Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QCP	18331	2023-11-14	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.003	0.58	0.0	0.05	15.97	0.00	2.209	1.86	0.00	3.9	96.1	0.0	-2.06	3.54	0.35	0.85	5.32	7002	453	6	0	0	0	3567	logfile
✔	8QCR	18333	2023-11-13	2023-08-28	2.75	2.70	2.59	2.9	0.011	1.78	0.0	0.08	9.60	0.01	2.505	0.00	0.00	3.0	97.0	0.0	-1.85	0.33	0.79	7.24	2.9	0.002	0.52	0.0	0.05	16.26	0.00	2.227	3.81	0.00	0.0	100.0	0.0	-0.50	2.19	0.39	0.87	7.57	3153	204	3	0	0	0	1608	logfile
✔	8TY1	41710	2023-11-15	2023-08-24	3.46	3.78	3.53	3.7	0.005	0.89	0.0	0.05	17.34	0.01	2.005	22.87	0.68	10.5	89.0	0.5	-2.57	0.70	0.59	0.78	3.7	0.004	0.79	0.0	0.05	17.76	0.00	2.012	21.74	0.55	10.7	88.9	0.4	-2.59	0.44	0.72	0.63	0.77	13508	1675	6	0	12	0	0	logfile
✔	8Q9o	18287	2023-11-14	2023-08-20	3.1	3.14	2.95	3.1	0.012	1.87	0.0	0.09	11.25	0.01	2.518	0.28	3.03	3.0	97.0	0.0	-1.40	0.32	0.80	5.39	3.1	0.003	0.59	0.0	0.05	13.90	0.00	2.051	4.41	0.25	2.7	97.3	0.0	-1.16	3.55	0.32	0.81	5.30	7032	450	6	0	0	0	3588	logfile
✔	8Q9K	18284	2023-11-13	2023-08-20	3.2	3.24	3.02	3.3	0.011	2.00	0.0	0.09	9.09	0.01	2.527	0.79	0.00	5.1	94.9	0.0	-1.94	0.39	0.82	6.44	3.2	0.003	0.57	0.0	0.05	14.49	0.00	2.134	4.92	0.56	3.5	96.5	0.0	-1.36	2.69	0.35	0.84	5.27	6306	408	6	0	0	0	3216	logfile
✔	8Q9G	18280	2023-11-14	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.003	0.58	0.0	0.05	17.24	0.00	2.070	2.20	0.26	1.9	98.1	0.0	-1.97	1.38	0.35	0.84	6.30	6822	438	6	0	0	0	3480	logfile
✔	8Q9M	18286	2023-11-14	2023-08-20	2.65	2.53	2.47	2.7	0.011	1.76	0.0	0.09	11.56	0.01	2.640	0.28	0.00	1.8	98.2	0.0	-1.02	0.33	0.79	6.36	2.6	0.003	0.52	0.0	0.05	17.65	0.00	2.386	1.28	0.51	0.9	99.1	0.0	-1.58	1.45	0.41	0.90	6.12	7032	450	6	0	0	0	3588	logfile
✔	8Q9i	18282	2023-11-13	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	17.83	0.00	2.169	1.76	0.00	0.5	99.5	0.0	-1.49	4.60	0.38	0.87	7.68	3411	219	3	0	0	0	1740	logfile
✔	8Q9F	18279	2023-11-13	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.64	0.0	0.05	15.99	0.00	2.249	3.13	0.00	2.5	97.5	0.0	-2.11	1.84	0.44	0.86	7.01	6390	414	6	0	0	0	3258	logfile
✔	8Q9J	18283	2023-11-14	2023-08-20	2.96	2.81	3.01	2.7	0.011	1.86	0.0	0.09	10.83	0.01	2.532	0.00	0.00	1.2	98.8	0.0	-1.24	0.26	0.75	6.29	2.9	0.003	0.56	0.0	0.05	16.80	0.00	2.220	2.35	0.26	2.6	97.4	0.0	-1.82	1.38	0.31	0.84	5.61	6822	438	6	0	0	0	3480	logfile
