Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8XUU	38684	2024-10-09	2024-01-14	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3598	431	3	0	9	0	0	logfile
✔	8XUo	38679	2024-10-12	2024-01-13	2.84	3.39	2.97	3.3	0.004	0.83	0.0	0.30	20.56	0.00	1.970	8.77	2.71	2.8	97.1	0.1	0.14	0.64	0.71	1.90	3.3	0.004	0.75	0.0	0.04	19.17	0.01	2.392	6.90	3.15	3.9	96.1	0.0	0.09	1.17	0.65	0.74	1.87	12254	1504	4	0	4	0	0	logfile
✔	8VLY	43348	2024-10-10	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.004	0.57	0.0	0.04	15.97	0.00	2.609	6.39	3.75	4.9	95.1	0.0	0.93	0.87	0.65	0.86	1.82	7755	992	5	0	7	0	0	logfile
✔	8RoZ	19408	2024-10-10	2024-01-12	2.7	2.95	2.73	3.0	0.005	0.56	0.0	0.04	17.46	0.00	1.656	5.09	1.06	1.9	98.1	0.0	1.04	0.64	0.85	2.73	3.0	0.003	0.50	0.0	0.04	18.07	0.00	2.594	3.94	3.03	1.5	98.5	0.0	1.62	0.90	0.69	0.87	2.75	6079	751	3	0	0	0	0	logfile
✔	8VLV	43345	2024-10-10	2024-01-12	3.49	3.80	3.51	3.8	0.003	0.56	0.0	0.04	15.45	0.00	2.192	10.08	0.12	5.3	94.7	0.0	0.75	0.63	0.83	2.72	3.8	0.003	0.57	0.0	0.04	15.19	0.00	2.523	7.61	1.75	5.1	94.9	0.0	0.98	0.24	0.69	0.86	1.97	8265	1085	5	0	9	0	0	logfile
✘	8VLU	43344	2024-10-10	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✔	8RNU	19395	2024-10-11	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.78	0.0	0.05	17.94	0.01	2.398	25.78	3.69	10.5	89.5	0.0	-2.30	0.67	0.63	0.33	0.49	10848	1320	12	0	0	0	0	logfile
✘	8XSJ	38620	2024-10-13	2024-01-09	2.61	2.30	2.66	2.1	0.003	0.63	0.0	0.04	13.66	0.01	2.001	6.19	0.10	4.4	95.4	0.2	-0.03	0.75	0.74	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9740	1215	7	0	9	0	0	logfile
✔	8RN8	19390	2024-10-10	2024-01-09	2.92	3.12	2.96	3.1	0.003	0.50	0.0	0.04	17.76	0.00	1.884	6.27	1.95	3.6	96.3	0.1	0.59	0.67	0.81	2.99	3.1	0.004	0.68	1.0	0.04	17.92	0.00	2.066	5.27	1.77	3.9	96.0	0.1	0.39	0.93	0.68	0.83	2.99	51366	3234	9	0	5	0	25704	logfile
✔	8XSi	38619	2024-10-09	2024-01-09	2.1	2.13	2.10	1.9	0.003	0.60	0.0	0.05	12.12	0.00	2.136	4.88	0.55	6.4	93.4	0.2	-0.70	0.80	0.79	4.65	1.9	0.003	0.61	0.0	0.05	14.17	0.00	2.536	3.66	2.20	5.9	93.9	0.2	-0.85	0.89	0.83	0.82	4.68	3354	429	4	0	1	0	0	logfile
✔	8XSE	38617	2024-10-12	2024-01-09	2.5	2.23	2.61	2.0	0.004	0.64	0.0	0.04	17.93	0.01	2.174	6.64	5.41	5.6	94.3	0.1	-0.52	0.79	0.79	3.68	2.0	0.003	0.59	0.0	0.04	17.62	0.00	2.471	4.51	2.54	5.1	94.8	0.1	0.00	0.29	0.82	0.82	3.69	8120	1065	6	0	1	0	0	logfile
