Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XW1	38727	2024-10-09	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.70	0.0	0.04	14.05	0.00	2.321	11.29	0.00	5.6	94.4	0.0	0.84	1.08	0.57	0.81	—	5082	634	1	0	0	0	0	logfile
✔	8XW0	38725	2024-10-12	2024-01-15	3.11	3.37	2.97	3.4	0.005	0.91	0.0	0.05	19.55	0.01	2.126	10.61	0.83	9.7	90.3	0.0	-0.53	0.60	0.81	2.07	3.4	0.003	0.62	0.0	0.04	17.70	0.00	2.398	7.39	1.41	7.8	92.2	0.0	0.43	1.55	0.65	0.84	1.50	11320	1392	4	0	4	0	0	logfile
✔	8XVE	38702	2024-10-10	2024-01-15	3.0	2.32	3.07	2.1	0.004	0.63	0.0	0.04	16.63	0.01	2.050	7.99	0.65	2.0	98.0	0.0	0.79	0.77	0.78	2.64	2.1	0.004	0.66	0.0	0.04	17.68	0.00	2.446	6.40	4.73	2.6	97.4	0.0	1.06	0.43	0.77	0.79	2.17	8524	1078	6	0	0	0	0	logfile
✔	8XVH	38704	2024-10-10	2024-01-15	3.26	2.34	3.37	2.1	0.002	0.57	0.0	0.04	15.34	0.00	2.140	6.39	0.21	2.3	97.7	0.0	-0.56	0.74	0.73	1.62	2.1	0.003	0.66	0.0	0.04	16.17	0.00	2.493	6.62	3.74	2.6	97.4	0.0	0.54	0.40	0.73	0.73	1.70	8544	1080	6	0	0	0	0	logfile
✔	8XVZ	38724	2024-10-10	2024-01-15	3.78	3.95	3.77	3.8	0.011	1.05	0.0	0.05	13.53	0.01	1.969	17.84	0.00	16.2	83.5	0.3	-2.09	0.67	0.81	2.88	3.8	0.003	0.82	0.0	0.04	15.94	0.01	2.449	10.95	2.55	12.0	87.6	0.3	-0.55	1.16	0.64	0.78	1.67	8690	1223	2	0	0	0	0	logfile
✔	8XVX	38721	2024-10-12	2024-01-15	3.32	3.60	3.32	3.6	0.007	0.76	0.0	0.05	14.52	0.01	2.136	11.14	0.00	10.0	90.0	0.0	-0.50	0.66	0.81	2.26	3.5	0.003	0.62	0.0	0.04	16.47	0.01	2.572	5.97	2.23	7.8	92.2	0.0	0.63	0.36	0.64	0.80	1.27	11110	1392	2	0	0	0	0	logfile
✘	8XUU	38684	2024-10-09	2024-01-14	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3598	431	3	0	9	0	0	logfile
✔	8XV2	38691	2024-10-09	2024-01-14	3.7	2.50	3.71	2.8	0.009	0.99	0.0	0.06	9.84	0.01	2.318	2.55	0.00	5.2	94.8	0.0	-3.54	0.65	0.73	3.48	2.2	0.004	0.72	0.0	0.05	15.18	0.00	2.413	11.15	2.70	3.4	96.6	0.0	1.64	1.25	0.66	0.73	2.59	3128	388	2	0	1	0	0	logfile
✔	8XV9	38693	2024-10-09	2024-01-14	3.8	2.50	3.79	2.0	0.008	0.94	0.0	0.05	12.31	0.01	2.402	2.22	0.00	5.5	94.5	0.0	-3.53	0.58	0.61	1.87	2.9	0.004	0.76	0.0	0.04	16.81	0.00	2.534	11.56	3.00	4.4	95.6	0.0	1.04	1.33	0.60	0.64	1.04	3147	388	2	0	1	0	0	logfile
