Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TP7	41469	2024-10-14	2023-08-04	2.8	3.07	2.89	3.1	0.021	1.80	0.0	0.10	10.25	0.01	1.987	1.53	0.00	1.7	98.3	0.0	0.83	0.76	0.85	4.78	3.1	0.004	0.61	0.0	0.04	14.99	0.00	2.456	4.27	2.58	2.2	97.8	0.0	0.51	1.35	0.70	0.84	3.90	17010	2145	15	0	18	0	0	logfile
✔	8KBY	37087	2024-10-09	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.005	1.28	1.0	0.05	15.82	0.01	2.428	9.74	6.58	18.9	80.9	0.1	-5.16	1.75	0.57	0.62	2.75	5050	830	1	0	0	0	0	logfile
✔	8TP4	41466	2024-10-12	2023-08-04	3.3	3.25	3.26	3.4	0.020	1.77	7.0	0.10	10.27	0.02	2.221	2.95	0.00	2.6	97.4	0.0	0.69	0.79	0.84	3.98	3.3	0.006	0.70	0.0	0.05	14.61	0.00	2.458	5.04	2.19	3.6	96.3	0.1	0.11	0.72	0.80	0.87	2.96	13472	1678	11	0	18	0	0	logfile
✔	8TP3	41465	2024-10-13	2023-08-04	3.6	3.91	3.62	3.9	0.020	1.72	0.0	0.11	10.55	0.01	2.336	0.86	0.07	1.7	98.3	0.0	0.78	0.72	0.73	2.35	3.9	0.003	0.68	0.0	0.04	14.85	0.00	2.501	7.84	2.84	2.4	97.6	0.0	0.33	1.47	0.72	0.73	1.91	13691	1700	14	0	20	0	0	logfile
✔	8TP5	41467	2024-10-14	2023-08-04	2.9	3.29	2.95	3.2	0.021	1.86	1.0	0.11	10.61	0.01	2.336	1.75	0.11	1.8	98.2	0.0	1.07	0.76	0.79	3.53	3.2	0.003	0.65	0.0	0.04	15.22	0.00	2.475	6.25	2.07	2.8	97.2	0.0	0.63	1.24	0.78	0.85	3.48	17508	2205	18	0	18	0	0	logfile
✔	8TPA	41471	2024-10-14	2023-08-04	3.0	3.16	3.09	3.2	0.022	1.81	0.0	0.11	10.43	0.01	2.017	1.47	0.00	1.3	98.7	0.0	1.11	0.73	0.82	4.65	3.2	0.003	0.68	0.0	0.05	15.21	0.00	2.519	7.98	2.56	2.2	97.8	0.0	0.19	1.35	0.73	0.84	3.18	17286	2154	18	0	18	0	0	logfile
✔	8Q3i	18128	2024-10-12	2023-08-04	3.11	3.47	3.15	3.1	0.002	0.55	0.0	0.04	14.02	0.01	2.051	3.32	0.00	1.9	98.1	0.0	0.84	0.87	0.81	3.30	3.1	0.003	0.51	0.0	0.04	15.08	0.00	1.902	2.45	0.28	2.0	98.0	0.0	1.43	1.04	0.90	0.88	2.61	60317	3872	9	0	3	0	30177	logfile
✔	8TPP	41480	2024-10-11	2023-08-04	3.64	3.68	3.65	3.8	0.003	0.53	0.0	0.04	16.55	0.00	2.227	6.28	0.11	2.5	97.5	0.0	2.18	0.76	0.81	1.00	3.8	0.002	0.54	0.0	0.04	17.18	0.00	2.340	4.39	3.46	2.8	97.2	0.0	2.49	0.29	0.77	0.81	1.05	9116	1168	4	0	4	0	0	logfile
✔	8TP9	41470	2024-10-14	2023-08-04	3.1	3.33	3.17	3.4	0.020	1.82	7.0	0.11	10.91	0.01	2.334	2.44	0.00	1.9	98.1	0.0	0.64	0.71	0.76	3.47	3.4	0.004	0.70	0.0	0.04	15.15	0.00	2.542	8.35	2.20	4.1	95.9	0.0	-0.76	1.81	0.71	0.80	3.42	17118	2142	15	0	15	0	0	logfile
✔	8Q3P	18132	2024-10-12	2023-08-04	3.5	3.78	3.31	3.5	0.004	0.83	0.0	0.04	17.67	0.01	2.041	15.37	1.67	2.6	97.4	0.0	0.46	0.80	0.86	1.72	3.5	0.004	0.74	0.0	0.04	17.12	0.00	1.912	10.03	2.95	2.5	97.5	0.0	0.38	0.70	0.83	0.89	1.80	59922	7542	36	0	36	0	0	logfile
