Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VYG	43660	2024-10-09	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.003	0.65	0.0	0.04	15.84	0.00	2.538	5.77	1.79	2.5	97.5	0.0	0.09	1.48	0.54	0.77	2.67	3204	416	4	0	1	0	0	logfile
✔	8VYF	43659	2024-10-09	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.006	0.67	0.0	0.05	12.54	0.00	2.537	2.75	2.59	3.1	96.9	0.0	0.56	0.53	0.68	0.88	5.21	5132	715	9	0	12	0	0	logfile
✔	8VY9	43650	2024-10-10	2024-02-07	2.88	2.27	2.92	2.0	0.005	0.70	0.0	0.05	14.27	0.00	2.245	3.56	0.00	4.2	95.8	0.0	-0.69	0.78	0.80	3.74	2.1	0.004	0.61	0.0	0.04	16.33	0.00	2.413	6.43	2.21	5.4	94.6	0.0	1.04	0.49	0.79	0.81	3.30	8668	1134	6	0	2	0	0	logfile
✔	8VY7	43647	2024-10-10	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.003	0.60	0.0	0.04	15.73	0.00	2.489	6.57	1.71	3.4	96.6	0.0	1.29	0.97	0.81	0.82	3.31	8811	1136	6	0	2	0	0	logfile
✔	8Y90	39065	2024-10-11	2024-02-06	3.15	3.57	3.32	3.5	0.003	0.57	0.0	0.03	11.77	0.00	2.167	8.97	6.09	2.7	97.3	0.0	-1.83	0.50	0.63	1.25	3.5	0.003	0.67	0.0	0.04	14.92	0.00	2.345	10.47	3.57	3.8	96.2	0.0	0.69	1.18	0.60	0.78	1.46	9058	1130	3	0	3	5	0	logfile
✔	8Y9C	39073	2024-10-12	2024-02-06	3.0	3.24	3.07	3.2	0.003	0.49	0.0	0.04	14.35	0.00	2.211	7.37	0.46	3.7	96.3	0.0	1.00	0.71	0.78	2.73	3.2	0.004	0.63	0.0	0.05	16.33	0.00	2.284	5.83	2.37	3.6	96.4	0.0	0.83	0.66	0.73	0.82	2.95	13400	1674	3	0	1	0	0	logfile
✘	8Y8J	39048	2024-10-09	2024-02-06	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5069	608	10	0	18	0	0	logfile
✔	8Y93	39068	2024-10-11	2024-02-06	3.0	3.45	3.17	3.4	0.003	0.60	0.0	0.04	11.79	0.00	2.127	7.36	5.15	2.2	97.8	0.0	-1.85	0.51	0.68	2.29	3.4	0.003	0.66	0.0	0.04	15.49	0.00	2.300	8.02	2.84	3.2	96.8	0.0	1.18	1.07	0.61	0.82	1.76	9055	1130	3	0	3	0	0	logfile
✘	8Y8B	39040	2024-10-10	2024-02-06	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7303	902	14	0	26	0	0	logfile
✔	8Y86	39035	2024-10-10	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.004	0.55	0.0	0.04	15.81	0.00	2.594	1.81	2.05	2.0	98.0	0.0	2.00	0.19	0.54	0.79	2.40	8060	1028	4	0	2	0	0	logfile
✔	8VXY	43643	2024-10-12	2024-02-06	3.19	3.47	3.32	3.5	0.003	0.81	0.0	0.06	16.14	0.00	2.215	14.40	0.00	4.8	95.2	0.0	-0.15	0.61	0.62	1.03	3.5	0.003	0.67	0.0	0.04	18.47	0.00	2.528	15.19	1.20	4.3	95.7	0.0	-0.71	1.42	0.65	0.67	0.92	12324	1406	5	62	1	0	0	logfile
