Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V3S	42952	2024-10-09	2023-11-28	3.6	3.74	3.40	3.7	0.011	1.52	0.0	0.09	12.86	0.01	1.385	2.51	0.00	3.9	96.1	0.0	-1.14	0.72	0.75	3.31	3.7	0.003	0.62	0.0	0.04	14.89	0.00	2.070	5.68	2.73	2.4	97.4	0.2	0.43	1.38	0.78	0.81	3.23	3909	501	4	0	5	0	0	logfile
✔	8V3R	42951	2024-10-09	2023-11-28	3.4	3.53	3.28	3.5	0.012	1.58	0.0	0.09	12.46	0.01	1.385	1.56	0.24	2.2	97.8	0.0	-0.46	0.66	0.75	4.33	3.5	0.004	0.63	0.0	0.04	15.35	0.00	1.970	7.54	2.43	2.6	97.4	0.0	0.53	1.38	0.79	0.85	3.82	3953	503	4	0	5	0	0	logfile
✔	8X8Q	38156	2024-10-09	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.002	0.55	0.0	0.04	15.47	0.00	2.622	6.77	0.76	1.1	98.9	0.0	0.63	0.35	0.83	0.86	3.31	4949	622	3	0	1	0	0	logfile
✔	8V45	42965	2024-10-15	2023-11-28	3.63	4.32	3.75	3.9	0.005	0.75	0.0	0.05	12.90	0.01	2.257	4.34	5.65	2.3	97.7	0.0	-1.11	0.84	0.78	1.39	3.9	0.003	0.65	0.0	0.04	14.29	0.00	2.510	8.72	1.88	2.1	97.9	0.0	1.73	1.55	0.85	0.81	1.09	19813	2485	12	0	4	0	0	logfile
✔	8V3L	42949	2024-10-12	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	3.0	0.003	0.65	0.0	0.04	13.22	0.00	2.389	10.54	0.16	3.1	96.7	0.1	1.08	1.58	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8V49	42969	2024-10-12	2023-11-28	3.62	4.40	3.75	3.8	0.003	0.80	0.0	0.05	12.61	0.01	2.306	5.13	3.08	4.8	95.2	0.0	0.10	0.77	0.77	1.50	3.9	0.004	0.68	0.0	0.04	14.91	0.00	2.447	13.34	1.72	3.5	96.5	0.0	1.25	2.99	0.78	0.81	1.42	12834	1586	5	0	1	0	0	logfile
✔	8V3Q	42950	2024-10-09	2023-11-28	3.1	3.32	2.96	3.3	0.009	1.22	0.0	0.07	14.29	0.01	1.370	1.78	0.00	2.8	97.2	0.0	-1.29	0.66	0.76	4.11	3.3	0.003	0.58	0.0	0.04	15.28	0.00	1.885	4.21	1.64	1.4	98.6	0.0	0.83	0.53	0.77	0.85	3.46	4030	503	4	0	9	0	0	logfile
✔	8X82	38133	2024-10-12	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.42	0.0	0.03	17.26	0.00	2.635	3.77	1.99	1.6	98.4	0.0	3.67	0.39	0.59	0.80	2.45	12004	1520	4	0	0	0	0	logfile
✔	8X8o	38151	2024-10-14	2023-11-27	2.5	2.87	2.48	2.7	0.005	0.55	0.0	0.05	14.74	0.00	2.200	2.38	1.64	5.6	94.4	0.0	-1.15	0.82	0.93	5.71	2.7	0.004	0.55	0.0	0.05	14.79	0.00	2.482	1.58	1.53	6.0	94.0	0.0	-0.99	0.18	0.82	0.94	5.65	17682	2325	3	0	0	0	0	logfile
✔	8X8L	38148	2024-10-14	2023-11-27	2.7	2.58	2.91	2.9	0.004	0.60	1.0	0.05	9.65	0.00	2.091	5.91	1.89	2.6	97.4	0.0	2.09	0.57	0.76	3.42	2.8	0.003	0.57	0.0	0.04	15.75	0.00	2.222	5.40	1.58	3.9	96.1	0.0	1.47	1.15	0.59	0.84	3.78	17555	1140	6	0	0	0	8704	logfile
