Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CTT	45918	2024-11-18	2024-07-25	2.5	2.88	2.59	2.8	0.003	0.56	0.0	0.04	16.17	0.00	2.059	8.28	1.53	1.7	98.3	0.1	1.23	0.66	0.89	3.72	2.8	0.004	0.54	0.0	0.04	16.56	0.00	2.252	6.83	1.71	1.8	98.2	0.1	1.00	0.23	0.66	0.89	3.65	15595	1880	10	0	5	0	0	logfile
✔	9iWQ	60959	2024-11-14	2024-07-25	2.08	2.25	2.08	2.2	0.022	2.14	21.0	0.22	12.56	0.01	2.493	0.18	0.00	1.0	99.0	0.0	1.04	0.22	0.91	6.38	2.2	0.003	0.45	0.0	0.04	13.94	0.00	2.575	0.70	0.32	0.5	99.5	0.0	3.45	0.96	0.21	0.91	5.06	5683	387	1	0	0	0	2830	logfile
✘	9CTR	45916	2024-11-18	2024-07-25	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15623	1880	10	0	9	0	0	logfile
✘	9CTS	45917	2024-11-18	2024-07-25	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15623	1880	10	0	9	0	0	logfile
✔	9G8B	51127	2024-11-18	2024-07-23	3.5	3.76	3.53	3.7	0.018	1.49	0.0	0.08	8.25	0.01	2.028	3.20	0.00	0.3	99.7	0.0	1.59	0.76	0.83	3.48	3.7	0.003	0.58	0.0	0.05	11.83	0.00	2.437	3.22	3.09	2.7	97.3	0.0	0.89	1.22	0.76	0.86	3.89	17346	2415	7	0	0	0	0	logfile
✔	9iUZ	60916	2024-11-15	2024-07-22	3.19	3.81	3.34	3.7	0.002	0.56	0.0	0.04	18.04	0.00	2.226	7.81	0.55	3.4	96.6	0.0	1.40	0.75	0.73	1.79	3.7	0.003	0.62	0.0	0.04	18.21	0.00	2.456	6.43	2.99	3.4	96.6	0.0	1.20	0.95	0.75	0.83	1.35	8349	1061	5	0	2	0	0	logfile
✔	9iU1	60886	2024-11-16	2024-07-20	4.3	4.47	4.35	4.4	0.003	0.60	0.0	0.04	17.14	0.00	2.241	9.47	0.00	8.5	91.5	0.0	0.02	0.64	0.68	—	4.4	0.003	0.66	0.0	0.04	14.84	0.00	2.426	9.09	0.00	8.3	91.7	0.0	-0.37	0.69	0.65	0.69	—	6603	790	8	0	14	0	0	logfile
✔	9G5K	51088	2024-11-14	2024-07-17	2.87	2.98	2.85	2.9	0.004	0.60	0.0	0.04	15.28	0.00	2.263	5.33	0.70	2.4	97.6	0.0	1.73	0.56	0.78	2.93	2.9	0.004	0.65	0.0	0.04	16.62	0.00	2.497	5.46	3.29	2.6	97.4	0.0	1.98	1.22	0.63	0.84	2.74	4040	507	3	0	1	0	0	logfile
✔	9CoD	45776	2024-11-16	2024-07-16	4.7	4.64	4.82	4.3	0.004	1.08	0.0	0.04	13.74	0.00	2.175	20.80	0.00	24.3	71.8	3.9	-4.85	0.84	0.75	—	4.4	0.003	0.84	0.0	0.05	14.18	0.00	2.534	14.00	0.00	18.4	76.7	4.9	-4.75	1.28	0.83	0.75	—	12405	1575	15	0	0	0	0	logfile
✔	9CMi	45749	2024-11-15	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.002	0.87	0.0	0.04	15.65	0.00	2.305	7.81	1.97	3.6	96.4	0.0	0.08	0.97	0.76	0.78	2.60	7877	1025	7	0	1	2	0	logfile
