Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X1C	37990	2024-10-11	2023-11-06	3.2	3.25	3.24	3.2	0.005	0.89	2.0	0.08	18.43	0.01	1.051	10.94	5.29	4.4	95.2	0.4	-2.42	0.67	0.54	0.97	3.2	0.004	0.72	1.0	0.04	19.64	0.00	2.298	10.30	2.37	5.7	94.2	0.1	0.00	1.62	0.80	0.83	1.34	56519	6347	35	294	10	0	0	logfile
✔	8UWC	42661	2024-10-10	2023-11-06	2.27	2.89	2.21	2.7	0.008	0.88	0.0	0.05	15.70	0.01	1.906	13.81	1.67	5.4	94.6	0.0	-1.61	0.72	0.69	2.89	2.7	0.004	0.67	0.0	0.05	16.25	0.00	2.358	8.21	1.67	4.5	95.5	0.0	-0.34	0.82	0.70	0.72	2.79	7767	494	2	0	1	97	3821	logfile
✔	8X15	37984	2024-10-11	2023-11-06	3.2	3.28	3.28	3.0	0.004	0.69	0.0	0.05	17.10	0.01	1.169	13.08	4.96	4.6	95.2	0.2	-2.12	0.60	0.44	0.83	3.1	0.010	0.90	0.0	0.05	19.30	0.01	2.236	13.35	2.60	6.5	93.4	0.1	-0.58	1.02	0.77	0.83	1.28	55488	6279	33	274	8	0	0	logfile
✔	8X19	37988	2024-10-11	2023-11-06	3.2	3.02	3.29	3.2	0.005	0.83	0.0	0.05	20.52	0.01	1.500	20.98	7.61	6.6	92.9	0.5	-2.03	0.59	0.48	1.30	3.1	0.004	0.71	0.0	0.04	20.69	0.00	1.819	10.49	3.26	5.6	94.2	0.2	-0.18	2.13	0.73	0.80	1.24	56704	6372	34	294	11	0	0	logfile
✔	8R2H	18842	2024-10-12	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	1.6	0.005	0.62	0.0	0.05	14.01	0.00	1.901	10.55	1.81	2.4	97.6	0.0	-0.04	0.38	0.75	0.73	3.05	11484	1394	4	0	4	0	0	logfile
✘	8UW3	42637	2024-10-12	2023-11-06	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12005	1265	4	73	1	0	0	logfile
✔	8UW1	42636	2024-10-14	2023-11-05	2.88	3.37	2.99	3.1	0.008	0.73	0.0	0.05	27.27	0.00	2.273	3.06	0.00	2.4	97.6	0.0	0.97	0.83	0.82	2.55	3.1	0.004	0.58	0.0	0.03	27.85	0.00	2.514	4.25	1.71	2.5	97.5	0.0	2.23	0.58	0.85	0.89	2.97	12164	783	11	292	0	0	0	logfile
✔	8UVU	42629	2024-10-12	2023-11-04	3.0	3.23	2.99	3.2	0.003	0.60	0.0	0.04	14.70	0.00	2.246	8.69	0.00	4.3	95.7	0.0	1.70	0.68	0.83	2.96	3.2	0.003	0.65	0.0	0.04	16.38	0.00	2.449	8.77	2.80	5.1	94.9	0.0	2.21	0.25	0.64	0.82	3.00	11976	1516	8	0	8	0	0	logfile
✔	8UVT	42628	2024-10-12	2023-11-04	2.9	3.16	2.88	3.1	0.003	0.47	0.0	0.04	15.28	0.00	2.233	8.27	0.00	3.7	96.3	0.0	2.31	0.67	0.83	2.02	3.1	0.003	0.56	0.0	0.04	17.10	0.00	2.582	8.83	2.00	3.8	96.2	0.0	3.18	0.38	0.67	0.84	1.85	12104	1544	4	0	0	0	0	logfile
✔	8R2D	18839	2024-10-14	2023-11-03	3.9	4.17	3.98	4.2	0.004	0.70	0.0	0.04	15.08	0.00	1.943	14.71	0.00	7.0	93.0	0.0	-3.71	0.73	0.77	1.16	4.2	0.004	0.71	0.0	0.04	16.63	0.00	2.133	11.30	2.07	5.1	94.9	0.0	-0.65	1.42	0.73	0.77	0.88	18276	2342	5	0	2	0	0	logfile
