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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8JPF | 36478 | 2023-11-13 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.006 | 1.76 | 0.0 | 0.27 | 15.61 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8PC6 | 17595 | 2023-11-15 | 2023-06-09 | 3.04 | 3.48 | 3.06 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 28.60 | 0.01 | 2.142 | 7.87 | 0.13 | 2.2 | 97.8 | 0.0 | 0.83 | 0.89 | 0.83 | 2.36 | 3.1 | 0.004 | 0.58 | 0.0 | 0.03 | 27.52 | 0.00 | 2.154 | 9.42 | 0.00 | 2.6 | 97.4 | 0.0 | 1.40 | 1.33 | 0.93 | 0.92 | 2.93 | 13493 | 939 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 8PC5 | 17594 | 2023-11-15 | 2023-06-09 | 3.02 | 3.37 | 3.06 | 3.0 | 0.006 | 0.79 | 0.0 | 0.06 | 29.35 | 0.01 | 2.205 | 7.09 | 0.42 | 1.9 | 98.1 | 0.0 | 1.05 | 0.90 | 0.86 | 3.01 | 3.0 | 0.004 | 0.58 | 0.0 | 0.03 | 28.03 | 0.00 | 2.205 | 7.27 | 0.56 | 1.8 | 98.2 | 0.0 | 1.53 | 1.94 | 0.93 | 0.91 | 2.78 | 12836 | 853 | 11 | 294 | 0 | 0 | 0 | logfile |
✔ | 8JoL | 36459 | 2023-11-14 | 2023-06-07 | 3.0 | 3.98 | 2.98 | 3.4 | 0.009 | 1.46 | 0.0 | 0.07 | 17.24 | 0.01 | 2.214 | 35.79 | 16.43 | 12.3 | 86.8 | 0.8 | -4.77 | 0.56 | 0.70 | 0.79 | 3.4 | 0.003 | 0.83 | 0.0 | 0.04 | 16.02 | 0.00 | 1.975 | 9.53 | 1.43 | 3.5 | 96.5 | 0.0 | 0.45 | 2.18 | 0.62 | 0.88 | 1.90 | 8513 | 1087 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 8T2V | 40989 | 2023-11-15 | 2023-06-06 | 3.4 | 4.28 | 3.49 | 3.7 | 0.016 | 1.93 | 1.0 | 0.10 | 17.05 | 0.01 | 1.751 | 11.21 | 5.50 | 9.1 | 90.0 | 1.0 | -1.99 | 0.91 | 0.84 | 2.12 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 16.81 | 0.00 | 1.979 | 10.43 | 0.00 | 6.3 | 93.5 | 0.1 | -0.63 | 1.15 | 0.91 | 0.84 | 2.10 | 13134 | 1664 | 10 | 0 | 34 | 6 | 0 | logfile |
✔ | 8Jo2 | 36453 | 2023-11-21 | 2023-06-06 | 2.74 | 2.96 | 2.83 | 3.0 | 0.011 | 1.06 | 4.0 | 0.06 | 18.48 | 0.00 | 2.068 | 13.99 | 2.22 | 6.7 | 93.3 | 0.0 | -2.09 | 0.67 | 0.77 | 2.16 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 20.00 | 0.00 | 2.171 | 10.12 | 2.67 | 3.5 | 96.5 | 0.0 | 0.52 | 0.81 | 0.70 | 0.84 | 1.83 | 35368 | 4163 | 10 | 130 | 0 | 0 | 0 | logfile |
✔ | 8JNS | 36450 | 2023-11-18 | 2023-06-06 | 4.2 | 5.01 | 4.21 | 3.5 | 0.010 | 1.52 | 0.0 | 0.08 | 17.90 | 0.01 | 1.390 | 39.59 | 17.81 | 12.8 | 86.4 | 0.8 | -4.88 | 0.88 | 0.76 | — | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 13.26 | 0.00 | 1.800 | 16.55 | 0.00 | 5.3 | 94.7 | 0.0 | 0.09 | 1.22 | 0.91 | 0.86 | — | 24168 | 2985 | 15 | 0 | 12 | 0 | 0 | logfile |