✔	9CMH	45748	2024-11-14	2024-07-15	4.0	4.53	4.03	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	4.1	0.003	0.78	0.0	0.04	15.85	0.00	2.523	19.55	4.09	4.5	95.5	0.0	-0.93	1.42	0.62	0.68	—	3553	466	2	0	0	0	0	logfile
✔	9CLP	45728	2024-11-14	2024-07-12	3.43	3.82	3.39	3.8	0.002	0.52	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.002	0.53	0.0	0.04	14.04	0.00	2.303	4.93	1.28	2.5	97.5	0.0	0.34	0.68	0.65	0.78	2.06	5035	650	5	0	11	0	0	logfile
✔	9G2U	50984	2024-11-14	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.51	0.0	0.03	16.06	0.00	2.565	6.99	1.80	0.4	99.6	0.0	6.36	4.28	0.71	0.83	0.58	3634	456	2	0	0	0	0	logfile
✔	9G2W	50986	2024-11-14	2024-07-11	3.6	4.37	3.63	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.60	0.0	0.03	16.55	0.00	2.514	6.23	1.46	0.8	99.2	0.0	6.06	0.73	0.68	0.83	0.91	3838	478	2	0	0	0	0	logfile
✔	9CKV	45655	2024-11-17	2024-07-09	3.19	3.71	3.28	3.6	0.005	0.66	0.0	0.05	16.35	0.00	1.734	1.63	0.00	4.8	95.2	0.0	-0.12	0.67	0.71	3.86	3.6	0.003	0.53	0.0	0.04	14.92	0.00	1.924	2.08	0.28	4.8	95.2	0.0	-0.30	0.52	0.71	0.77	3.41	13268	872	11	0	26	0	6375	logfile
✔	9CK3	45639	2024-11-14	2024-07-08	2.04	2.11	1.97	2.0	0.004	0.64	0.0	0.05	19.96	0.00	2.532	3.88	2.08	1.5	98.5	0.0	-0.15	0.59	0.90	8.74	2.0	0.004	0.60	0.0	0.06	18.90	0.00	2.640	2.79	4.51	3.9	96.1	0.0	-0.48	0.33	0.59	0.90	8.67	5748	840	12	0	0	0	0	logfile
✔	9CK8	45644	2024-11-16	2024-07-08	3.04	3.30	3.16	3.3	0.005	0.89	0.0	0.06	12.90	0.01	2.121	3.38	0.00	4.0	96.0	0.0	-0.52	0.68	0.84	4.82	3.3	0.003	0.59	0.0	0.04	13.31	0.00	2.451	4.34	2.22	2.4	97.6	0.0	0.10	0.82	0.64	0.84	4.22	9966	1001	30	0	283	0	0	logfile
✔	9iNY	60712	2024-11-15	2024-07-08	3.6	3.79	3.23	4.0	0.003	0.75	4.0	0.05	12.39	0.00	1.909	10.87	0.71	7.2	92.0	0.7	-1.95	0.66	0.82	2.41	4.0	0.005	0.65	0.0	0.05	14.23	0.00	2.462	8.80	2.23	8.8	90.3	0.9	-2.67	1.37	0.67	0.84	2.27	8793	1125	3	0	0	0	0	logfile
✔	9CK7	45643	2024-11-16	2024-07-08	3.45	3.77	3.60	3.8	0.005	0.96	0.0	0.06	13.79	0.02	2.103	4.85	0.11	4.6	95.4	0.0	-1.41	0.64	0.78	3.38	3.7	0.004	0.75	0.0	0.04	14.54	0.00	2.392	9.23	3.85	5.1	94.9	0.0	-0.93	0.88	0.67	0.81	3.04	10026	1001	32	0	292	0	0	logfile
✔	9CJ7	45624	2024-11-16	2024-07-05	3.0	3.67	3.21	3.4	0.006	0.95	0.0	0.06	16.20	0.01	2.107	2.90	0.00	4.2	95.8	0.0	-0.13	0.85	0.86	4.17	3.4	0.003	0.69	0.0	0.04	13.72	0.00	2.421	5.54	1.65	2.8	97.2	0.0	0.68	1.18	0.82	0.83	3.24	11501	1300	38	0	89	0	0	logfile

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