Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JL0	36385	2024-10-11	2023-06-02	3.1	2.70	3.09	3.1	0.008	0.73	0.0	0.05	20.61	0.01	2.233	8.69	0.79	8.3	91.3	0.4	-1.51	0.77	0.85	2.48	3.1	0.002	0.54	0.0	0.04	20.44	0.00	2.531	6.90	3.38	6.9	93.1	0.1	-0.51	0.28	0.75	0.85	2.51	9244	1042	5	44	1	0	0	logfile
✔	8JL9	36389	2024-10-12	2023-06-02	2.65	2.16	2.47	2.0	0.005	0.86	1.0	0.05	28.86	0.01	1.865	2.36	0.00	1.9	98.1	0.0	0.24	0.60	0.65	2.76	1.8	0.004	0.59	0.0	0.04	28.22	0.00	2.467	3.58	1.77	1.4	98.6	0.0	2.95	1.16	0.80	0.85	3.52	12314	753	10	310	0	0	0	logfile
✔	8JLQ	36404	2024-10-11	2023-06-02	2.84	3.01	2.88	3.1	0.005	0.78	1.0	0.05	13.14	0.00	2.203	18.53	0.41	4.0	96.0	0.0	-0.45	0.59	0.69	2.82	3.1	0.003	0.70	0.0	0.04	15.95	0.00	2.496	13.51	2.44	4.2	95.8	0.0	0.11	0.51	0.57	0.72	1.97	9033	1140	6	0	1	0	0	logfile
✘	8JL4	36388	2024-10-11	2023-06-02	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9588	1066	8	0	86	0	0	logfile
✔	8JLi	36398	2024-10-11	2023-06-02	3.38	3.66	3.38	3.7	0.008	1.00	1.0	0.06	12.67	0.01	2.021	10.57	0.00	2.9	97.1	0.0	0.78	0.51	0.70	0.97	3.6	0.003	0.60	0.0	0.04	16.24	0.00	2.415	6.97	1.64	2.8	97.2	0.0	1.67	1.17	0.56	0.72	0.96	9248	1172	4	0	2	0	0	logfile
✔	8JLE	36394	2024-10-09	2023-06-02	2.82	2.99	2.87	3.0	0.010	1.21	0.0	0.10	12.34	0.01	2.204	13.50	0.00	5.3	94.5	0.2	-0.99	0.49	0.77	3.45	3.0	0.004	0.60	0.0	0.05	15.56	0.00	2.568	6.18	3.70	4.4	95.6	0.0	-0.22	1.06	0.63	0.86	3.92	4408	528	4	0	5	0	0	logfile
✔	8JL1	36386	2024-10-11	2023-06-02	2.8	3.06	2.79	3.1	0.007	0.61	0.0	0.04	15.09	0.00	2.226	4.15	0.00	2.4	97.6	0.0	1.13	0.68	0.89	4.20	3.1	0.005	0.52	0.0	0.04	15.19	0.00	2.468	4.25	1.20	1.8	98.2	0.0	2.40	0.25	0.63	0.87	3.94	9384	1054	8	0	80	0	0	logfile
✔	8JLC	36392	2024-10-10	2023-06-02	2.88	3.12	2.97	3.2	0.011	1.18	0.0	0.09	13.04	0.01	2.195	10.44	0.00	3.7	96.3	0.0	-0.12	0.48	0.74	2.44	3.2	0.003	0.60	0.0	0.04	15.77	0.00	2.414	6.20	2.28	2.5	97.5	0.0	0.72	1.05	0.56	0.81	2.13	8189	1012	4	0	6	0	0	logfile
✔	8JKV	36376	2024-10-11	2023-06-02	2.87	3.16	2.86	3.2	0.007	0.65	0.0	0.05	15.12	0.00	2.253	5.12	0.00	2.3	97.7	0.0	0.73	0.65	0.85	4.23	3.2	0.005	0.58	0.0	0.04	14.66	0.00	2.612	4.51	1.20	1.6	98.4	0.0	1.62	0.86	0.65	0.86	3.99	9266	1054	8	0	76	0	0	logfile
✔	8JL3	36387	2024-10-11	2023-06-02	2.59	2.77	2.59	2.8	0.006	0.63	0.0	0.04	15.27	0.01	2.231	4.60	0.00	1.3	98.7	0.0	1.16	0.70	0.89	4.64	2.8	0.004	0.57	0.0	0.04	15.75	0.00	2.589	3.54	1.53	1.3	98.7	0.0	2.21	0.24	0.67	0.88	4.11	9408	1054	8	0	82	0	0	logfile
