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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8F68 | 28877 | 2022-12-18 | 2022-11-16 | 3.15 | 3.85 | 3.18 | 3.7 | 0.012 | 1.51 | 0.0 | 0.07 | 13.68 | 0.00 | 1.244 | 6.33 | 0.00 | 1.9 | 98.1 | 0.0 | 0.75 | 0.78 | 0.83 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9666 | 1198 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 8F6C | 28879 | 2022-12-18 | 2022-11-16 | 3.46 | 4.16 | 3.57 | 3.9 | 0.013 | 1.69 | 0.0 | 0.07 | 13.84 | 0.00 | 1.241 | 4.99 | 0.90 | 2.5 | 97.5 | 0.0 | 0.10 | 0.74 | 0.75 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19344 | 2396 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 8F0A | 28754 | 2022-12-14 | 2022-11-02 | 2.6 | 3.77 | 2.61 | 3.4 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.56 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.68 | 0.66 | 4.15 | 3.4 | 0.003 | 0.69 | 0.0 | 0.05 | 14.10 | 0.00 | 2.180 | 8.01 | 0.53 | 1.1 | 98.9 | 0.0 | 1.37 | 1.43 | 0.72 | 0.77 | 3.72 | 18060 | 1212 | 9 | 0 | 0 | 0 | 9189 | logfile |
✔ | 8EYX | 28723 | 2022-12-14 | 2022-10-29 | 4.5 | 4.99 | 4.61 | 4.1 | 0.006 | 0.76 | 1.0 | 0.05 | 12.87 | 0.00 | 1.857 | 34.13 | 1.18 | 9.7 | 89.7 | 0.6 | -1.73 | 0.86 | 0.74 | — | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 12.76 | 0.00 | 2.148 | 16.17 | 0.06 | 6.9 | 92.9 | 0.2 | -1.16 | 1.18 | 0.89 | 0.81 | — | 14298 | 1773 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EYY | 28724 | 2022-12-14 | 2022-10-29 | 4.9 | 6.21 | 5.32 | 4.3 | 0.003 | 0.58 | 0.0 | 0.04 | 12.98 | 0.00 | 2.165 | 21.23 | 0.06 | 7.2 | 92.6 | 0.2 | -1.16 | 0.89 | 0.81 | — | 4.3 | 0.002 | 0.57 | 0.0 | 0.04 | 13.20 | 0.00 | 2.190 | 18.77 | 0.00 | 6.8 | 93.2 | 0.1 | -1.00 | 1.12 | 0.90 | 0.84 | — | 14301 | 1773 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EZ0 | 28725 | 2022-12-14 | 2022-10-29 | 3.7 | 4.09 | 3.78 | 3.9 | 0.004 | 0.63 | 0.0 | 0.04 | 15.91 | 0.00 | 2.130 | 13.83 | 0.12 | 7.3 | 92.7 | 0.0 | -1.65 | 0.85 | 0.82 | 2.02 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 16.44 | 0.00 | 2.165 | 13.59 | 0.42 | 7.0 | 93.0 | 0.0 | -1.45 | 1.16 | 0.84 | 0.82 | 1.94 | 14640 | 1815 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EYR | 28693 | 2022-12-13 | 2022-10-28 | 4.0 | 4.25 | 4.10 | 4.0 | 0.005 | 0.75 | 0.0 | 0.05 | 17.46 | 0.01 | 2.099 | 23.70 | 0.27 | 11.5 | 88.3 | 0.2 | -2.62 | 0.86 | 0.82 | — | 4.0 | 0.003 | 0.66 | 0.0 | 0.05 | 17.58 | 0.00 | 2.210 | 17.65 | 0.33 | 9.2 | 