✔ | 8Jo0 | 36451 | 2023-11-19 | 2023-06-06 | 3.6 | 4.68 | 3.50 | 3.5 | 0.009 | 1.48 | 1.0 | 0.08 | 20.62 | 0.01 | 1.813 | 62.06 | 27.27 | 13.8 | 84.9 | 1.3 | -4.82 | 0.84 | 0.71 | 0.75 | 3.6 | 0.003 | 0.84 | 0.0 | 0.04 | 16.36 | 0.00 | 1.922 | 13.55 | 0.06 | 4.8 | 95.2 | 0.0 | 0.09 | 3.15 | 0.88 | 0.84 | 1.44 | 27362 | 3382 | 20 | 0 | 14 | 0 | 0 | logfile |
✔ | 8JMT | 36426 | 2023-11-13 | 2023-06-05 | 3.3 | 3.55 | 3.41 | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 14.38 | 0.00 | 2.204 | 8.56 | 0.00 | 3.5 | 96.5 | 0.0 | -0.01 | 0.35 | 0.59 | 1.38 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 16.13 | 0.00 | 2.238 | 11.67 | 0.00 | 4.0 | 96.0 | 0.0 | 1.51 | 1.16 | 0.33 | 0.61 | 0.92 | 1894 | 234 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JMN | 36424 | 2023-11-15 | 2023-06-05 | 2.26 | 2.43 | 2.28 | 2.4 | 0.007 | 0.92 | 0.0 | 0.05 | 18.57 | 0.01 | 1.890 | 5.76 | 3.29 | 2.3 | 97.7 | 0.0 | 1.14 | 0.68 | 0.86 | 4.55 | 2.4 | 0.005 | 0.66 | 0.0 | 0.05 | 18.48 | 0.01 | 1.781 | 6.11 | 3.29 | 1.8 | 98.2 | 0.0 | 0.69 | 0.79 | 0.69 | 0.87 | 4.57 | 10491 | 1251 | 6 | 0 | 11 | 373 | 0 | logfile |
✔ | 8JLZ | 36409 | 2023-11-14 | 2023-06-04 | 3.09 | 2.32 | 3.33 | 2.1 | 0.005 | 0.79 | 0.0 | 0.04 | 13.38 | 0.01 | 2.170 | 6.28 | 0.12 | 3.7 | 96.3 | 0.0 | -0.56 | 0.78 | 0.77 | 2.77 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 15.11 | 0.00 | 2.129 | 6.41 | 0.25 | 2.4 | 97.6 | 0.0 | 0.27 | 0.35 | 0.79 | 0.79 | 2.31 | 7730 | 1015 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8T1F | 40962 | 2023-11-17 | 2023-06-02 | 3.49 | 3.75 | 3.60 | 3.7 | 0.007 | 1.37 | 0.0 | 0.06 | 14.05 | 0.01 | 2.171 | 4.71 | 0.85 | 11.6 | 87.7 | 0.6 | -5.59 | 0.62 | 0.82 | 3.07 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.92 | 0.00 | 2.125 | 10.83 | 0.31 | 9.5 | 90.2 | 0.2 | -1.34 | 1.17 | 0.68 | 0.85 | 2.23 | 20790 | 2542 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8JKB | 36367 | 2023-11-17 | 2023-06-01 | 3.27 | 4.57 | 3.29 | 3.9 | 0.004 | 0.67 | 0.0 | 0.05 | 13.37 | 0.00 | 2.142 | 8.50 | 0.16 | 4.0 | 96.0 | 0.0 | -1.95 | 0.84 | 0.71 | 2.10 | 4.0 | 0.004 | 0.81 | 0.0 | 0.04 | 15.44 | 0.00 | 2.132 | 14.34 | 0.37 | 3.9 | 96.1 | 0.0 | -1.64 | 0.93 | 0.90 | 0.85 | 2.01 | 17169 | 2220 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8T08 | 40938 | 2023-11-14 | 2023-05-31 | 3.0 | 3.26 | 3.12 | 3.3 | 0.003 | 0.47 | 0.0 | 0.04 | 12.80 | 0.00 | 2.014 | 5.35 | 0.07 | 1.8 | 98.2 | 0.0 | 1.10 | 