Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JEK	36191	2024-10-11	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.004	1.09	0.0	0.06	16.81	0.01	1.798	6.26	2.26	5.1	94.8	0.1	0.45	0.21	0.71	0.88	4.17	8623	1089	5	0	6	0	0	logfile
✔	8P2Z	17380	2024-10-09	2023-05-16	3.5	3.69	3.44	3.7	0.004	0.62	0.0	0.04	14.81	0.01	2.219	7.40	0.42	2.7	97.3	0.0	1.32	0.54	0.79	2.49	3.7	0.004	0.55	0.0	0.04	15.37	0.00	2.627	6.42	3.99	2.7	97.3	0.0	2.35	0.41	0.53	0.79	1.99	4641	603	4	0	3	0	0	logfile
✔	8JEY	36203	2024-10-09	2023-05-16	2.6	2.46	2.42	2.7	0.004	0.75	0.0	0.06	11.67	0.00	2.339	4.75	0.00	4.3	95.7	0.0	-4.60	0.41	0.80	6.81	2.7	0.004	0.65	0.0	0.05	16.57	0.00	2.643	1.74	2.24	5.7	94.3	0.0	-3.40	0.45	0.44	0.83	6.71	3060	432	6	0	0	0	0	logfile
✔	8JEW	36201	2024-10-10	2023-05-16	2.49	2.22	2.40	2.4	0.015	1.79	0.0	0.08	15.57	0.01	1.932	6.25	0.48	3.0	97.0	0.0	-0.48	0.62	0.79	4.58	2.4	0.003	0.66	0.0	0.04	16.03	0.01	2.213	6.49	2.02	1.7	98.3	0.0	2.25	1.07	0.73	0.84	3.41	8284	1024	4	0	20	6	0	logfile
✔	8JEZ	36204	2024-10-10	2023-05-16	2.6	2.34	2.58	2.6	0.016	1.79	0.0	0.10	17.04	0.02	2.325	6.13	0.48	2.2	97.8	0.0	-0.01	0.64	0.80	3.85	2.6	0.003	0.64	0.0	0.04	16.40	0.00	2.453	8.08	2.26	1.6	98.4	0.0	2.46	2.04	0.70	0.82	3.21	8282	1026	6	0	16	0	0	logfile
✔	8JEV	36200	2024-10-14	2023-05-16	3.06	3.54	3.27	3.5	0.007	0.73	0.0	0.04	14.19	0.01	1.812	14.57	0.00	5.3	94.6	0.2	-0.33	0.55	0.72	2.59	3.5	0.004	0.57	0.0	0.04	15.80	0.00	2.437	4.76	1.21	3.8	96.2	0.0	1.33	1.56	0.45	0.64	2.25	17598	1112	6	0	6	2	8852	logfile
✘	8JF1	36206	2024-10-14	2023-05-16	2.85	2.80	2.83	3.0	0.015	1.88	0.0	0.08	14.78	0.01	0.001	6.41	0.71	2.6	97.4	0.0	-1.90	0.66	0.83	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16884	2052	8	0	32	8	0	logfile
✔	8SVF	40789	2024-10-13	2023-05-16	3.2	4.13	3.32	3.5	0.003	0.53	0.0	0.03	24.96	0.00	2.220	6.36	1.28	1.6	98.4	0.0	2.82	0.85	0.83	1.74	3.5	0.003	0.58	0.0	0.03	26.24	0.00	2.412	6.93	2.14	2.5	97.5	0.0	2.71	0.64	0.86	0.85	1.33	15254	1189	13	295	0	0	0	logfile
✔	8JEX	36202	2024-10-09	2023-05-16	3.1	3.05	2.75	3.3	0.012	1.13	0.0	0.06	12.57	0.00	2.505	7.63	0.00	3.8	96.2	0.0	-4.98	0.45	0.83	2.64	3.2	0.004	0.56	0.0	0.05	14.06	0.00	2.607	1.37	2.14	3.5	96.5	0.0	-3.09	0.94	0.47	0.87	3.07	2616	330	18	0	60	0	0	logfile
✔	8P2S	17373	2024-10-11	2023-05-16	2.4	2.06	2.43	1.8	0.003	0.54	0.0	0.04	12.82	0.00	2.120	8.76	3.01	4.7	95.2	0.1	0.29	0.79	0.75	4.06	1.8	0.004	0.68	0.0	0.05	16.47	0.00	1.996	10.22	1.65	6.0	93.9	0.1	0.26	0.54	0.80	0.79	3.74	9694	1201	4	0	6	0	0	logfile