90.6 | 0.2 | -2.06 | 0.44 | 0.86 | 0.82 | — | 13635 | 1705 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EW3 | 28641 | 2022-12-12 | 2022-10-21 | 2.65159 | 3.20 | 2.63 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 10.09 | 0.00 | 2.260 | 3.12 | 0.16 | 1.7 | 98.3 | 0.0 | 1.12 | 0.78 | 0.90 | 4.36 | 3.0 | 0.004 | 0.57 | 0.0 | 0.04 | 13.47 | 0.00 | 1.068 | 6.12 | 0.96 | 2.4 | 97.6 | 0.0 | 1.33 | 1.18 | 0.75 | 0.90 | 3.48 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 8EVU | 28637 | 2022-12-12 | 2022-10-20 | 2.5804 | 3.19 | 2.52 | 2.9 | 0.003 | 0.44 | 0.0 | 0.04 | 10.09 | 0.00 | 2.279 | 2.75 | 0.08 | 1.3 | 98.7 | 0.0 | 1.17 | 0.78 | 0.92 | 4.78 | 2.9 | 0.004 | 0.54 | 0.0 | 0.04 | 13.46 | 0.00 | 1.105 | 4.75 | 0.56 | 2.4 | 97.6 | 0.0 | 1.43 | 0.42 | 0.76 | 0.91 | 3.98 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 8EUP | 24410 | 2022-12-15 | 2022-10-19 | 3.1 | 3.34 | — | 3.2 | 0.004 | 0.56 | 0.0 | 0.04 | 17.14 | 0.00 | 2.108 | 12.27 | 0.40 | 5.3 | 94.6 | 0.1 | -0.11 | 0.72 | 0.69 | 1.81 | 3.2 | 0.002 | 0.53 | 0.0 | 0.03 | 16.88 | 0.00 | 2.001 | 12.74 | 0.40 | 4.0 | 95.9 | 0.1 | 0.63 | 0.40 | 0.74 | 0.72 | 1.55 | 78722 | 6156 | 41 | 1623 | 1 | 0 | 0 | logfile |
✔ | 8ETG | 24397 | 2022-12-17 | 2022-10-17 | 3.4 | 3.34 | — | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 16.64 | 0.00 | 2.066 | 12.64 | 0.58 | 4.8 | 95.1 | 0.1 | -0.31 | 0.60 | 0.53 | 0.47 | 3.2 | 0.006 | 0.77 | 0.0 | 0.04 | 17.26 | 0.01 | 1.974 | 17.34 | 0.77 | 5.1 | 94.8 | 0.1 | -0.24 | 1.02 | 0.69 | 0.68 | 1.34 | 99257 | 7394 | 49 | 2226 | 1 | 0 | 0 | logfile |
✔ | 8ETH | 24409 | 2022-12-15 | 2022-10-17 | 3.8 | 2.97 | — | 2.9 | 0.006 | 0.62 | 0.0 | 0.04 | 16.49 | 0.01 | 2.088 | 10.21 | 0.53 | 5.2 | 94.6 | 0.2 | -0.47 | 0.63 | 0.61 | 2.70 | 2.9 | 0.004 | 0.59 | 0.0 | 0.04 | 16.56 | 0.00 | 2.062 | 10.80 | 0.44 | 4.3 | 95.5 | 0.2 | 0.26 | 1.11 | 0.63 | 0.60 | 2.46 | 77577 | 6161 | 42 | 1508 | 1 | 0 | 0 | logfile |
✔ | 8ETJ | 24396 | 2022-12-15 | 2022-10-17 | 3.2 | 3.29 | — | 3.1 | 0.004 | 0.61 | 0.0 | 0.04 | 17.20 | 0.00 | 2.061 | 12.51 | 0.81 | 4.9 | 94.9 | 0.2 | -0.83 | 0.80 | 0.81 | 2.29 | 3.1 | 0.004 | 0.63 | 0.0 | 0.04 | 17.16 | 0.00 | 2.087 | 13.81 | 0.62 | 4.7 | 95.2 | 0.1 | -0.12 | 1.17 | 0.82 | 0.84 | 2.11 | 79857 | 4979 | 36 | 1961 | 1 | 0 | 0 | logfile |
