The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8JPF | 36478 | 2024-10-09 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.008 | 0.81 | 0.0 | 0.04 | 18.98 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 17.63 | 0.00 | 2.460 | 6.81 | 3.21 | 3.0 | 97.0 | 0.0 | 1.74 | 0.94 | 0.45 | 0.78 | 2.35 | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8PD2 | 17598 | 2024-10-10 | 2023-06-11 | 3.25 | 2.29 | 3.19 | 2.1 | 0.004 | 0.52 | 0.0 | 0.04 | 12.99 | 0.00 | 2.322 | 3.02 | 0.00 | 1.4 | 98.6 | 0.0 | 0.72 | 0.62 | 0.78 | 3.03 | 2.1 | 0.003 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.499 | 4.86 | 2.22 | 1.2 | 98.8 | 0.0 | 2.74 | 0.97 | 0.68 | 0.82 | 2.35 | 8270 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JPD | 36476 | 2024-10-09 | 2023-06-11 | 2.81 | 3.01 | 2.83 | 3.1 | 0.004 | 0.61 | 0.0 | 0.04 | 14.35 | 0.00 | 2.283 | 4.50 | 0.37 | 2.7 | 97.3 | 0.0 | 0.83 | 0.68 | 0.79 | 3.29 | 3.0 | 0.004 | 0.65 | 0.0 | 0.04 | 17.41 | 0.00 | 2.500 | 6.16 | 1.87 | 2.4 | 97.6 | 0.0 | 1.13 | 1.34 | 0.69 | 0.86 | 3.11 | 5198 | 658 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8PD5 | 17601 | 2024-10-10 | 2023-06-11 | 3.4 | 2.30 | 3.32 | 2.1 | 0.003 | 0.53 | 0.0 | 0.04 | 13.12 | 0.00 | 2.148 | 2.18 | 0.00 | 2.2 | 97.8 | 0.0 | 1.83 | 0.61 | 0.77 | 2.43 | 2.1 | 0.003 | 0.51 | 0.0 | 0.04 | 15.85 | 0.00 | 2.597 | 4.06 | 2.28 | 1.7 | 98.3 | 0.0 | 2.40 | 0.97 | 0.68 | 0.81 | 2.22 | 8093 | 1024 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PCZ | 17596 | 2024-10-14 | 2023-06-11 | 3.21 | 2.32 | 3.12 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.91 | 0.00 | 2.216 | 5.81 | 0.23 | 2.3 | 97.7 | 0.0 | 1.86 | 0.70 | 0.75 | 2.92 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 15.79 | 0.00 | 2.475 | 5.60 | 2.16 | 2.0 | 98.0 | 0.0 | 2.43 | 0.53 | 0.79 | 0.81 | 2.40 | 16176 | 2046 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JP7 | 36470 | 2024-10-12 | 2023-06-10 | 3.51 | 3.68 | 3.53 | 3.6 | 0.005 | 0.64 | 0.0 | 0.05 | 17.39 | 0.00 | 1.606 | 5.68 | 0.62 | 4.3 | 95.7 | 0.0 | -0.06 | 0.80 | 0.81 | 2.69 | 3.6 | 0.005 | 0.76 | 0.0 | 0.05 | 17.66 | 0.00 | 2.044 | 9.42 | 2.22 | 4.3 | 95.7 | 0.0 | 0.10 | 1.28 | 0.83 | 0.83 | 2.54 | 13476 | 1674 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 8JP5 | 36468 | 2024-10-12 | 2023-06-10 | 2.59 | 2.78 | 2.63 | 3.1 | 0.003 | 0.58 | 0.0 | 0.05 | 17.36 | 0.00 | 1.524 | 5.03 | 2.35 | 3.4 | 96.6 | 0.0 | -0.20 | 0.73 | 0.77 | 2.58 | 3.0 | 0.003 | 0.66 | 0.0 | 0.05 | 18.12 | 0.00 | 2.079 | 7.16 | 3.32 | 2.7 | 97.3 | 0.0 | 0.18 | 0.52 | 0.74 | 0.80 | 2.75 | 13490 | 1676 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 8JP8 | 36471 | 2024-10-12 | 2023-06-10 | 3.39 | 3.56 | 3.42 | 3.5 | 0.002 | 0.52 | 0.0 | 0.04 | 16.26 | 0.00 | 1.774 | 2.78 | 0.07 | 2.7 | 97.3 | 0.0 | 0.20 | 0.81 | 0.82 | 2.71 | 3.5 | 0.003 | 0.72 | 0.0 | 0.05 | 17.40 | 0.00 | 2.063 | 7.53 | 2.49 | 3.3 | 96.7 | 0.0 | -0.16 | 0.83 | 0.84 | 0.85 | 2.74 | 13500 | 1678 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 8JP9 | 36472 | 2024-10-12 | 2023-06-10 | 3.37 | 3.55 | 3.41 | 3.5 | 0.003 | 0.51 | 0.0 | 0.04 | 16.11 | 0.00 | 1.666 | 2.44 | 0.14 | 2.9 | 97.1 | 0.0 | -0.23 | 0.82 | 0.82 | 2.68 | 3.5 | 0.003 | 0.70 | 0.0 | 0.05 | 17.29 | 0.00 | 2.055 | 7.19 | 2.49 | 3.3 | 96.7 | 0.0 | -0.14 | 1.26 | 0.83 | 0.84 | 2.23 | 13500 | 1678 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 8JP6 | 36469 | 2024-10-12 | 2023-06-10 | 3.29 | 3.43 | 3.30 | 3.3 | 0.003 | 0.59 | 0.0 | 0.05 | 16.63 | 0.00 | 1.720 | 4.45 | 0.14 | 3.8 | 96.2 | 0.0 | 0.12 | 0.82 | 0.85 | 3.09 | 3.4 | 0.004 | 0.73 | 0.0 | 0.05 | 17.74 | 0.00 | 2.051 | 7.04 | 1.73 | 4.4 | 95.6 | 0.0 | -0.05 | 0.61 | 0.83 | 0.87 | 2.95 | 13500 | 1678 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 8PBX | 17587 | 2024-10-09 | 2023-06-09 | 3.3 | 3.77 | 3.44 | 3.7 | 0.005 | 0.59 | 0.0 | 0.04 | 15.13 | 0.00 | 1.897 | 11.63 | 0.26 | 6.5 | 93.4 | 0.0 | -0.66 | 0.70 | 0.75 | 2.64 | 3.7 | 0.005 | 0.59 | 0.0 | 0.04 | 15.61 | 0.00 | 2.297 | 9.30 | 1.31 | 7.3 | 92.6 | 0.1 | -1.10 | 0.31 | 0.67 | 0.74 | 2.46 | 33448 | 2187 | 2 | 0 | 0 | 0 | 16455 | logfile |
✘ | 8T4S | 41039 | 2024-10-15 | 2023-06-09 | 2.6 | 2.55 | — | 1.7 | 0.005 | 0.70 | 0.0 | 0.05 | 23.99 | 0.01 | 1.654 | 12.19 | 3.03 | 4.5 | 95.1 | 0.4 | -0.03 | 0.89 | 0.87 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74894 | 4895 | 42 | 1671 | 100 | 4 | 0 | logfile |
✔ | 8T4J | 41033 | 2024-10-10 | 2023-06-09 | 3.9 | 4.16 | 3.61 | 4.0 | 0.002 | 0.60 | 0.0 | 0.04 | 13.69 | 0.00 | 2.275 | 5.11 | 0.28 | 1.8 | 98.2 | 0.0 | 0.48 | 0.65 | 0.79 | 0.89 | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 15.54 | 0.00 | 2.432 | 6.64 | 3.52 | 1.3 | 98.7 | 0.0 | 1.34 | 0.99 | 0.67 | 0.80 | 0.58 | 7824 | 1107 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8PBB | 17583 | 2024-10-12 | 2023-06-09 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13334 | 1684 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8T4E | 41028 | 2024-10-10 | 2023-06-09 | 3.5 | 3.74 | 3.32 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 16.23 | 0.00 | 2.286 | 5.50 | 0.28 | 2.8 | 97.2 | 0.0 | 1.81 | 0.58 | 0.73 | 0.37 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 16.44 | 0.00 | 2.467 | 4.63 | 3.10 | 2.1 | 97.9 | 0.0 | 3.13 | 0.41 | 0.68 | 0.80 | 0.75 | 7714 | 1089 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8T4G | 41030 | 2024-10-10 | 2023-06-09 | 3.5 | 3.76 | 3.37 | 3.7 | 0.003 | 0.53 | 0.0 | 0.04 | 15.82 | 0.00 | 2.254 | 5.37 | 0.14 | 2.2 | 97.8 | 0.0 | 2.80 | 0.68 | 0.82 | 1.39 | 3.7 | 0.003 | 0.53 | 0.0 | 0.04 | 16.52 | 0.00 | 2.520 | 4.16 | 3.25 | 1.9 | 98.1 | 0.0 | 3.07 | 0.22 | 0.67 | 0.82 | 1.57 | 7721 | 1089 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8T4K | 41034 | 2024-10-12 | 2023-06-09 | 2.6 | 2.78 | 2.58 | 2.8 | 0.007 | 1.10 | 0.0 | 0.07 | 13.19 | 0.01 | 1.281 | 1.04 | 0.62 | 0.9 | 98.9 | 0.2 | 0.97 | 0.68 | 0.84 | 5.26 | 2.8 | 0.004 | 0.62 | 0.0 | 0.05 | 15.16 | 0.00 | 2.543 | 4.94 | 2.27 | 1.4 | 98.6 | 0.0 | 1.16 | 0.38 | 0.71 | 0.86 | 4.74 | 13560 | 1638 | 12 | 0 | 39 | 0 | 0 | logfile |
✔ | 8T4H | 41031 | 2024-10-10 | 2023-06-09 | 3.8 | 3.97 | 3.47 | 3.9 | 0.004 | 0.76 | 0.0 | 0.04 | 15.55 | 0.00 | 2.267 | 5.59 | 0.57 | 2.2 | 97.8 | 0.0 | 1.54 | 0.62 | 0.75 | 0.99 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 16.60 | 0.00 | 2.563 | 5.72 | 4.26 | 2.0 | 98.0 | 0.0 | 2.52 | 0.96 | 0.67 | 0.80 | 0.92 | 7702 | 1088 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PC6 | 17595 | 2024-10-12 | 2023-06-09 | 3.04 | 3.48 | 3.06 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 28.54 | 0.01 | 2.142 | 7.87 | 0.13 | 2.2 | 97.8 | 0.0 | 0.83 | 0.89 | 0.83 | 2.36 | 3.1 | 0.003 | 0.57 | 0.0 | 0.03 | 27.26 | 0.00 | 2.186 | 8.19 | 0.25 | 2.6 | 97.4 | 0.0 | 2.20 | 1.33 | 0.93 | 0.91 | 2.69 | 13493 | 939 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 8PBY | 17588 | 2024-10-09 | 2023-06-09 | 3.7 | 4.03 | 3.80 | 4.0 | 0.003 | 0.56 | 0.0 | 0.04 | 13.88 | 0.00 | 1.886 | 18.49 | 0.05 | 8.4 | 91.4 | 0.2 | -2.20 | 0.65 | 0.59 | 1.00 | 4.0 | 0.005 | 0.67 | 0.0 | 0.04 | 15.56 | 0.01 | 2.209 | 16.25 | 1.25 | 12.2 | 87.6 | 0.2 | -2.55 | 1.60 | 0.68 | 0.63 | 0.93 | 33480 | 2187 | 2 | 0 | 0 | 0 | 16474 | logfile |