Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SoA	25264	2021-12-01	2021-10-29	3.1	3.33	3.14	3.3	0.010	1.26	0.0	0.08	10.28	0.01	2.194	1.06	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.003	0.57	0.0	0.04	13.31	0.00	2.244	3.85	0.73	2.4	97.6	0.0	1.06	0.56	0.69	0.90	4.79	3850	477	5	0	6	0	0	logfile
✔	7SoF	25269	2021-12-01	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.28	1.0	0.07	8.50	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.003	0.64	0.0	0.04	13.13	0.00	2.164	5.33	0.88	2.7	97.3	0.0	0.17	1.37	0.70	0.82	3.60	3735	488	5	0	9	0	0	logfile
✘	7SoD	25267	2021-12-01	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.22	0.0	0.07	9.29	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3830	473	5	0	7	0	0	logfile
✘	7SoC	25266	2021-12-01	2021-10-29	3.3	3.48	3.25	3.5	0.010	1.21	0.0	0.07	10.55	0.00	2.526	0.74	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3448	433	5	0	7	0	0	logfile
✔	7SK1	25169	2021-12-01	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.003	0.63	0.0	0.04	15.96	0.01	2.301	7.30	0.43	4.2	95.8	0.0	0.11	0.58	0.60	0.75	0.71	4291	524	4	0	7	0	0	logfile
✔	7SK0	25168	2021-12-01	2021-10-19	3.33	3.63	2.74	3.6	0.009	1.04	0.0	0.06	14.22	0.01	2.005	3.11	0.44	4.3	95.7	0.0	0.35	0.47	0.66	1.21	3.6	0.004	0.76	0.0	0.04	15.88	0.00	2.177	14.34	0.00	2.2	97.8	0.0	1.88	0.59	0.50	0.70	1.92	4168	514	4	0	7	0	0	logfile
✔	7SHN	25131	2021-12-01	2021-10-09	3.1	3.32	—	3.3	0.017	1.34	6.0	0.08	16.25	0.01	2.330	8.30	0.20	3.5	96.5	0.0	-6.40	0.65	0.84	2.48	3.3	0.005	0.74	0.0	0.04	16.74	0.01	2.236	9.49	0.41	3.5	96.5	0.0	0.03	0.63	0.63	0.84	1.59	9677	1171	4	0	44	0	0	logfile
✔	7SHM	25130	2021-12-01	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.18	0.01	2.322	4.88	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.64	0.0	0.04	16.62	0.00	2.170	9.00	0.21	4.0	96.0	0.0	0.26	0.62	0.64	0.84	2.42	9186	1142	4	0	2	0	0	logfile
✔	7SDE	23517	2021-12-01	2021-09-29	3.2	3.37	—	3.3	0.004	0.92	1.0	0.06	17.03	0.00	2.201	25.84	8.60	10.6	89.1	0.3	-4.65	0.74	0.77	2.50	3.3	0.004	0.73	0.0	0.04	16.95	0.01	2.199	9.88	0.33	6.9	93.1	0.0	-0.30	0.57	0.74	0.79	2.15	5734	726	2	0	0	0	0	logfile
✔	7S9D	24933	2021-12-02	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.63	0.0	0.04	11.85	0.00	2.181	11.11	0.00	8.7	91.0	0.3	-0.37	0.46	0.60	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	7S9E	24934	2021-12-02	2021-09-20	3.7	3.21	—	3.6	0.004	0.72	0.0	0.05	13.53	0.00	2.202	11.48	0.00	7.1	92.9	0.0	-0.36	0.60	0.81	2.60	3.6	0.003	0.60	0.0	0.04	15.33	0.00	2.232	9.97	0.00	6.1	93.9	0.0	0.80	0.47	0.62	0.81	2.49	10476	1354	4	0	2	0	0	logfile
✔	7S9A	24930	2021-12-02	2021-09-20	3.8	3.50	—	3.6	0.003	0.60	0.0	0.04	12.68	0.01	2.290	6.24	0.00	6.6	93.1	0.3	1.38	0.62	0.82	2.00	3.6	0.004	0.66	0.0	0.04	14.15	0.01	2.280	6.62	0.09	6.2	93.5	0.3	1.24	0.32	0.62	0.83	1.45	10420	1350	4	0	2	0	0	logfile
✔	7S8X	24928	2021-12-02	2021-09-20	3.3	3.00	—	3.3	0.005	0.73	0.0	0.05	14.05	0.00	2.237	11.81	0.00	6.6	93.3	0.1	0.01	0.64	0.82	2.58	3.3	0.006	0.68	0.0	0.04	15.58	0.01	2.168	10.15	0.35	6.1	93.7	0.1	1.09	1.16	0.66	0.84	2.41	10426	1350	2	0	0	0	0	logfile
✔	7S9B	24931	2021-12-02	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.002	0.67	0.0	0.04	11.96	0.00	2.251	11.22	0.00	6.7	93.3	0.0	0.44	0.44	0.60	0.79	—	10458	1356	2	0	0	0	0	logfile
✔	7S8L	24896	2021-12-01	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.55	0.01	2.252	3.20	1.34	3.5	96.5	0.0	1.25	0.35	0.84	0.84	3.95	8177	1096	6	0	0	0	0	logfile
✘	7S8N	24898	2021-12-01	2021-09-18	2.9	2.20	2.92	2.1	0.013	0.95	0.0	0.06	13.12	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8154	1090	6	0	1	0	0	logfile
✔	7S8P	24900	2021-12-01	2021-09-18	2.6	2.11	2.62	1.8	0.024	0.85	0.0	0.18	12.77	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.004	0.80	0.0	0.12	14.88	0.01	2.152	4.45	1.24	4.6	95.4	0.0	-0.76	0.29	0.83	0.83	4.19	8093	1089	5	0	1	0	0	logfile
✔	7S8o	24899	2021-12-01	2021-09-18	2.58	2.12	2.59	1.9	0.008	0.79	0.0	0.05	13.16	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.008	0.99	0.0	0.04	15.83	0.00	2.222	3.55	1.61	4.2	95.8	0.0	0.97	0.38	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7S8M	24897	2021-12-01	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.45	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.56	0.0	0.04	15.00	0.00	2.213	6.39	1.95	4.2	95.8	0.0	1.25	0.33	0.80	0.82	3.88	8346	1102	6	0	0	0	0	logfile
✔	7PQE	13591	2021-12-02	2021-09-17	3.7	3.72	—	3.6	0.006	0.68	0.0	0.04	13.13	0.00	2.107	12.28	0.09	5.6	94.4	0.0	-1.09	0.81	0.82	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10746	1365	5	0	2	0	0	logfile

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