✔	8X8M	38149	2024-10-14	2023-11-27	2.37	2.78	2.36	2.7	0.002	0.49	0.0	0.04	14.22	0.00	2.178	2.38	1.48	4.1	95.9	0.0	-0.91	0.77	0.90	5.32	2.7	0.003	0.53	0.0	0.05	14.39	0.00	2.475	1.78	1.74	5.0	95.0	0.0	-0.88	0.21	0.83	0.93	5.52	17682	2325	3	0	0	0	0	logfile
✘	8X8N	38150	2024-10-14	2023-11-27	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17358	1133	7	0	2	0	8589	logfile
✔	8X85	38136	2024-10-13	2023-11-27	3.58	2.69	3.57	2.2	0.004	0.78	0.0	0.05	13.70	0.01	2.110	12.72	0.18	6.6	93.1	0.3	-1.14	0.70	0.69	1.67	2.1	0.004	0.81	0.0	0.05	14.86	0.00	2.439	11.75	2.47	6.5	93.3	0.3	-0.97	0.51	0.68	0.66	1.62	14490	1782	8	0	17	0	0	logfile
✔	8V2Z	42938	2024-10-13	2023-11-25	2.72	3.50	2.78	3.2	0.005	0.78	0.0	0.05	15.42	0.01	2.186	3.79	0.51	3.1	96.9	0.0	-1.04	0.75	0.88	3.25	3.2	0.002	0.59	0.0	0.04	14.83	0.00	2.120	3.58	1.21	2.9	97.1	0.0	1.91	1.54	0.75	0.88	2.55	14635	1860	10	0	10	0	0	logfile
✔	8V30	42939	2024-10-13	2023-11-25	2.54	3.42	2.59	3.1	0.008	0.94	10.0	0.05	14.97	0.01	1.900	3.02	0.51	3.3	96.7	0.0	-1.20	0.74	0.87	3.73	3.0	0.003	0.63	0.0	0.05	14.16	0.00	1.987	4.10	0.57	3.6	96.4	0.0	1.62	0.28	0.75	0.89	3.54	14910	1890	20	0	15	0	0	logfile
✔	8X7o	38105	2024-10-09	2023-11-24	3.5	3.62	3.02	3.7	0.019	1.48	0.0	0.08	11.60	0.01	2.280	17.38	0.00	9.4	90.6	0.0	-4.07	0.33	0.58	5.29	3.6	0.003	0.64	0.0	0.05	14.97	0.00	2.602	9.13	5.79	6.4	93.6	0.0	-3.64	1.99	0.47	0.87	3.35	3996	550	18	0	12	0	0	logfile
✔	8R7H	18973	2024-10-13	2023-11-24	3.29	3.67	3.28	3.5	0.004	0.50	0.0	0.04	9.96	0.01	2.262	6.08	0.86	2.1	97.9	0.0	-1.80	0.90	0.85	2.72	3.2	0.003	0.59	0.0	0.04	13.04	0.00	2.485	5.73	1.59	3.0	97.0	0.0	1.12	0.57	0.91	0.89	2.69	14258	1850	4	0	0	0	0	logfile
✔	8X7J	38100	2024-10-13	2023-11-24	3.39	4.10	3.41	2.9	0.003	0.52	0.0	0.03	25.85	0.00	1.882	10.74	1.73	2.1	97.9	0.0	2.58	0.90	0.81	2.21	2.9	0.003	0.61	0.0	0.03	26.60	0.00	2.048	10.41	1.24	2.7	97.3	0.0	2.13	1.25	0.91	0.84	1.43	13739	1018	14	288	2	0	0	logfile
✔	8X7i	38099	2024-10-13	2023-11-24	3.27	3.99	3.29	3.0	0.006	0.60	0.0	0.04	25.49	0.00	2.093	11.61	1.85	3.9	96.0	0.1	1.53	0.93	0.87	2.22	3.0	0.003	0.64	0.0	0.04	26.42	0.00	2.101	10.46	2.08	2.8	97.2	0.0	1.77	0.59	0.93	0.88	1.20	14300	1061	14	294	2	0	0	logfile
✔	8X7Q	38107	2024-10-09	2023-11-24	2.7	2.32	2.42	3.3	0.014	1.60	0.0	0.08	14.72	0.01	2.275	17.91	0.00	9.4	90.6	0.0	-4.07	0.18	0.24	0.92	3.0	0.005	0.79	0.0	0.05	17.61	0.00	2.605	9.89	9.74	6.8	93.2	0.0	-3.50	2.15	0.48	0.86	2.75	3936	550	14	0	4	0	0	logfile

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