Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WZB	37949	2024-10-14	2023-11-01	3.28	2.56	—	3.1	0.005	1.12	0.0	0.05	17.82	0.01	2.290	5.87	0.74	4.2	95.7	0.0	-2.34	0.79	0.76	1.83	3.0	0.006	0.80	0.0	0.05	18.01	0.01	2.464	14.02	4.49	4.8	95.1	0.0	-0.90	0.55	0.82	0.81	2.37	17594	2181	11	0	0	0	0	logfile
✔	8UUK	42588	2024-10-11	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.003	0.59	0.0	0.04	16.00	0.00	2.561	9.51	2.10	5.1	94.7	0.2	1.47	0.37	0.58	0.83	3.14	10242	1226	4	0	30	0	0	logfile
✔	8R1F	18809	2024-10-14	2023-11-01	3.67	3.92	3.69	3.9	0.008	0.98	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	3.9	0.003	0.58	0.0	0.04	15.02	0.00	2.163	5.17	1.49	2.9	97.1	0.0	1.19	2.08	0.70	0.68	1.26	16629	1025	5	0	3	0	8263	logfile
✔	8WZH	37952	2024-10-14	2023-11-01	3.7	3.32	3.68	3.6	0.013	1.38	0.0	0.07	15.63	0.00	2.311	6.48	0.93	4.8	95.2	0.0	-2.69	0.64	0.73	3.54	3.6	0.003	0.58	0.0	0.04	16.89	0.00	2.394	5.14	2.34	3.7	96.3	0.0	0.48	1.14	0.77	0.83	3.04	16368	1988	8	0	8	0	0	logfile
✔	8WYi	37929	2024-10-09	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.003	0.84	0.0	0.04	19.03	0.00	2.361	10.47	6.88	11.0	88.1	0.9	-0.27	1.22	0.61	0.76	0.82	4659	589	8	0	0	0	0	logfile
✔	8WYX	37940	2024-10-10	2023-10-31	3.5	3.89	3.49	3.4	0.005	0.57	0.0	0.04	13.61	0.00	2.029	10.00	0.20	3.2	96.8	0.0	-0.06	0.75	0.62	0.72	3.5	0.005	0.80	1.0	0.05	16.40	0.00	2.001	15.80	3.34	4.7	95.3	0.0	-0.63	1.57	0.79	0.69	1.11	8809	1070	2	0	1	0	0	logfile
✔	8UTQ	42546	2024-10-14	2023-10-31	3.1	3.03	3.11	3.4	0.005	0.81	0.0	0.05	18.60	0.01	1.891	3.87	0.22	4.1	95.8	0.1	0.10	0.67	0.86	3.21	3.4	0.004	0.65	0.0	0.04	16.26	0.00	1.843	5.47	1.77	4.1	95.9	0.0	0.91	0.94	0.66	0.88	2.96	16825	2110	12	2	8	0	0	logfile
✔	8UTU	42550	2024-10-12	2023-10-31	3.0	2.25	2.97	2.2	0.006	0.97	1.0	0.05	18.78	0.01	1.969	5.30	1.50	3.7	96.1	0.2	-0.42	0.57	0.83	3.42	2.2	0.003	0.61	0.0	0.04	17.66	0.00	1.977	4.33	2.32	3.5	96.5	0.0	0.89	0.46	0.57	0.83	3.14	13615	1709	9	1	7	0	0	logfile
✔	8UTM	42542	2024-10-13	2023-10-31	4.32	3.34	4.34	2.2	0.009	1.55	9.0	0.09	7.59	0.01	2.603	0.05	0.00	2.7	97.3	0.0	-1.95	0.75	0.74	—	2.2	0.005	0.66	0.0	0.04	4.71	0.00	2.360	1.52	0.00	4.9	95.1	0.0	0.72	1.81	0.79	0.77	—	14176	2856	8	0	0	0	0	logfile
✔	8UTF	42539	2024-10-11	2023-10-31	2.73	2.99	2.86	2.9	0.003	0.45	0.0	0.04	16.15	0.00	2.222	3.02	0.00	1.5	98.5	0.0	0.28	0.69	0.81	3.67	2.9	0.004	0.59	0.0	0.05	15.98	0.00	2.491	3.53	2.24	1.5	98.5	0.0	1.36	1.46	0.77	0.86	2.95	9827	1248	15	0	9	134	0	logfile
