020-10-06	2020-09-01	4.8	5.69	4.91	4.9	0.004	0.91	1.0	0.04	5.85	0.00	2.236	3.88	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.005	0.74	0.0	0.04	9.43	0.00	2.070	19.21	0.00	6.2	93.8	0.0	-1.23	1.86	0.89	0.84	—	29811	3783	4	0	0	0	0	logfile
✔	7JYi	22526	2020-10-04	2020-08-30	3.4	3.52	—	3.5	0.008	1.05	0.0	0.05	16.05	0.00	2.104	14.04	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.004	0.68	0.0	0.04	13.38	0.00	2.129	9.61	0.00	8.7	91.2	0.2	-1.98	1.30	0.43	0.84	2.34	8807	1152	4	0	0	0	0	logfile
✔	7A6A	11668	2020-10-06	2020-08-25	1.15	1.12	—	1.2	0.018	1.77	24.0	0.16	14.70	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.65	0.78	9.02	1.2	0.003	0.66	0.0	0.04	15.37	0.01	2.105	3.47	1.82	1.8	98.2	0.0	4.41	0.40	0.69	0.80	8.89	41613	4152	72	0	32	4621	0	logfile
✔	7A6B	11669	2020-10-06	2020-08-25	1.33	1.20	—	1.3	0.014	1.67	24.0	0.12	15.33	0.01	1.893	4.57	4.17	1.2	98.8	0.0	2.52	0.71	0.82	9.13	1.3	0.003	0.75	0.0	0.04	14.89	0.00	2.174	3.52	1.79	1.8	98.2	0.0	4.69	0.38	0.74	0.83	9.05	41494	4152	72	0	32	3854	0	logfile
✔	7A5R	11648	2020-10-05	2020-08-21	3.7	3.90	3.68	3.8	0.005	1.10	0.0	0.05	13.96	0.01	2.218	3.82	0.67	7.6	92.3	0.2	-1.97	0.73	0.78	2.27	3.8	0.007	0.86	0.0	0.05	13.15	0.01	2.260	7.22	0.17	7.9	92.1	0.0	-1.45	1.28	0.75	0.80	3.19	10608	1358	8	0	4	0	0	logfile
✔	7A5S	11647	2020-10-05	2020-08-21	3.9	4.25	3.94	4.0	0.006	1.19	4.0	0.06	13.36	0.01	1.188	5.66	0.65	6.9	92.7	0.4	-2.00	0.79	0.67	1.92	4.0	0.009	0.90	0.0	0.05	12.43	0.00	2.085	13.03	0.00	9.8	90.2	0.0	-2.06	0.94	0.88	0.83	2.32	16608	2124	8	0	4	0	0	logfile
✔	7CTT	30469	2020-10-04	2020-08-20	3.2	3.40	—	3.3	0.009	0.91	0.0	0.04	12.55	0.00	2.123	10.17	0.45	4.7	95.3	0.0	-2.80	0.71	0.76	2.65	3.4	0.003	0.57	0.0	0.04	12.60	0.00	2.153	12.21	0.00	4.4	95.6	0.0	-0.85	0.43	0.71	0.76	2.92	8912	1031	7	34	4	0	0	logfile
✔	7JSV	22460	2020-10-05	2020-08-16	3.9	3.98	—	4.0	0.018	1.68	0.0	0.10	10.55	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.65	0.0	0.04	14.10	0.00	2.177	9.33	0.00	0.6	99.4	0.0	-0.27	0.91	0.65	0.84	2.82	22140	2706	82	0	41	0	0	logfile
✔	7JPo	22417	2020-10-05	2020-08-09	3.2	2.52	—	3.2	0.007	1.33	0.0	0.06	15.53	0.01	2.073	2.36	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.003	0.54	0.0	0.04	15.47	0.00	2.011	5.56	0.00	3.0	97.0	0.0	0.70	0.49	0.79	0.80	2.42	16087	1966	9	0	7	0	0	logfile
✔	7JPP	22418	2020-10-05	2020-08-09	3.7	3.83	—	3.8	0.008	1.38	0.0	0.06	15.25	0.01	2.061	3.32	0.00	1.6	98.4	0.0	-1.90	0.72	0.78	2.10	3.8	0.003	0.57	0.0	0.04	15.30	0.00	2.023	6.00	0.00	2.6	97.4	0.0	0.48	2.23	0.74	0.79	1.78	14872	1816	7	0	4	0	0	logfile
✔	7JPR	22420	2020-10-05	2020-08-09	4.0	4.91	—	3.3	0.007	1.41	0.0	0.06	15.00	0.01	2.048	5.46	0.00	3.6	96.4	0.0	-2.74	0.82	0.68	—	3.6	0.002	0.63	0.0	0.04	14.33	0.00	2.019	13.42	0.00	3.6	96.4	0.0	0.48	1.89	0.86	0.75	—	16737	2045	8	0	6	0	0	logfile
✔	7JPS	22421	2020-10-05	2020-08-09	4.4	5.23	—	3.8	0.007	1.39	1.0	0.06	16.52	0.01	2.102	4.24	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.9	0.003	0.66	0.0	0.04	15.92	0.00	1.958	14.73	0.00	3.7	96.3	0.0	-0.28	2.76	0.84	0.72	—	16352	1932	11	26	7	0	0	logfile
✔	7JPQ	22419	2020-10-05	2020-08-09	3.5	3.56	—	3.5	0.008	1.37	0.0	0.06	14.27	0.01	2.088	2.16	0.00	3.0	97.0	0.0	-2.05	0.71	0.81	2.78	3.5	0.003	0.52	0.0	0.04	14.79	0.00	2.069	4.36	0.00	2.7	97.3	0.0	0.65	0.61	0.73	0.82	1.80	13863	1691	6	0	4	0	0	logfile
✔	7JoA	22409	2020-10-05	2020-08-06	3.3	3.05	—	3.2	0.009	0.97	0.0	0.04	26.00	0.01	2.206	6.07	0.00	6.5	93.5	0.0	-0.33	0.79	0.82	1.49	3.2	0.004	0.63	0.0	0.04	25.87	0.00	2.240	5.85	0.00	2.7	97.3	0.0	1.45	4.79	0.80	0.83	2.11	14994	1125	11	290	1	0	0	logfile
✔	7Jo9	22408	2020-10-05	2020-08-06	3.3	3.00	—	3.2	0.008	0.94	0.0	0.04	26.00	0.01	2.222	4.77	0.41	5.1	94.9	0.0	0.34	0.79	0.82	1.58	3.2	0.004	0.59	0.0	0.04	26.15	0.00	2.206	4.95	0.00	2.8	97.2	0.0	1.54	0.63	0.80	0.82	2.08	14994	1125	11	290	1	0	0	logfile
✔	7JM6	22386	2020-10-05	2020-07-31	2.92	2.95	—	2.9	0.006	1.08	0.0	0.18	13.49	0.00	1.907	5.85	0.72	2.3	97.7	0.0	1.30	0.58	0.81	3.97	2.9	0.004	0.57	0.0	0.04	13.29	0.01	1.901	6.08	0.00	2.9	97.1	0.0	1.27	1.13	0.58	0.82	3.92	21084	1334	6	0	12	72	10504	logfile

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