✔	8JLH	36397	2024-10-12	2023-06-02	2.9	3.15	3.12	3.2	0.004	0.63	0.0	0.04	15.50	0.00	2.162	9.38	1.39	3.3	96.7	0.0	0.04	0.52	0.78	2.93	3.2	0.003	0.60	0.0	0.04	15.86	0.00	2.399	7.19	3.00	2.9	97.1	0.0	0.36	0.32	0.60	0.83	2.85	12610	1542	8	0	11	0	0	logfile
✔	8T1L	40971	2024-10-10	2023-06-02	4.83	5.18	4.88	4.8	0.003	0.80	0.0	0.04	12.13	0.00	2.161	9.56	0.00	11.4	88.5	0.1	-3.93	0.79	0.75	—	4.8	0.004	0.79	0.0	0.04	11.92	0.01	2.285	13.91	0.00	15.7	84.3	0.0	-1.73	1.33	0.80	0.79	—	49460	7823	26	0	20	0	0	logfile
✔	8JLK	36400	2024-10-10	2023-06-02	3.22	3.56	3.28	3.6	0.005	0.84	0.0	0.05	14.64	0.01	2.213	11.02	0.95	6.2	93.8	0.0	-0.94	0.61	0.67	0.98	3.5	0.003	0.67	0.0	0.04	16.58	0.00	2.460	6.14	2.21	4.2	95.8	0.0	0.04	1.08	0.67	0.79	1.85	8824	1129	6	0	1	0	0	logfile
✔	8JLG	36396	2024-10-09	2023-06-02	2.87	3.10	2.94	3.1	0.011	1.11	0.0	0.08	13.81	0.01	2.213	8.78	0.00	4.7	95.3	0.0	-1.01	0.54	0.83	4.44	3.1	0.003	0.55	0.0	0.05	15.79	0.00	2.451	5.58	3.07	3.6	96.4	0.0	-0.65	0.92	0.59	0.84	3.86	4426	531	4	0	5	0	0	logfile
✔	8JLR	36405	2024-10-11	2023-06-02	3.0	3.35	3.14	3.3	0.003	0.61	0.0	0.04	14.18	0.00	2.200	15.48	0.21	4.3	95.7	0.0	-0.20	0.64	0.75	2.21	3.3	0.004	0.68	0.0	0.04	16.28	0.00	2.499	11.80	1.85	4.5	95.5	0.0	-0.07	0.49	0.61	0.77	1.79	8934	1130	6	0	1	0	0	logfile
✔	8T1i	40968	2024-10-10	2023-06-02	4.68	7.67	5.02	4.6	0.008	0.63	0.0	0.04	11.37	0.00	1.958	12.22	0.00	12.2	87.7	0.1	-3.42	0.87	0.77	—	4.6	0.008	0.68	1.0	0.04	11.42	0.00	1.880	9.42	0.00	10.7	89.3	0.0	-0.87	0.48	0.89	0.80	—	49568	7857	27	0	20	0	0	logfile
✔	8JKB	36367	2024-10-14	2023-06-01	3.27	4.57	3.29	3.9	0.004	0.67	0.0	0.05	13.37	0.00	2.142	8.50	0.16	4.0	96.0	0.0	-1.95	0.84	0.71	2.10	4.0	0.004	0.88	0.0	0.04	15.55	0.00	2.455	11.12	1.82	4.2	95.8	0.0	-1.57	0.92	0.90	0.85	2.00	17169	2220	15	0	0	0	0	logfile
✔	8T0M	40944	2024-10-09	2023-06-01	2.4	2.53	2.44	2.5	0.003	0.56	0.0	0.04	16.14	0.00	2.184	5.34	1.17	1.4	98.6	0.0	1.20	0.77	0.86	4.07	2.6	0.004	0.59	0.0	0.04	16.87	0.00	2.134	5.99	2.36	1.5	98.5	0.0	1.42	1.10	0.75	0.85	3.95	47538	6102	28	0	0	0	0	logfile
✔	8JKD	36368	2024-10-12	2023-06-01	2.6	2.72	2.55	2.8	0.003	0.63	0.0	0.05	14.09	0.00	2.206	7.36	0.00	6.7	93.3	0.0	-0.71	0.73	0.83	3.91	2.8	0.003	0.68	0.0	0.05	16.95	0.00	2.509	5.88	1.83	6.2	93.8	0.0	-0.72	0.35	0.73	0.85	3.89	10960	1403	3	0	0	0	0	logfile
✔	8T0Q	40945	2024-10-12	2023-06-01	3.06	2.84	3.09	3.3	0.008	1.06	1.0	0.28	18.27	0.01	1.734	38.90	3.74	3.9	95.8	0.3	1.56	0.86	0.86	3.43	3.3	0.005	1.26	2.0	0.10	17.26	0.01	2.071	11.13	3.27	3.3	96.6	0.1	1.31	1.55	0.85	0.86	3.07	12355	1547	8	0	6	0	0	logfile

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