Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W35	43762	2024-10-09	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	8W2H	43748	2024-10-09	2024-02-20	2.6	2.65	2.66	2.7	0.009	1.22	0.0	0.05	14.68	0.01	2.013	3.69	0.53	3.3	96.6	0.1	-0.06	0.64	0.80	4.17	2.7	0.004	0.58	0.0	0.04	17.21	0.00	1.884	4.73	2.45	2.1	97.9	0.0	1.10	1.28	0.59	0.81	3.31	46944	3044	8	0	20	0	23240	logfile
✔	8W20	43736	2024-10-13	2024-02-19	4.3	4.55	4.30	4.4	0.008	1.34	2.0	0.06	6.79	0.01	2.278	1.60	0.45	2.6	97.2	0.3	1.23	0.68	0.69	—	4.5	0.005	0.72	0.0	0.04	8.29	0.00	2.587	3.17	0.00	4.6	95.4	0.0	1.21	1.83	0.70	0.72	—	15412	2814	11	0	0	0	0	logfile
✔	8W22	43737	2024-10-09	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.1	0.004	0.69	0.0	0.04	12.25	0.00	2.610	3.36	3.89	5.2	94.8	0.0	-0.02	0.76	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	8S32	19687	2024-10-11	2024-02-19	2.45	2.64	2.69	2.8	0.004	0.60	0.0	0.04	16.86	0.00	2.225	7.68	1.61	2.6	97.2	0.2	1.91	0.62	0.81	2.58	2.7	0.005	0.63	0.0	0.04	18.25	0.00	2.528	7.61	4.21	2.8	97.0	0.2	1.36	0.59	0.67	0.86	2.59	55552	7518	28	0	0	0	0	logfile
✔	8YC0	39128	2024-10-09	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.004	0.76	0.0	0.04	14.05	0.00	2.455	12.03	0.00	7.4	92.6	0.0	-0.77	1.32	0.61	0.73	—	4635	583	9	0	1	0	0	logfile
✔	8YBQ	39121	2024-10-12	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.57	0.0	0.04	14.21	0.00	2.630	1.67	1.68	2.1	97.9	0.0	1.39	1.26	0.63	0.86	2.41	11700	1506	9	0	3	66	0	logfile
✔	8YBR	39122	2024-10-13	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.63	0.0	0.04	15.05	0.00	2.535	2.55	1.47	5.3	94.7	0.0	-0.10	0.55	0.84	0.85	2.79	15150	1941	3	0	0	0	0	logfile
✔	8YBJ	39119	2024-10-12	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8YBK	39120	2024-10-11	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8W0A	43706	2024-10-11	2024-02-13	3.2	3.72	3.22	3.6	0.003	0.59	0.0	0.04	19.61	0.00	1.561	10.62	0.09	8.1	91.9	0.0	-1.76	0.72	0.71	1.67	3.6	0.003	0.61	0.0	0.04	19.71	0.00	2.387	9.49	4.35	8.4	91.6	0.0	-1.26	0.46	0.71	0.73	1.06	10216	1272	4	14	0	0	0	logfile
✘	8W0i	43710	2024-10-11	2024-02-13	3.5	4.45	3.68	3.8	0.003	0.49	0.0	0.04	9.62	0.00	1.742	4.48	0.03	4.4	95.6	0.0	1.01	0.77	0.80	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56870	3557	12	0	15	0	28489	logfile
✔	8YBE	39117	2024-10-09	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.004	0.67	0.0	0.04	16.69	0.00	2.584	10.50	2.01	2.2	97.8	0.0	1.25	0.34	0.68	0.83	5.59	3110	370	3	0	2	197	0	logfile
✔	8W0E	43707	2024-10-12	2024-02-13	3.4	3.92	3.68	3.8	0.002	0.54	0.0	0.04	14.57	0.00	1.908	6.90	0.63	5.0	95.0	0.0	-0.01	0.77	0.80	1.98	3.8	0.004	0.57	0.0	0.04	16.01	0.00	1.764	5.52	1.54	5.7	94.3	0.0	0.18	0.41	0.77	0.82	1.68	59772	3647	14	50	15	0	29690	logfile
✔	8VZo	43684	2024-10-09	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.005	0.64	0.0	0.05	15.30	0.01	2.597	5.00	1.54	2.6	97.4	0.0	1.92	0.50	0.67	0.89	4.03	4796	615	4	0	1	0	0	logfile
✔	8RZL	19608	2024-10-11	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	1.332	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.67	0.0	0.04	11.42	0.00	2.494	3.51	1.79	2.7	97.3	0.0	1.09	0.48	0.87	0.90	5.29	8895	915	35	0	155	0	0	logfile
✔	8VZN	43683	2024-10-09	2024-02-12	2.77	2.94	2.79	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.004	0.60	0.0	0.04	15.43	0.00	2.616	4.92	1.20	2.0	98.0	0.0	1.67	0.96	0.61	0.87	3.86	4656	596	4	0	1	0	0	logfile
✔	8YB4	39108	2024-10-10	2024-02-11	3.1	3.56	3.21	3.4	0.004	0.62	0.0	0.04	18.65	0.02	2.205	7.05	0.33	4.6	95.4	0.0	0.26	0.68	0.74	1.67	3.4	0.003	0.61	0.0	0.04	18.28	0.00	2.438	4.36	3.31	3.9	96.0	0.1	1.01	0.90	0.69	0.83	1.75	8400	1067	5	0	2	0	0	logfile
✔	8VYM	43667	2024-10-14	2024-02-09	3.4	3.70	3.67	3.7	0.002	0.44	0.0	0.04	11.25	0.00	2.230	6.31	0.66	3.8	96.1	0.0	-0.34	0.75	0.87	2.98	3.7	0.003	0.58	0.0	0.04	13.87	0.00	2.453	6.73	1.99	4.2	95.8	0.0	0.28	1.05	0.74	0.87	2.76	18289	2218	30	0	45	0	0	logfile
✔	8VYF	43659	2024-10-09	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.006	0.67	0.0	0.05	12.54	0.00	2.537	2.75	2.59	3.1	96.9	0.0	0.56	0.53	0.68	0.88	5.21	5132	715	9	0	12	0	0	logfile

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