Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q8W	18263	2024-10-10	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.49	0.0	0.05	15.80	0.00	2.527	0.45	1.08	0.7	99.3	0.0	-0.68	1.98	0.39	0.89	6.48	6618	429	6	0	0	0	3372	logfile
✔	8Q92	18268	2024-10-09	2023-08-19	3.05	2.89	2.63	3.1	0.008	1.37	0.0	0.09	13.95	0.01	2.531	0.94	1.23	8.7	91.3	0.0	-3.17	0.37	0.86	4.77	3.1	0.004	0.73	0.0	0.05	15.65	0.00	2.616	4.21	2.06	5.8	94.2	0.0	-2.76	0.26	0.32	0.83	3.35	2091	282	3	0	0	0	0	logfile
✔	8KGL	37225	2024-10-10	2023-08-19	4.3	4.47	4.30	4.3	0.007	1.06	0.0	0.05	9.44	0.01	2.276	8.04	0.00	7.9	92.1	0.0	-3.21	0.81	0.76	—	4.3	0.002	0.60	0.0	0.04	11.12	0.00	2.474	8.97	0.00	5.1	94.9	0.0	0.24	0.91	0.81	0.75	—	8084	984	2	0	0	0	0	logfile
✔	8KGo	37228	2024-10-12	2023-08-19	3.4	3.44	3.32	3.4	0.011	1.14	0.0	0.07	11.21	0.01	2.219	3.95	0.92	7.2	92.8	0.0	-4.07	0.72	0.85	3.37	3.4	0.002	0.52	0.0	0.04	15.24	0.00	2.545	4.49	1.22	2.8	97.2	0.0	-0.14	0.83	0.72	0.85	1.52	12141	1494	2	0	0	0	0	logfile
✔	8KGK	37224	2024-10-10	2023-08-19	3.16	3.62	3.34	3.6	0.005	0.69	1.0	0.05	13.37	0.01	2.122	11.80	0.40	2.6	97.3	0.1	0.89	0.61	0.75	3.01	3.6	0.004	0.63	0.0	0.04	15.57	0.00	2.399	8.76	3.10	2.7	97.3	0.0	1.05	1.16	0.60	0.77	2.29	7476	1006	5	0	0	0	0	logfile
✔	8KGR	37231	2024-10-13	2023-08-19	3.2	3.30	3.21	3.2	0.008	0.95	0.0	0.06	15.37	0.01	1.983	3.98	0.07	4.6	95.4	0.0	-3.81	0.77	0.86	4.33	3.2	0.003	0.55	0.0	0.04	17.60	0.00	2.003	4.97	2.05	2.9	97.1	0.0	0.30	0.86	0.78	0.87	2.54	13960	1558	6	65	2	0	0	logfile
✔	8Q8Y	18265	2024-10-10	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.002	0.55	0.0	0.05	16.89	0.00	2.483	1.02	1.81	1.6	98.4	0.0	-1.49	1.19	0.35	0.88	5.36	6896	441	6	0	0	0	3521	logfile
✔	8KGW	37234	2024-10-09	2023-08-19	3.4	3.29	3.11	3.3	0.006	0.86	0.0	0.05	13.65	0.01	2.241	4.95	0.00	3.6	96.4	0.0	-0.70	0.51	0.69	2.70	3.3	0.003	0.66	0.0	0.04	15.42	0.00	2.487	6.43	2.58	4.2	95.8	0.0	0.36	0.45	0.55	0.72	2.46	4036	532	2	0	1	0	0	logfile
✔	8Q96	18269	2024-10-09	2023-08-19	3.09	3.01	2.64	3.2	0.009	1.24	0.0	0.07	10.14	0.01	2.529	1.50	0.00	5.6	94.4	0.0	-3.54	0.47	0.86	5.83	3.1	0.009	0.85	0.0	0.05	14.67	0.00	2.579	3.49	3.50	6.5	93.5	0.0	-3.61	1.99	0.46	0.85	4.83	2100	224	12	0	88	0	0	logfile