✔	8Y95	39070	2024-10-11	2024-02-06	3.24	3.62	3.40	3.6	0.003	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.003	0.64	0.0	0.04	15.01	0.00	2.323	10.39	4.01	3.6	96.4	0.0	0.82	1.10	0.56	0.79	2.52	9018	1124	4	0	6	0	0	logfile
✔	8Y8Z	39064	2024-10-11	2024-02-06	3.29	3.66	3.38	3.6	0.007	0.63	0.0	0.04	11.55	0.00	1.761	8.07	6.41	2.6	97.4	0.0	-2.01	0.49	0.64	2.05	3.6	0.004	0.70	0.0	0.04	14.91	0.00	2.243	10.12	3.47	3.5	96.5	0.0	0.63	0.84	0.59	0.78	2.34	9082	1130	6	0	6	4	0	logfile
✔	8Y92	39067	2024-10-11	2024-02-06	3.29	3.68	3.39	3.6	0.003	0.64	1.0	0.04	11.67	0.00	1.954	8.79	4.73	3.1	96.9	0.0	-1.19	0.50	0.67	2.32	3.6	0.003	0.63	0.0	0.04	15.49	0.00	2.313	10.84	3.99	3.8	96.2	0.0	1.16	0.72	0.60	0.79	2.19	9078	1130	6	0	5	5	0	logfile
✔	8Y8K	39050	2024-10-10	2024-02-06	2.89	3.09	2.92	3.2	0.003	0.54	0.0	0.04	16.02	0.01	2.248	3.63	2.28	2.5	97.5	0.0	1.68	0.61	0.80	1.21	3.1	0.004	0.54	0.0	0.04	16.48	0.01	2.612	3.08	2.62	2.5	97.5	0.0	1.91	0.31	0.57	0.79	1.38	8052	1028	2	0	0	0	0	logfile
✔	8Y9B	39072	2024-10-12	2024-02-06	3.2	3.27	3.08	3.3	0.004	0.54	0.0	0.05	13.74	0.00	2.077	5.44	0.00	3.3	96.7	0.0	0.47	0.71	0.82	3.00	3.3	0.002	0.46	0.0	0.04	15.62	0.00	2.135	3.70	0.99	2.7	97.2	0.1	1.40	0.38	0.72	0.85	2.57	13380	1672	3	0	1	0	0	logfile
✔	8Y94	39069	2024-10-11	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.003	0.69	0.0	0.04	15.05	0.00	2.532	11.98	2.42	2.8	97.2	0.0	0.92	1.17	0.59	0.78	1.00	9032	1130	2	0	0	0	0	logfile
✔	8Y91	39066	2024-10-11	2024-02-06	3.13	3.47	3.24	3.4	0.004	0.55	0.0	0.04	11.48	0.00	1.938	9.24	5.04	4.4	95.6	0.0	-1.65	0.48	0.65	1.57	3.4	0.004	0.67	0.0	0.04	15.03	0.00	2.228	7.52	3.78	4.6	95.4	0.0	0.81	1.46	0.65	0.82	2.33	9072	1130	4	0	6	0	0	logfile
✔	8RWK	19549	2024-10-13	2024-02-05	3.8	3.22	3.89	3.7	0.020	1.77	4.0	0.10	13.76	0.01	2.244	5.27	0.00	1.4	98.6	0.0	0.22	0.65	0.71	2.53	3.6	0.004	0.65	0.0	0.05	16.25	0.00	2.361	5.60	2.08	3.0	97.0	0.0	0.77	2.41	0.74	0.78	2.31	15416	1980	8	0	4	0	0	logfile
✔	8Y81	39029	2024-10-11	2024-02-05	2.89	3.13	2.95	3.2	0.007	1.00	0.0	0.06	16.04	0.01	2.274	5.39	0.10	3.8	96.1	0.1	-1.30	0.64	0.78	2.56	3.2	0.004	0.59	0.0	0.04	16.02	0.00	2.462	8.81	1.72	3.9	96.1	0.0	0.50	1.13	0.57	0.77	2.43	8915	1077	13	0	14	0	0	logfile

• ← previous
• Page 21 of 458
• next →