✔	8UTV	42551	2024-10-12	2023-10-31	3.0	2.58	3.11	3.2	0.005	0.85	0.0	0.05	17.97	0.01	2.091	4.84	0.70	4.1	95.9	0.1	-0.10	0.59	0.82	3.19	3.3	0.004	0.77	1.0	0.05	17.37	0.00	2.142	8.61	2.09	4.0	96.0	0.0	0.43	1.39	0.60	0.86	2.90	13337	1679	9	1	6	0	0	logfile
✔	8UTW	42552	2024-10-11	2023-10-31	3.4	2.15	3.43	4.0	0.005	0.87	1.0	0.05	19.46	0.01	1.938	6.12	1.89	6.5	93.3	0.2	-0.80	0.51	0.74	1.87	4.0	0.003	0.62	0.0	0.04	17.92	0.01	1.872	5.81	2.92	6.0	93.9	0.1	0.67	0.43	0.51	0.73	1.74	9787	1227	6	1	3	0	0	logfile
✔	8UTR	42547	2024-10-11	2023-10-31	3.3	2.47	3.29	3.4	0.004	0.78	0.0	0.05	18.17	0.01	1.777	3.27	0.66	4.2	95.6	0.2	0.03	0.59	0.84	3.09	3.4	0.003	0.61	0.0	0.04	17.12	0.00	1.960	5.19	1.89	3.5	96.5	0.0	1.02	0.48	0.60	0.85	2.77	9792	1230	7	1	4	0	0	logfile
✔	8WY0	37914	2024-10-09	2023-10-30	3.8	4.17	3.79	4.1	0.003	0.71	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.83	0.0	0.04	17.82	0.00	2.540	11.10	6.76	7.2	92.8	0.0	-0.61	0.64	0.61	0.75	1.38	4656	587	9	0	1	0	0	logfile
✔	8USX	42522	2024-10-14	2023-10-30	4.1	4.33	4.14	4.1	0.003	0.62	0.0	0.04	11.31	0.00	2.167	9.14	0.21	6.8	92.6	0.5	0.07	0.65	0.63	—	4.1	0.004	0.66	0.0	0.05	11.33	0.00	2.373	8.13	0.00	7.1	92.4	0.5	0.05	0.94	0.66	0.64	—	17926	2967	4	0	0	0	0	logfile
✔	8UT6	42531	2024-10-12	2023-10-30	2.8	3.01	2.85	3.0	0.006	0.95	0.0	0.05	13.95	0.01	2.085	2.86	0.00	2.0	98.0	0.0	0.42	0.60	0.79	4.37	3.0	0.005	0.69	0.0	0.05	15.14	0.00	2.407	6.94	1.57	4.1	95.9	0.0	-0.37	1.10	0.61	0.80	4.45	13046	1460	11	0	257	0	0	logfile
✔	8UT9	42534	2024-10-12	2023-10-30	3.3	3.58	3.40	3.6	0.007	1.16	0.0	0.06	14.13	0.01	1.682	5.53	0.00	3.0	97.0	0.0	0.24	0.66	0.77	2.80	3.6	0.005	1.00	0.0	0.05	15.48	0.00	1.947	9.48	2.85	4.0	96.0	0.0	-0.53	0.46	0.68	0.80	2.26	12707	1450	17	0	249	0	0	logfile
✔	8UT7	42532	2024-10-12	2023-10-30	2.7	2.95	2.77	2.9	0.006	1.10	0.0	0.06	12.34	0.01	2.173	2.54	0.00	1.9	98.1	0.0	0.80	0.64	0.84	5.63	2.9	0.005	0.63	0.0	0.04	14.25	0.00	2.430	5.08	1.17	2.8	97.2	0.0	-0.12	0.82	0.68	0.86	4.95	13046	1460	11	0	257	0	0	logfile
✔	8UT8	42533	2024-10-12	2023-10-30	3.2	3.53	3.40	3.5	0.007	1.15	0.0	0.06	13.81	0.01	2.087	3.28	0.00	3.0	97.0	0.0	0.10	0.66	0.76	2.65	3.6	0.004	0.71	0.0	0.04	15.60	0.00	2.438	10.10	2.77	4.6	95.3	0.1	-0.61	0.59	0.68	0.78	2.56	12707	1450	17	0	249	0	0	logfile
✔	8WY5	37916	2024-10-13	2023-10-30	3.12	3.34	3.15	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.003	0.69	0.0	0.05	19.58	0.00	2.363	8.65	1.35	5.7	93.9	0.3	-1.15	1.03	0.65	0.76	1.98	16038	1770	12	76	4	0	0	logfile

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