✔	8XV5	38692	2024-10-09	2024-01-14	3.7	2.43	3.72	2.9	0.005	0.90	0.0	0.05	9.70	0.01	2.280	3.19	0.00	4.4	95.6	0.0	-3.67	0.68	0.71	3.33	2.1	0.011	1.35	1.0	0.05	14.94	0.01	2.444	11.81	3.30	3.1	96.9	0.0	1.11	0.67	0.69	0.72	3.28	3122	388	2	0	1	0	0	logfile
✔	8XVB	38695	2024-10-14	2024-01-14	3.4	4.28	3.41	3.8	0.002	0.49	0.0	0.04	18.53	0.00	2.248	10.17	0.00	4.1	95.9	0.0	1.66	0.56	0.68	1.17	3.9	0.003	0.62	0.0	0.04	18.94	0.00	2.514	10.56	0.79	3.5	96.5	0.0	2.27	1.32	0.61	0.88	1.31	16728	1968	18	48	8	0	0	logfile
✔	8XUo	38679	2024-10-12	2024-01-13	2.84	3.39	2.97	3.3	0.004	0.83	0.0	0.30	20.56	0.00	1.970	8.77	2.71	2.8	97.1	0.1	0.14	0.64	0.71	1.90	3.3	0.004	0.75	0.0	0.04	19.17	0.01	2.392	6.90	3.15	3.9	96.1	0.0	0.09	1.17	0.65	0.74	1.87	12254	1504	4	0	4	0	0	logfile
✔	8RoY	19407	2024-10-10	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile
✔	8VLY	43348	2024-10-10	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.004	0.57	0.0	0.04	15.97	0.00	2.609	6.39	3.75	4.9	95.1	0.0	0.93	0.87	0.65	0.86	1.82	7755	992	5	0	7	0	0	logfile
✔	8RoX	19406	2024-10-10	2024-01-12	3.3	4.29	3.46	4.0	0.008	1.02	0.0	0.07	12.77	0.01	2.316	2.97	1.59	5.1	94.9	0.0	-1.84	0.80	0.76	2.56	4.0	0.002	0.57	0.0	0.04	13.01	0.00	2.603	2.82	3.78	2.8	97.2	0.0	-0.32	0.88	0.82	0.80	2.21	7249	1134	4	0	1	0	0	logfile
✔	8RoZ	19408	2024-10-10	2024-01-12	2.7	2.95	2.73	3.0	0.005	0.56	0.0	0.04	17.46	0.00	1.656	5.09	1.06	1.9	98.1	0.0	1.04	0.64	0.85	2.73	3.0	0.003	0.50	0.0	0.04	18.07	0.00	2.594	3.94	3.03	1.5	98.5	0.0	1.62	0.90	0.69	0.87	2.75	6079	751	3	0	0	0	0	logfile
✔	8VLV	43345	2024-10-10	2024-01-12	3.49	3.80	3.51	3.8	0.003	0.56	0.0	0.04	15.45	0.00	2.192	10.08	0.12	5.3	94.7	0.0	0.75	0.63	0.83	2.72	3.8	0.003	0.57	0.0	0.04	15.19	0.00	2.523	7.61	1.75	5.1	94.9	0.0	0.98	0.24	0.69	0.86	1.97	8265	1085	5	0	9	0	0	logfile
✘	8VLU	43344	2024-10-10	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✔	8RNU	19395	2024-10-11	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.78	0.0	0.05	17.94	0.01	2.398	25.78	3.69	10.5	89.5	0.0	-2.30	0.67	0.63	0.33	0.49	10848	1320	12	0	0	0	0	logfile
✔	8XSF	38618	2024-10-13	2024-01-09	2.16	2.17	2.18	1.8	0.003	0.59	0.0	0.04	12.92	0.01	2.140	6.66	0.19	3.5	96.4	0.1	0.99	0.73	0.69	2.89	1.9	0.004	0.69	1.0	0.05	15.91	0.01	2.010	6.40	2.54	3.3	96.6	0.1	0.51	1.09	0.79	0.77	2.79	9736	1221	6	0	5	0	0	logfile

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