0.74 | 0.79 | 3.01 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.67 | 0.00 | 2.113 | 9.26 | 2.15 | 2.1 | 97.9 | 0.0 | 1.07 | 1.21 | 0.75 | 0.83 | 2.42 | 55104 | 7044 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P7W | 17537 | 2023-11-16 | 2023-05-31 | 3.04 | 3.33 | 3.02 | 3.3 | 0.004 | 0.72 | 0.0 | 0.04 | 15.99 | 0.00 | 2.206 | 9.76 | 0.45 | 6.1 | 93.9 | 0.0 | -1.44 | 0.65 | 0.86 | 2.29 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 16.41 | 0.00 | 2.079 | 9.79 | 0.76 | 5.8 | 94.2 | 0.0 | -0.38 | 0.38 | 0.66 | 0.87 | 2.29 | 14380 | 1852 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P8A | 17543 | 2023-11-15 | 2023-05-31 | 3.2 | 3.30 | 3.14 | 3.3 | 0.006 | 1.01 | 0.0 | 0.06 | 17.72 | 0.01 | 2.213 | 4.01 | 10.55 | 7.2 | 92.7 | 0.1 | -3.83 | 0.61 | 0.84 | 3.07 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.52 | 0.00 | 2.108 | 6.04 | 0.55 | 6.7 | 93.3 | 0.1 | -0.15 | 1.59 | 0.61 | 0.87 | 3.05 | 13337 | 1709 | 9 | 0 | 4 | 0 | 0 | logfile |
✔ | 8JJo | 36361 | 2023-11-13 | 2023-05-31 | 3.4 | 3.75 | 3.53 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 17.03 | 0.00 | 2.184 | 10.68 | 0.31 | 5.7 | 94.3 | 0.0 | -0.11 | 0.40 | 0.71 | 1.06 | 3.8 | 0.003 | 0.54 | 0.0 | 0.04 | 17.92 | 0.00 | 2.198 | 9.53 | 0.62 | 5.1 | 94.6 | 0.3 | 0.97 | 0.38 | 0.36 | 0.72 | 1.41 | 3016 | 375 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8P82 | 17539 | 2023-11-19 | 2023-05-31 | 3.36 | 4.33 | 3.37 | 3.4 | 0.013 | 1.11 | 2.0 | 0.09 | 12.80 | 0.01 | 2.221 | 0.89 | 0.07 | 3.8 | 96.0 | 0.2 | -0.97 | 0.84 | 0.70 | 0.97 | 3.4 | 0.002 | 0.64 | 0.0 | 0.04 | 14.65 | 0.00 | 2.109 | 6.13 | 0.11 | 2.6 | 97.4 | 0.0 | 1.76 | 1.81 | 0.85 | 0.70 | 0.93 | 25156 | 3192 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8P83 | 17540 | 2023-11-21 | 2023-05-31 | 3.87 | 4.82 | 3.91 | 3.8 | 0.003 | 0.66 | 3.0 | 0.06 | 4.70 | 0.00 | 2.470 | 0.84 | 0.00 | 2.0 | 97.9 | 0.1 | 0.35 | 0.81 | 0.58 | — | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 5.70 | 0.01 | 2.230 | 9.10 | 0.00 | 7.0 | 93.0 | 0.0 | -1.97 | 2.83 | 0.85 | 0.58 | — | 35656 | 7036 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P6Y | 17511 | 2023-11-13 | 2023-05-30 | 1.9 | 1.73 | 1.95 | 1.9 | 0.005 | 0.60 | 0.0 | 0.04 | 16.82 | 0.00 | 2.148 | 3.62 | 0.36 | 1.0 | 98.9 | 0.2 | 1.99 | 0.68 | 0.84 | 6.33 | 1.9 | 0.004 | 0.63 | 0.0 | 0.04 | 16.85 | 0.00 | 2.148 | 4.60 | 0.90 | 1.3 | 98.5 | 0.2 | 1.74 | 0.21 | 0.68 | 0.85 | 6.33 | 5266 | 630 | 7 | 0 | 3 | 158 | 0 | logfile |