Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JSo	36625	2024-10-11	2023-06-20	3.4	3.73	3.46	3.7	0.003	0.67	0.0	0.04	13.94	0.00	2.220	9.19	0.10	5.1	94.9	0.0	-0.64	0.65	0.80	1.60	3.7	0.003	0.70	0.0	0.04	15.86	0.00	2.529	6.41	2.13	4.8	95.2	0.0	-0.14	0.96	0.64	0.81	1.05	9045	1145	6	0	1	0	0	logfile
✔	8JSX	36629	2024-10-09	2023-06-20	3.16	3.39	3.12	3.4	0.005	0.84	0.0	0.06	15.28	0.01	2.440	3.46	1.00	2.1	97.9	0.0	2.26	0.64	0.87	2.00	3.4	0.003	0.66	0.0	0.04	15.87	0.01	2.448	2.77	2.67	2.4	97.6	0.0	2.47	0.29	0.63	0.87	0.95	2828	378	2	0	1	0	0	logfile
✔	8JSN	36624	2024-10-13	2023-06-20	3.4	3.48	3.33	3.4	0.003	0.58	0.0	0.04	15.44	0.00	2.234	5.28	0.06	5.7	93.9	0.5	0.77	0.78	0.85	2.32	3.4	0.003	0.63	0.0	0.04	16.82	0.00	2.412	5.01	1.48	5.7	93.9	0.5	0.85	0.33	0.80	0.88	2.33	14856	1856	7	10	1	0	0	logfile
✔	8JSW	36628	2024-10-09	2023-06-20	2.84	3.08	2.88	3.1	0.009	0.91	0.0	0.05	14.55	0.01	2.277	4.12	0.67	2.6	97.4	0.0	-0.02	0.67	0.86	2.03	3.1	0.003	0.67	0.0	0.04	15.43	0.01	2.588	3.43	2.33	1.8	98.2	0.0	1.63	0.32	0.62	0.85	2.18	2859	384	2	0	1	0	0	logfile
✔	8JSi	36621	2024-10-12	2023-06-20	2.9	3.18	3.04	3.2	0.004	0.62	0.0	0.04	20.29	0.01	1.846	8.85	0.81	7.7	92.3	0.0	-0.66	0.73	0.86	2.80	3.2	0.003	0.65	0.0	0.05	20.73	0.00	1.921	5.84	2.73	5.2	94.8	0.0	0.50	0.40	0.68	0.85	3.10	13377	1466	12	64	7	0	0	logfile
✔	8T7E	41091	2024-10-13	2023-06-20	3.08	3.40	3.07	3.3	0.005	1.09	0.0	0.06	18.22	0.01	2.288	6.80	0.69	7.6	92.3	0.1	-2.94	0.70	0.63	1.75	3.3	0.004	0.77	0.0	0.04	19.58	0.00	2.525	13.20	2.64	8.5	91.4	0.2	-1.33	0.61	0.75	0.76	2.08	14273	1706	5	36	0	0	0	logfile
✔	8PHW	17677	2024-10-09	2023-06-20	3.6	2.46	3.63	2.1	0.005	0.72	0.0	0.04	12.28	0.01	2.209	10.93	6.20	7.5	92.5	0.0	-3.65	0.72	0.72	2.10	2.1	0.003	0.66	0.0	0.04	14.39	0.00	2.589	7.75	4.82	6.0	94.0	0.0	-0.36	0.68	0.71	0.72	2.02	5359	689	5	0	2	0	0	logfile
✔	8JSM	36623	2024-10-13	2023-06-20	3.3	3.40	3.24	3.3	0.003	0.54	0.0	0.04	15.38	0.00	2.050	5.08	0.06	5.7	94.0	0.3	0.89	0.77	0.86	2.59	3.4	0.004	0.81	1.0	0.05	16.85	0.00	2.294	4.64	1.78	6.2	93.5	0.3	0.99	1.69	0.80	0.90	2.33	14856	1856	7	10	1	0	0	logfile
✔	8JSP	36626	2024-10-10	2023-06-20	3.65	3.82	3.55	3.8	0.006	0.79	0.0	0.05	14.06	0.00	2.204	13.73	0.86	5.9	94.1	0.0	-0.89	0.61	0.71	1.51	3.8	0.004	0.67	0.0	0.04	16.00	0.00	2.368	8.18	2.80	4.2	95.8	0.0	-0.09	1.06	0.63	0.72	1.55	8599	1102	6	0	1	0	0	logfile
✔	8T7A	41089	2024-10-13	2023-06-20	2.8	2.99	2.78	3.0	0.005	0.71	0.0	0.05	13.49	0.01	2.212	7.47	0.66	2.0	98.0	0.0	0.46	0.70	0.83	3.76	3.0	0.004	0.58	0.0	0.04	15.51	0.00	2.518	4.05	3.59	1.8	98.2	0.0	0.68	0.34	0.70	0.85	4.00	15819	2040	15	0	3	0	0	logfile