✔	8UUX	42600	2024-10-12	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.004	0.92	1.0	0.05	16.31	0.01	2.106	2.82	3.47	5.8	94.1	0.1	-1.15	0.22	0.42	0.85	3.54	12084	1532	9	0	3	310	0	logfile
✔	8WZX	37963	2024-10-10	2023-11-02	2.88	2.79	2.64	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.005	1.08	1.0	0.05	15.38	0.01	2.433	10.28	2.00	3.2	96.7	0.1	-4.33	0.43	0.55	0.89	5.60	7300	1020	20	0	0	0	0	logfile
✔	8X01	37964	2024-10-13	2023-11-02	3.01	3.35	—	3.3	0.005	0.75	1.0	0.05	15.84	0.01	2.259	11.44	0.49	1.8	98.2	0.0	1.10	0.71	0.84	2.54	3.3	0.003	0.76	0.0	0.04	16.50	0.00	2.466	10.54	2.44	2.0	98.0	0.0	1.20	0.68	0.68	0.84	2.63	12742	1608	6	0	2	0	0	logfile
✔	8R22	18833	2024-10-13	2023-11-02	3.9	3.57	3.81	3.6	0.004	0.67	0.0	0.04	14.65	0.01	2.098	10.00	0.00	9.3	90.7	0.0	-4.23	0.79	0.79	1.68	3.7	0.003	0.63	0.0	0.04	16.25	0.00	2.144	6.43	2.23	5.1	94.9	0.0	-0.64	0.51	0.78	0.78	1.09	15069	1950	5	0	1	0	0	logfile
✔	8UV3	42604	2024-10-12	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.003	0.70	0.0	0.05	16.03	0.01	1.922	2.99	1.97	5.4	94.6	0.0	-1.62	0.36	0.37	0.77	3.22	12069	1534	9	0	3	276	0	logfile
✔	8R23	18834	2024-10-12	2023-11-02	3.2	3.07	3.25	3.2	0.004	0.66	0.0	0.04	14.39	0.01	1.978	6.96	0.00	6.6	93.4	0.0	-5.33	0.80	0.83	2.57	3.2	0.003	0.60	0.0	0.04	16.24	0.00	2.071	5.05	1.58	4.4	95.6	0.0	-0.32	0.42	0.80	0.84	1.20	11979	1548	4	0	2	0	0	logfile
✔	8UUZ	42602	2024-10-09	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.004	0.93	0.0	0.05	16.67	0.00	2.504	33.61	3.48	6.6	93.4	0.0	-1.96	1.36	0.75	0.56	0.90	2258	300	2	0	0	0	0	logfile
✔	8R1J	18818	2024-10-14	2023-11-02	3.2	3.58	—	3.5	0.003	0.54	1.0	0.04	14.46	0.00	1.901	8.01	0.00	7.1	92.7	0.2	-1.29	0.72	0.79	2.68	3.6	0.003	0.54	1.0	0.04	15.70	0.00	2.131	6.23	0.53	6.8	93.0	0.2	-0.63	0.34	0.72	0.81	2.57	67775	4237	7	0	0	0	33874	logfile
✔	8R1F	18809	2024-10-14	2023-11-01	3.67	3.92	3.69	3.9	0.008	0.98	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	3.9	0.003	0.58	0.0	0.04	15.02	0.00	2.163	5.17	1.49	2.9	97.1	0.0	1.19	2.08	0.70	0.68	1.26	16629	1025	5	0	3	0	8263	logfile
✔	8WZK	37955	2024-10-14	2023-11-01	2.4	2.26	2.50	2.4	0.016	1.80	0.0	0.08	14.60	0.01	2.379	2.54	1.87	3.8	96.0	0.2	-1.19	0.51	0.67	5.64	2.4	0.003	0.70	0.0	0.05	15.97	0.01	2.543	5.54	1.99	2.8	97.2	0.0	0.39	1.18	0.71	0.81	4.30	16368	1988	8	0	8	0	0	logfile

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