✔ | 8ETi | 24395 | 2022-12-16 | 2022-10-17 | 3.7 | 3.18 | — | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 16.99 | 0.01 | 2.074 | 11.62 | 0.78 | 5.4 | 94.6 | 0.1 | -3.47 | 0.51 | 0.44 | 0.44 | 3.1 | 0.006 | 0.74 | 0.0 | 0.04 | 17.31 | 0.00 | 1.993 | 13.31 | 0.47 | 5.5 | 94.5 | 0.0 | -0.50 | 1.74 | 0.63 | 0.65 | 1.77 | 90456 | 7639 | 46 | 1812 | 1 | 0 | 0 | logfile |
✔ | 8ETC | 24398 | 2022-12-17 | 2022-10-16 | 3.1 | 3.22 | — | 3.1 | 0.002 | 0.53 | 0.0 | 0.03 | 16.07 | 0.00 | 2.067 | 10.50 | 0.70 | 3.9 | 95.9 | 0.2 | -0.30 | 0.65 | 0.60 | 0.73 | 3.1 | 0.006 | 0.75 | 0.0 | 0.04 | 17.10 | 0.01 | 1.938 | 16.59 | 0.68 | 5.4 | 94.5 | 0.1 | -0.49 | 0.97 | 0.72 | 0.72 | 1.82 | 95651 | 6128 | 43 | 2287 | 1 | 0 | 0 | logfile |
✔ | 8BC0 | 15958 | 2022-12-12 | 2022-10-14 | 3.09 | 3.54 | 2.95 | 3.5 | 0.004 | 0.59 | 0.0 | 0.04 | 13.16 | 0.01 | 2.052 | 17.33 | 7.06 | 5.0 | 95.0 | 0.0 | 0.18 | 0.54 | 0.60 | 1.08 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 15.54 | 0.01 | 2.079 | 21.25 | 0.34 | 4.9 | 95.1 | 0.0 | -0.06 | 0.85 | 0.54 | 0.60 | 0.89 | 10861 | 1316 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8BC1 | 15959 | 2022-12-12 | 2022-10-14 | 2.93 | 3.48 | 2.73 | 3.5 | 0.002 | 0.46 | 0.0 | 0.04 | 10.38 | 0.00 | 2.265 | 7.96 | 3.43 | 2.9 | 97.1 | 0.0 | 1.53 | 0.38 | 0.52 | 1.52 | 3.5 | 0.004 | 0.80 | 0.0 | 0.05 | 15.62 | 0.01 | 2.021 | 15.81 | 1.50 | 3.8 | 96.2 | 0.0 | 0.65 | 1.05 | 0.39 | 0.54 | 1.25 | 8684 | 1054 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ESC | 28575 | 2022-12-21 | 2022-10-13 | 3.1 | 3.13 | 3.05 | 3.2 | 0.002 | 0.51 | 0.0 | 0.04 | 13.90 | 0.00 | 2.156 | 7.03 | 0.02 | 5.0 | 95.0 | 0.0 | -0.12 | 0.79 | 0.79 | 2.12 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 15.88 | 0.00 | 1.996 | 8.91 | 0.19 | 5.1 | 94.9 | 0.0 | 0.48 | 0.52 | 0.83 | 0.83 | 1.91 | 43279 | 5300 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8ERQ | 28558 | 2022-12-11 | 2022-10-12 | 3.3 | 3.48 | 3.22 | 3.5 | 0.010 | 1.32 | 0.0 | 0.07 | 10.07 | 0.01 | 2.265 | 2.12 | 0.95 | 3.8 | 96.2 | 0.0 | 0.38 | 0.63 | 0.76 | 4.07 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 14.01 | 0.00 | 2.286 | 4.41 | 0.63 | 4.3 | 95.7 | 0.0 | -0.33 | 0.99 | 0.65 | 0.84 | 3.73 | 3178 | 423 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8ERR | 28559 | 2022-12-15 | 2022-10-12 | 3.1 | 3.29 | 3.06 | 3.3 | 0.010 | 1.32 | 2.0 | 0.08 | 10.01 | 0.01 | 2.346 | 2.40 | 0.88 | 3.0 | 96.7 | 0.3 | 0.26 | 0.73 | 0.78 | 4.14 | 3.3 | 0.003 | 0.61 | 0.0 | 0.05 | 12.66 | 0.00 | 2.174 | 3.48 | 0.10 | 3.2 | 96.8 | 0.0 | 0.59 | 1.52 | 0.72 | 0.75 | 3.88 | 25780 | 3742 | 13 | 0 | 50 | 0 | 0 | logfile |