✔	8JS8	36616	2024-10-10	2023-06-19	2.88	3.06	—	3.1	0.003	0.61	0.0	0.04	16.36	0.00	2.188	7.56	2.28	3.1	96.9	0.0	0.62	0.62	0.84	2.55	3.1	0.003	0.54	0.0	0.04	16.54	0.00	2.425	5.47	3.19	2.8	97.2	0.0	1.06	0.35	0.61	0.84	2.79	8189	1012	4	0	6	0	0	logfile
✔	8T6Y	41084	2024-10-12	2023-06-19	2.88	3.64	2.96	3.4	0.005	0.98	0.0	0.05	18.64	0.01	2.209	4.32	1.13	1.9	98.1	0.0	-1.21	0.81	0.84	2.74	3.3	0.003	0.60	0.0	0.04	18.97	0.00	2.512	6.85	1.43	2.6	97.4	0.0	0.98	0.53	0.81	0.85	2.62	11482	1148	4	109	0	0	0	logfile
✔	8T6X	41083	2024-10-12	2023-06-19	3.08	3.82	3.16	3.4	0.004	0.72	0.0	0.04	19.03	0.01	2.015	3.89	0.26	2.2	97.8	0.0	-0.80	0.85	0.84	2.74	3.5	0.004	0.56	0.0	0.04	19.19	0.00	1.904	6.85	1.47	2.1	97.9	0.0	0.78	1.68	0.85	0.85	2.56	13443	1278	6	139	3	0	0	logfile
✔	8JS9	36617	2024-10-10	2023-06-19	3.01	3.19	—	3.2	0.004	0.55	0.0	0.04	15.24	0.00	2.136	7.19	0.23	3.2	96.8	0.0	0.68	0.62	0.85	3.09	3.2	0.003	0.48	0.0	0.04	15.16	0.00	2.553	5.16	1.59	2.0	98.0	0.0	1.10	0.30	0.58	0.84	2.96	8177	1012	4	0	5	0	0	logfile
✔	8T78	41087	2024-10-11	2023-06-19	3.02	3.65	3.08	3.5	0.007	1.07	0.0	0.06	19.85	0.01	2.181	4.81	0.51	2.5	97.5	0.0	-0.99	0.75	0.84	2.70	3.5	0.003	0.55	0.0	0.04	19.69	0.00	2.494	6.47	2.96	2.8	97.2	0.0	0.93	1.12	0.76	0.85	2.65	9561	863	4	116	0	0	0	logfile
✔	8PHF	17660	2024-10-10	2023-06-19	3.6	3.88	3.58	4.0	0.004	0.65	0.0	0.04	16.42	0.00	2.134	11.77	0.11	4.6	95.4	0.0	0.67	0.67	0.71	1.88	4.0	0.002	0.53	0.0	0.04	17.11	0.00	2.570	7.38	1.52	2.4	97.6	0.0	1.75	0.53	0.65	0.70	1.48	8640	1094	4	0	2	0	0	logfile
✔	8PHE	17659	2024-10-11	2023-06-19	3.1	3.23	3.03	3.3	0.003	0.50	0.0	0.04	14.63	0.00	2.148	8.75	0.00	4.1	95.9	0.0	0.27	0.66	0.83	3.12	3.3	0.003	0.54	0.0	0.04	16.88	0.00	2.600	6.17	1.35	4.1	95.9	0.0	1.54	0.36	0.67	0.86	2.95	8914	1132	6	0	0	38	0	logfile
✔	8T76	41085	2024-10-13	2023-06-19	3.42	4.21	3.53	3.5	0.005	1.02	0.0	0.05	18.99	0.01	2.278	4.93	0.32	2.5	97.5	0.0	-1.23	0.83	0.73	1.19	3.6	0.004	0.64	0.0	0.04	19.41	0.00	2.446	12.73	1.19	3.4	96.6	0.0	0.19	1.38	0.85	0.77	1.22	11049	1088	4	111	0	0	0	logfile
✔	8T6U	41081	2024-10-11	2023-06-18	3.13	3.96	3.17	3.7	0.011	1.49	0.0	0.18	15.19	0.01	2.246	4.28	0.33	2.6	97.2	0.2	-3.15	0.67	0.86	2.94	3.7	0.003	0.61	0.0	0.04	14.57	0.00	2.448	7.15	1.45	2.1	97.9	0.0	2.07	1.20	0.64	0.84	2.72	8638	1032	8	0	16	36	0	logfile
✘	8T6T	41080	2024-10-12	2023-06-18	3.04	3.66	3.12	3.4	0.005	1.34	0.0	0.10	18.87	0.01	2.222	4.86	0.48	2.7	97.3	0.0	-1.61	0.82	0.87	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12306	1168	4	129	0	0	0	logfile

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