✔	8KGP	37229	2024-10-12	2023-08-19	3.3	3.40	3.26	3.4	0.011	1.05	0.0	0.07	11.20	0.01	2.314	5.05	0.76	5.9	94.1	0.0	-3.96	0.75	0.88	3.52	3.4	0.003	0.58	0.0	0.04	15.43	0.00	2.491	4.07	2.06	3.5	96.5	0.0	-0.26	1.59	0.75	0.89	2.61	12168	1498	2	0	0	0	0	logfile
✔	8KGV	37233	2024-10-09	2023-08-19	3.2	3.67	3.27	3.6	0.005	0.80	0.0	0.05	13.39	0.01	2.297	10.33	0.23	1.5	98.3	0.2	0.35	0.52	0.76	2.25	3.6	0.003	0.67	0.0	0.04	15.29	0.00	2.560	10.45	2.53	2.7	97.3	0.0	1.68	1.03	0.51	0.76	1.75	4056	533	2	0	1	0	0	logfile
✔	8Q8X	18264	2024-10-09	2023-08-19	2.54	2.40	2.39	2.5	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.5	97.5	0.0	-1.63	0.27	0.77	6.72	2.4	0.004	0.63	0.0	0.05	16.59	0.00	2.631	2.00	1.53	1.8	98.2	0.0	-1.99	0.92	0.37	0.91	6.87	3435	453	6	0	0	0	0	logfile
✔	8Q8Z	18266	2024-10-10	2023-08-19	3.16	3.15	3.34	3.2	0.011	1.88	0.0	0.08	10.80	0.01	2.522	0.00	0.00	4.6	95.4	0.0	-2.15	0.29	0.75	6.08	3.2	0.003	0.53	0.0	0.05	13.93	0.00	2.464	3.27	0.76	1.8	98.2	0.0	-1.87	2.95	0.33	0.85	5.48	7032	450	6	0	0	0	3588	logfile
✔	8KGE	37218	2024-10-09	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.003	0.72	0.0	0.05	16.87	0.00	2.598	8.31	8.29	8.7	91.3	0.0	-2.06	0.38	0.48	0.81	2.59	3584	486	2	0	0	0	0	logfile
✔	8Q88	18249	2024-10-09	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.004	0.73	0.0	0.05	13.95	0.00	2.617	5.52	2.02	1.6	98.4	0.0	-2.34	1.32	0.40	0.87	4.83	3468	456	6	0	0	0	0	logfile
✘	8TVS	41650	2024-10-11	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56913	3697	22	104	443	0	24971	logfile
✔	8Q8E	18252	2024-10-10	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.0	0.006	0.95	0.0	0.06	15.07	0.01	2.382	11.24	4.74	10.5	89.5	0.0	-3.41	1.88	0.36	0.80	3.35	6810	894	12	0	0	0	0	logfile
✘	8TVW	41653	2024-10-12	2023-08-18	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61455	3748	21	56	9	0	30492	logfile
✔	8TVG	41641	2024-10-10	2023-08-18	3.3	3.38	3.21	3.5	0.013	1.36	0.0	0.08	8.92	0.01	2.402	1.16	0.75	2.7	96.8	0.5	0.61	0.75	0.80	3.91	3.4	0.004	0.63	0.0	0.05	13.23	0.00	2.534	2.45	1.24	4.7	95.3	0.0	0.93	1.18	0.77	0.86	3.38	8310	1131	6	0	6	0	0	logfile
✔	8KGF	37219	2024-10-11	2023-08-18	2.9	3.60	2.93	3.3	0.011	1.47	0.0	0.08	13.54	0.01	1.960	8.69	0.44	5.0	95.0	0.0	-1.55	0.83	0.78	3.93	3.3	0.004	0.57	0.0	0.04	15.18	0.00	2.265	4.30	0.80	2.6	97.4	0.0	0.89	0.95	0.84	0.81	3.02	10872	1261	4	29	2	0	0	logfile

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