✔	8Q9L	18285	2023-11-15	2023-08-20	2.76	2.36	2.64	2.6	0.011	1.76	0.0	0.09	11.63	0.01	2.537	0.00	0.00	1.6	98.4	0.0	-1.68	0.29	0.76	6.43	2.6	0.003	0.58	0.0	0.05	18.20	0.00	2.031	3.42	0.69	0.8	99.2	0.0	-2.01	1.62	0.37	0.86	6.48	10233	657	9	0	0	0	5220	logfile
✔	8Q8D	18251	2023-11-14	2023-08-18	3.04	2.88	2.87	3.0	0.011	1.85	2.0	0.08	13.26	0.01	2.504	0.00	0.00	2.9	97.1	0.0	-1.65	0.32	0.75	5.97	3.0	0.004	0.55	0.0	0.05	16.73	0.00	2.333	1.41	0.76	1.4	98.6	0.0	-1.23	1.65	0.39	0.87	5.95	7074	456	6	0	0	0	3606	logfile
✔	8Q8C	18250	2023-11-14	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.56	0.0	0.05	16.18	0.00	2.145	1.81	0.27	1.4	98.6	0.0	-1.06	1.98	0.39	0.90	7.60	6618	429	6	0	0	0	3372	logfile
✔	8Q88	18249	2023-11-13	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.003	0.70	0.0	0.05	13.61	0.00	2.296	6.79	1.26	2.0	98.0	0.0	-2.37	1.34	0.40	0.87	5.10	3468	456	6	0	0	0	0	logfile
✔	8Q7T	18233	2023-11-15	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	3.0	0.003	0.57	0.0	0.05	16.68	0.00	2.070	5.56	2.29	2.7	97.3	0.0	-1.43	1.53	0.33	0.82	4.46	10083	654	9	0	0	0	5136	logfile
✔	8Q7M	18224	2023-11-13	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.007	0.82	0.0	0.05	15.54	0.00	2.195	6.24	0.68	4.1	95.9	0.0	-2.17	1.06	0.36	0.87	3.98	5109	669	9	0	0	0	0	logfile
✔	8TUP	41628	2023-11-15	2023-08-16	3.3	3.44	3.30	3.4	0.002	0.41	0.0	0.04	14.81	0.00	2.277	4.52	0.00	2.2	97.8	0.0	2.02	0.65	0.78	2.89	3.4	0.003	0.51	0.0	0.04	15.32	0.00	2.198	6.36	0.21	1.3	98.7	0.0	2.69	0.89	0.59	0.80	2.63	12869	1590	12	0	3	66	0	logfile
✔	8Q7L	18219	2023-11-13	2023-08-16	2.82	2.80	2.86	2.9	0.011	1.90	4.0	0.11	11.68	0.01	2.159	2.03	0.00	4.4	95.6	0.0	-2.15	0.34	0.80	5.45	2.9	0.003	0.67	0.0	0.05	17.48	0.00	2.272	4.65	0.78	1.6	98.4	0.0	-2.24	0.89	0.39	0.90	5.38	3375	441	6	0	0	0	0	logfile
✔	8Q7F	18215	2023-11-13	2023-08-16	3.72	2.86	3.58	3.2	0.011	1.88	2.0	0.10	12.87	0.01	2.492	0.00	0.00	1.1	98.9	0.0	-1.74	0.32	0.74	3.87	3.2	0.004	0.68	0.0	0.05	16.37	0.00	2.186	6.64	0.51	1.4	98.6	0.0	-1.39	0.98	0.39	0.80	4.05	3402	450	6	0	0	0	0	logfile
✔	8Q7C	18212	2023-11-18	2023-08-16	2.9	4.06	3.13	3.6	0.004	0.54	0.0	0.04	14.30	0.00	2.140	7.64	3.64	3.1	96.9	0.0	-0.10	0.90	0.90	4.16	3.6	0.002	0.57	0.0	0.04	14.76	0.00	2.160	7.57	4.46	2.8	97.2	0.0	0.05	0.26	0.90	0.90	4.01	21348	2670	3	0	0	0	0	logfile

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