✔	8XSF	38618	2024-10-13	2024-01-09	2.16	2.17	2.18	1.8	0.003	0.59	0.0	0.04	12.92	0.01	2.140	6.66	0.19	3.5	96.4	0.1	0.99	0.73	0.69	2.89	1.9	0.004	0.69	1.0	0.05	15.91	0.01	2.010	6.40	2.54	3.3	96.6	0.1	0.51	1.09	0.79	0.77	2.79	9736	1221	6	0	5	0	0	logfile
✘	8VKE	43315	2024-10-10	2024-01-09	3.1	3.35	3.10	3.3	0.003	0.59	0.0	0.04	14.19	0.00	2.103	5.82	0.14	2.6	97.4	0.0	-0.05	0.77	0.85	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6652	854	8	0	2	0	0	logfile
✔	8VKJ	43319	2024-10-10	2024-01-09	2.92	3.19	2.94	3.2	0.005	0.63	0.0	0.04	16.09	0.01	2.201	9.71	0.34	4.5	95.4	0.1	0.61	0.62	0.86	4.03	3.2	0.003	0.56	0.0	0.04	15.58	0.00	2.513	7.72	1.60	4.0	95.9	0.1	0.81	0.84	0.65	0.87	3.39	8622	1089	5	0	9	0	0	logfile
✔	8RNC	19394	2024-10-14	2024-01-09	3.52	3.95	3.79	3.8	0.002	0.51	1.0	0.04	16.41	0.00	1.788	8.46	0.33	4.7	95.2	0.1	0.38	0.72	0.73	1.26	3.8	0.004	0.59	0.0	0.04	17.17	0.00	2.221	8.09	2.09	5.6	94.3	0.1	-0.13	1.03	0.73	0.77	1.44	71539	4477	9	0	0	0	35901	logfile
✔	8XS5	38615	2024-10-10	2024-01-08	3.33	3.40	3.21	3.3	0.011	0.88	0.0	0.05	13.49	0.01	2.081	9.41	0.00	6.7	93.2	0.1	-0.34	0.70	0.85	2.61	3.4	0.003	0.61	0.0	0.04	15.40	0.01	2.531	4.53	0.89	5.0	94.9	0.1	1.46	0.42	0.69	0.84	1.72	8705	1088	2	0	0	0	0	logfile
✔	8XS3	38613	2024-10-09	2024-01-08	3.46	4.59	3.46	3.9	0.005	0.77	0.0	0.05	13.19	0.02	2.090	16.27	0.00	5.0	95.0	0.0	-3.00	0.91	0.83	2.30	3.9	0.003	0.65	0.0	0.04	14.55	0.00	2.488	10.11	1.49	3.5	96.5	0.0	-0.56	1.08	0.91	0.84	2.48	4118	535	5	0	3	0	0	logfile
✔	8XS0	38612	2024-10-11	2024-01-08	3.89	4.15	4.00	4.1	0.004	0.84	0.0	0.05	12.99	0.01	2.158	13.17	0.00	13.6	86.3	0.1	-0.93	0.67	0.80	2.30	4.0	0.003	0.79	0.0	0.04	15.31	0.01	2.429	9.89	2.86	11.1	88.7	0.1	-0.17	0.53	0.67	0.79	1.74	10353	1388	2	0	0	0	0	logfile
✔	8RMN	19365	2024-10-11	2024-01-08	3.8	3.72	3.66	3.7	0.004	0.71	0.0	0.04	13.55	0.01	2.133	13.63	1.16	4.4	95.6	0.0	2.54	0.63	0.77	1.15	3.7	0.004	0.69	0.0	0.04	15.34	0.00	2.095	11.72	3.74	4.6	95.4	0.0	2.25	0.88	0.62	0.74	1.17	55440	7100	40	0	0	0	0	logfile
✔	8RMR	19368	2024-10-14	2024-01-08	3.25	3.58	3.47	3.5	0.002	0.50	0.0	0.04	17.46	0.00	1.921	8.89	0.26	4.2	95.7	0.1	0.21	0.65	0.62	0.85	3.5	0.004	0.73	1.0	0.04	18.11	0.00	1.730	9.25	2.82	5.1	94.9	0.1	-0.46	1.26	0.67	0.70	1.19	68466	4273	8	0	1	0	34252	logfile

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