✔	8JET	36195	2024-10-15	2023-05-16	3.1	2.32	3.02	3.2	0.002	0.43	0.0	0.04	9.65	0.00	2.269	3.61	1.54	5.4	94.6	0.0	-0.08	0.69	0.80	1.95	3.2	0.003	0.61	0.0	0.04	12.73	0.00	2.482	6.79	1.38	5.8	94.2	0.0	1.42	1.55	0.70	0.81	1.55	19526	2612	4	0	0	0	0	logfile
✔	8JEU	36196	2024-10-15	2023-05-16	3.5	4.02	3.58	3.9	0.002	0.52	0.0	0.04	15.90	0.00	2.202	6.95	0.17	5.0	94.7	0.3	-0.27	0.71	0.81	2.03	3.9	0.002	0.58	0.0	0.04	15.91	0.00	2.525	6.60	1.54	4.8	95.0	0.2	1.00	0.40	0.71	0.81	1.59	19438	2640	4	0	0	0	0	logfile
✔	8P2M	17370	2024-10-09	2023-05-16	3.82	5.95	4.51	4.2	0.012	1.85	111.0	0.14	13.83	0.01	2.190	2.42	1.90	4.5	95.5	0.0	-1.71	0.87	0.76	-0.22	4.2	0.003	0.78	0.0	0.04	15.17	0.00	2.127	12.48	0.87	2.6	97.4	0.0	1.63	1.18	0.87	0.75	0.07	46702	5819	9	0	0	0	0	logfile
✔	8JEJ	36190	2024-10-11	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.34	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.004	1.10	0.0	0.06	17.79	0.01	1.802	6.46	2.14	4.2	95.7	0.1	0.71	0.25	0.69	0.88	4.91	8604	1089	5	0	6	0	0	logfile
✔	8P2D	17361	2024-10-11	2023-05-15	2.59	2.21	2.59	2.0	0.002	0.51	0.0	0.04	12.79	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	1.9	0.004	0.71	0.0	0.05	16.14	0.00	1.945	11.99	2.45	8.5	91.5	0.0	-1.50	1.31	0.73	0.68	1.73	8793	1087	4	0	4	0	0	logfile
✘	8JEC	36185	2024-10-15	2023-05-15	3.1	3.61	3.15	3.5	0.002	0.40	0.0	0.04	9.75	0.00	2.196	4.85	1.03	4.1	95.8	0.1	0.28	0.70	0.82	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19680	2632	4	0	0	0	0	logfile
✔	8P27	17358	2024-10-11	2023-05-15	2.73	2.25	2.73	2.1	0.004	0.55	0.0	0.04	12.49	0.00	1.936	6.22	5.43	8.3	91.7	0.0	-2.06	0.79	0.77	3.73	2.1	0.004	0.68	0.0	0.05	16.57	0.00	1.883	7.02	4.47	7.8	92.2	0.0	-1.30	0.50	0.81	0.79	3.04	8810	1089	4	0	4	0	0	logfile
✔	8SV1	40781	2024-10-10	2023-05-15	3.5	3.48	2.74	3.8	0.003	0.75	0.0	0.05	16.02	0.01	2.219	10.35	0.70	6.2	93.4	0.4	-1.32	0.52	0.70	1.98	3.8	0.003	0.75	0.0	0.05	17.68	0.00	2.431	12.74	3.76	4.8	95.2	0.0	-1.45	0.69	0.47	0.69	1.83	6330	792	6	0	0	0	0	logfile
✔	8JE2	36183	2024-10-12	2023-05-15	3.63	4.61	3.88	3.9	0.004	0.71	1.0	0.05	12.66	0.00	2.215	13.17	0.39	2.8	97.2	0.1	1.29	0.82	0.79	1.08	3.9	0.003	0.67	0.0	0.04	14.34	0.00	2.043	11.93	0.68	3.7	96.2	0.1	1.63	0.96	0.82	0.82	1.27	9271	1147	6	0	1	0	0	logfile
✔	8SV8	40782	2024-10-11	2023-05-15	3.38	3.59	—	3.5	0.004	0.72	0.0	0.04	16.38	0.01	2.199	10.96	0.54	5.5	94.4	0.1	-0.43	0.82	0.85	1.72	3.5	0.003	0.61	0.0	0.04	17.02	0.00	2.384	8.06	2.45	4.5	95.4	0.1	0.36	0.95	0.83	0.87	1.66	10208	1299	5	0	1	0	0	logfile

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