✔	8Toi	41453	2024-10-12	2023-08-03	2.64	2.63	2.63	3.0	0.010	1.86	0.0	0.05	24.38	0.01	2.318	2.95	0.00	3.6	96.4	0.0	-1.60	0.80	0.84	2.77	3.0	0.003	1.09	0.0	0.04	19.87	0.00	2.274	5.94	1.03	3.8	96.2	0.0	1.92	0.49	0.80	0.88	3.02	11414	1298	4	0	40	0	0	logfile
✔	8ToK	41454	2024-10-11	2023-08-03	3.84	3.53	3.75	3.8	0.004	0.60	0.0	0.04	17.56	0.01	2.195	4.14	0.00	4.2	95.8	0.0	1.87	0.75	0.81	1.14	3.8	0.003	0.57	0.0	0.04	17.81	0.00	2.240	3.88	2.76	4.9	95.1	0.0	2.05	0.30	0.74	0.82	1.41	9908	1258	4	0	4	0	0	logfile
✔	8KAE	37008	2024-10-10	2023-08-03	3.18	3.46	3.28	3.5	0.013	1.06	0.0	0.06	13.54	0.01	2.147	7.23	0.00	7.2	92.8	0.0	-1.16	0.61	0.81	3.21	3.5	0.003	0.59	0.0	0.04	14.42	0.00	2.523	5.02	1.87	4.3	95.7	0.0	0.88	0.37	0.62	0.82	2.01	8440	1105	6	0	1	0	0	logfile
✔	8KB5	37070	2024-10-12	2023-08-03	2.26133	2.35	2.23	2.3	0.007	0.98	0.0	0.05	28.08	0.01	2.377	0.00	0.00	0.7	99.3	0.0	2.15	0.79	0.85	3.73	2.3	0.005	0.61	0.0	0.04	28.30	0.00	2.530	3.62	2.07	0.8	99.2	0.0	2.76	0.23	0.78	0.85	3.64	11953	758	10	290	0	0	0	logfile
✔	8To9	41440	2024-10-14	2023-08-03	4.03	4.87	4.07	4.2	0.005	0.98	0.0	0.06	14.79	0.01	2.328	5.45	0.00	7.0	93.0	0.0	-2.52	0.79	0.76	—	4.2	0.004	0.67	0.0	0.05	12.86	0.00	2.419	11.00	0.00	8.4	91.6	0.0	-1.33	1.02	0.81	0.83	—	18788	2249	36	0	82	0	0	logfile
✔	8KB4	37069	2024-10-09	2023-08-03	3.1	3.80	3.15	3.6	0.004	0.70	0.0	0.04	19.10	0.00	2.151	19.36	0.00	6.1	93.9	0.0	1.68	0.65	0.85	2.49	3.6	0.002	0.57	0.0	0.04	16.19	0.00	2.545	3.84	0.84	4.5	95.5	0.0	2.14	1.25	0.64	0.84	2.08	3367	402	2	0	4	0	0	logfile
✔	8ToH	41452	2024-10-10	2023-08-03	3.29	2.67	3.33	2.3	0.003	0.58	0.0	0.04	14.46	0.00	2.227	13.99	0.00	7.3	92.7	0.0	-1.67	0.68	0.65	1.41	2.3	0.003	0.64	0.0	0.04	16.72	0.00	2.515	13.70	2.73	7.4	92.6	0.0	-1.06	0.47	0.69	0.66	1.13	7022	860	1	0	0	0	0	logfile
✔	8TNW	41427	2024-10-11	2023-08-02	3.17	3.12	2.81	3.2	0.005	0.80	0.0	0.06	16.69	0.01	2.170	8.67	3.90	4.4	95.6	0.0	0.74	0.58	0.85	2.05	3.2	0.005	0.65	0.0	0.04	16.44	0.00	2.534	6.69	3.67	4.7	95.3	0.0	1.12	0.30	0.57	0.87	2.05	8874	1210	4	0	2	0	0	logfile
✔	8TNJ	41418	2024-10-14	2023-08-02	3.1	2.43	3.07	3.0	0.003	0.51	0.0	0.04	16.22	0.00	2.001	5.67	0.46	5.0	95.0	0.0	-1.19	0.66	0.65	2.82	3.0	0.004	0.60	0.0	0.04	17.02	0.00	2.364	5.22	2.52	6.3	93.7	0.0	-1.45	1.10	0.70	0.71	2.82	15715	1040	5	0	0	0	7642	logfile
✘	8KA8	37006	2024-10-10	2023-08-02	2.96	2.36	3.03	2.2	0.003	0.64	0.0	0.04	13.59	0.00	2.017	5.93	0.15	6.2	93.8	0.0	-0.68	0.79	0.79	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6481	790	5	0	7	0	0	logfile

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