Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VH3	31985	2021-10-04	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	8.03	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.011	1.13	1.0	0.04	15.52	0.00	2.190	12.92	0.21	7.6	92.3	0.1	-1.20	1.67	0.71	0.73	1.24	12749	1612	1	0	0	0	0	logfile
✔	7VH1	31983	2021-10-04	2021-09-20	4.2	4.15	—	4.0	0.009	1.32	0.0	0.07	12.24	0.01	2.222	5.93	0.74	11.9	87.8	0.2	-5.32	0.79	0.75	—	4.0	0.003	0.74	0.0	0.04	12.82	0.00	2.155	11.40	0.00	8.3	91.7	0.0	-1.77	3.34	0.79	0.75	—	13156	1661	2	0	2	0	0	logfile
✔	7VGQ	31975	2021-10-04	2021-09-18	4.0	4.26	—	4.2	0.009	1.27	2.0	0.07	12.16	0.01	2.211	7.14	0.74	13.9	85.9	0.2	-5.44	0.71	0.75	—	4.2	0.004	0.75	0.0	0.04	15.07	0.01	2.128	9.01	0.20	7.4	92.5	0.1	-2.07	0.72	0.71	0.76	—	13156	1661	2	0	2	0	0	logfile
✔	7S67	24852	2021-10-05	2021-09-13	3.8	3.64	3.80	3.9	0.013	1.39	0.0	0.07	11.90	0.01	1.815	5.43	0.00	1.5	98.5	0.0	0.25	0.70	0.73	2.10	3.8	0.004	0.76	0.0	0.05	16.27	0.01	1.977	14.59	0.78	2.6	97.4	0.0	-0.13	2.77	0.71	0.80	1.45	23058	2892	12	0	24	0	0	logfile
✔	7S65	24850	2021-10-05	2021-09-13	3.2	3.04	3.23	3.3	0.014	1.46	0.0	0.07	11.66	0.01	1.385	8.18	0.26	2.0	98.0	0.0	0.19	0.64	0.74	3.55	3.2	0.012	0.89	0.0	0.04	15.78	0.01	1.895	10.32	0.35	2.7	97.3	0.0	0.25	0.70	0.65	0.78	3.13	22049	2760	12	0	24	0	0	logfile
✔	7S66	24851	2021-10-05	2021-09-13	2.8	3.06	2.88	3.1	0.013	1.34	0.0	0.06	10.54	0.01	1.770	2.17	0.00	1.4	98.6	0.0	0.50	0.75	0.83	3.82	3.0	0.005	0.59	0.0	0.04	16.41	0.00	1.910	5.96	2.21	1.8	98.2	0.0	0.73	1.37	0.76	0.86	3.58	23242	2910	12	0	24	0	0	logfile
✔	7PKP	13476	2021-10-04	2021-08-26	3.1	3.25	—	3.2	0.008	0.69	0.0	0.04	14.18	0.00	2.238	15.15	0.00	8.7	91.3	0.0	-4.06	0.76	0.83	2.79	3.2	0.003	0.51	0.0	0.04	16.02	0.00	2.318	7.31	0.26	5.1	94.9	0.0	-0.51	1.16	0.76	0.85	2.58	20360	2504	8	0	0	0	0	logfile
✔	7PKo	13474	2021-10-04	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.77	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.004	0.69	0.0	0.04	16.13	0.00	2.184	11.29	0.62	5.7	94.3	0.0	-0.58	0.68	0.77	0.82	1.98	20368	2504	8	0	0	0	0	logfile
✔	7RYP	24744	2021-10-03	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.18	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.5	0.003	0.67	0.0	0.04	12.89	0.00	2.002	17.17	0.00	12.4	87.4	0.1	-1.37	1.46	0.78	0.73	—	11293	725	2	0	0	0	5599	logfile
✔	7RYQ	24745	2021-10-03	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	37.87	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.76	0.0	0.04	14.10	0.00	2.147	15.12	0.00	5.6	94.4	0.0	0.11	1.30	0.84	0.75	—	4332	527	1	0	0	0	0	logfile
✘	7RX5	24725	2021-10-03	2021-08-21	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9348	1189	41	0	0	0	0	logfile
✘	7RX4	24724	2021-10-04	2021-08-21	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14012	1798	62	0	0	0	0	logfile
✘	7PiJ	13438	2021-10-03	2021-08-20	3.47	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.15	0.11	10.6	89.3	0.1	-3.26	0.49	0.51	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✔	7V6Z	31754	2021-10-03	2021-08-20	3.64	3.89	—	3.9	0.015	1.67	6.0	0.24	14.44	0.01	2.282	9.52	10.76	3.2	96.5	0.3	1.70	0.64	0.71	1.36	3.9	0.006	0.92	0.0	0.08	14.97	0.01	2.162	15.27	1.18	4.0	95.9	0.1	0.48	1.05	0.65	0.74	1.47	7082	1008	3	0	6	0	0	logfile
✔	7V6Y	31753	2021-10-03	2021-08-20	3.5	3.75	—	3.8	0.019	1.84	9.0	0.32	15.94	0.01	2.258	11.23	11.06	5.3	94.5	0.2	0.59	0.59	0.74	1.29	3.8	0.004	0.92	0.0	0.10	16.01	0.01	2.054	11.71	0.57	4.6	95.4	0.0	0.94	1.23	0.64	0.76	1.95	7484	990	3	0	8	0	0	logfile
✔	7RW2	24708	2021-10-06	2021-08-19	3.5	3.76	3.53	3.8	0.005	0.95	9.0	0.07	13.38	0.01	2.254	6.27	0.03	3.6	96.4	0.0	-1.51	0.71	0.70	1.71	3.7	0.005	0.71	0.0	0.05	15.67	0.01	2.184	11.62	0.41	5.6	94.4	0.0	-1.01	1.33	0.74	0.76	1.75	31614	3951	18	0	60	0	0	logfile
✘	7PHP	13424	2021-10-03	2021-08-18	3.47	3.48	—	3.6	0.017	0.90	0.0	0.05	14.25	0.01	2.182	6.49	0.11	7.0	93.0	0.0	-1.50	0.72	0.83	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1134	8	0	0	21	0	logfile
✔	7V5M	31727	2021-10-07	2021-08-17	3.88	4.12	—	3.8	0.002	0.61	0.0	0.04	7.67	0.00	2.155	9.46	0.00	3.0	96.9	0.1	-2.87	0.80	0.69	1.03	3.8	0.004	0.78	0.0	0.04	14.36	0.00	2.090	15.04	0.40	3.1	96.9	0.0	0.19	1.86	0.90	0.85	2.19	45340	6198	28	0	0	0	0	logfile
✔	7V5G	31724	2021-10-07	2021-08-17	4.47	4.49	—	3.6	0.002	0.50	1.0	0.04	7.72	0.00	2.210	9.83	0.08	5.7	94.2	0.1	-2.80	0.86	0.71	—	3.8	0.004	0.75	0.0	0.04	12.33	0.00	2.003	22.10	0.00	4.9	95.1	0.0	-0.84	2.29	0.90	0.79	—	48150	6193	28	0	0	0	0	logfile
✔	7RTU	24689	2021-10-03	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.03	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.004	0.58	0.0	0.04	17.09	0.01	2.203	7.95	0.78	2.7	97.3	0.0	4.03	0.37	0.62	0.74	0.21	5962	754	6	0	12	0	0	logfile

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