Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8F6C	28879	2022-12-18	2022-11-16	3.46	4.16	3.57	3.9	0.013	1.69	0.0	0.07	13.84	0.00	1.241	4.99	0.90	2.5	97.5	0.0	0.10	0.74	0.75	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19344	2396	12	0	12	0	0	logfile
✘	8F68	28877	2022-12-18	2022-11-16	3.15	3.85	3.18	3.7	0.012	1.51	0.0	0.07	13.68	0.00	1.244	6.33	0.00	1.9	98.1	0.0	0.75	0.78	0.83	2.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9666	1198	6	0	6	0	0	logfile
✔	8F0A	28754	2022-12-14	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	3.4	0.003	0.69	0.0	0.05	14.10	0.00	2.180	8.01	0.53	1.1	98.9	0.0	1.37	1.43	0.72	0.77	3.72	18060	1212	9	0	0	0	9189	logfile
✔	8EZ0	28725	2022-12-14	2022-10-29	3.7	4.09	3.78	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.83	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.003	0.59	0.0	0.04	16.44	0.00	2.165	13.59	0.42	7.0	93.0	0.0	-1.45	1.16	0.84	0.82	1.94	14640	1815	6	0	0	0	0	logfile
✔	8EYX	28723	2022-12-14	2022-10-29	4.5	4.99	4.61	4.1	0.006	0.76	1.0	0.05	12.87	0.00	1.857	34.13	1.18	9.7	89.7	0.6	-1.73	0.86	0.74	—	4.1	0.002	0.61	0.0	0.04	12.76	0.00	2.148	16.17	0.06	6.9	92.9	0.2	-1.16	1.18	0.89	0.81	—	14298	1773	6	0	0	0	0	logfile
✔	8EYY	28724	2022-12-14	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.23	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.002	0.57	0.0	0.04	13.20	0.00	2.190	18.77	0.00	6.8	93.2	0.1	-1.00	1.12	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	8EYR	28693	2022-12-13	2022-10-28	4.0	4.25	4.10	4.0	0.005	0.75	0.0	0.05	17.46	0.01	2.099	23.70	0.27	11.5	88.3	0.2	-2.62	0.86	0.82	—	4.0	0.003	0.66	0.0	0.05	17.58	0.00	2.210	17.65	0.33	9.2	90.6	0.2	-2.06	0.44	0.86	0.82	—	13635	1705	4	0	0	0	0	logfile
✔	8EW3	28641	2022-12-12	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.09	0.00	2.260	3.12	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.004	0.57	0.0	0.04	13.47	0.00	1.068	6.12	0.96	2.4	97.6	0.0	1.33	1.18	0.75	0.90	3.48	11902	1540	9	0	5	0	0	logfile
✔	8EVU	28637	2022-12-12	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.75	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.004	0.54	0.0	0.04	13.46	0.00	1.105	4.75	0.56	2.4	97.6	0.0	1.43	0.42	0.76	0.91	3.98	11902	1540	9	0	5	0	0	logfile
✔	8EUP	24410	2022-12-15	2022-10-19	3.1	3.34	—	3.2	0.004	0.56	0.0	0.04	17.14	0.00	2.108	12.27	0.40	5.3	94.6	0.1	-0.11	0.72	0.69	1.81	3.2	0.002	0.53	0.0	0.03	16.88	0.00	2.001	12.74	0.40	4.0	95.9	0.1	0.63	0.40	0.74	0.72	1.55	78722	6156	41	1623	1	0	0	logfile
✔	8EUY	24420	2022-12-15	2022-10-19	3.0	3.03	—	3.0	0.003	0.51	0.0	0.04	17.44	0.00	2.180	10.19	2.88	3.6	96.2	0.1	0.10	0.77	0.77	2.72	3.0	0.002	0.56	0.0	0.04	17.38	0.00	2.067	11.23	3.21	3.7	96.2	0.1	0.66	1.53	0.77	0.77	2.73	80249	6123	41	1619	1	0	0	logfile
✔	8EV3	24421	2022-12-16	2022-10-19	3.0	3.06	—	3.0	0.003	0.48	0.0	0.03	16.62	0.00	2.194	8.95	2.43	3.6	96.4	0.1	0.09	0.76	0.75	2.84	3.0	0.004	0.58	0.0	0.04	16.90	0.00	2.068	11.31	3.84	4.0	95.9	0.1	0.52	1.52	0.76	0.76	2.71	84746	6605	42	1677	1	0	0	logfile
✔	8ETJ	24396	2022-12-15	2022-10-17	3.2	3.29	—	3.1	0.004	0.61	0.0	0.04	17.20	0.00	2.061	12.51	0.81	4.9	94.9	0.2	-0.83	0.80	0.81	2.29	3.1	0.004	0.63	0.0	0.04	17.16	0.00	2.087	13.81	0.62	4.7	95.2	0.1	-0.12	1.17	0.82	0.84	2.11	79857	4979	36	1961	1	0	0	logfile
✔	8ETi	24395	2022-12-16	2022-10-17	3.7	3.18	—	3.0	0.004	0.62	0.0	0.04	16.99	0.01	2.074	11.62	0.78	5.4	94.6	0.1	-3.47	0.51	0.44	0.44	3.1	0.006	0.74	0.0	0.04	17.31	0.00	1.993	13.31	0.47	5.5	94.5	0.0	-0.50	1.74	0.63	0.65	1.77	90456	7639	46	1812	1	0	0	logfile
✔	8ETG	24397	2022-12-17	2022-10-17	3.4	3.34	—	3.2	0.004	0.54	0.0	0.04	16.64	0.00	2.066	12.64	0.58	4.8	95.1	0.1	-0.31	0.60	0.53	0.47	3.2	0.006	0.77	0.0	0.04	17.26	0.01	1.974	17.34	0.77	5.1	94.8	0.1	-0.24	1.02	0.69	0.68	1.34	99257	7394	49	2226	1	0	0	logfile
✔	8ETH	24409	2022-12-15	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	16.49	0.01	2.088	10.21	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.004	0.59	0.0	0.04	16.56	0.00	2.062	10.80	0.44	4.3	95.5	0.2	0.26	1.11	0.63	0.60	2.46	77577	6161	42	1508	1	0	0	logfile
✔	8ETC	24398	2022-12-17	2022-10-16	3.1	3.22	—	3.1	0.002	0.53	0.0	0.03	16.07	0.00	2.067	10.50	0.70	3.9	95.9	0.2	-0.30	0.65	0.60	0.73	3.1	0.006	0.75	0.0	0.04	17.10	0.01	1.938	16.59	0.68	5.4	94.5	0.1	-0.49	0.97	0.72	0.72	1.82	95651	6128	43	2287	1	0	0	logfile
✔	8BC0	15958	2022-12-12	2022-10-14	3.09	3.54	2.95	3.5	0.004	0.59	0.0	0.04	13.16	0.01	2.052	17.33	7.06	5.0	95.0	0.0	0.18	0.54	0.60	1.08	3.5	0.004	0.72	0.0	0.04	15.54	0.01	2.079	21.25	0.34	4.9	95.1	0.0	-0.06	0.85	0.54	0.60	0.89	10861	1316	4	0	6	0	0	logfile
✔	8BC1	15959	2022-12-12	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.80	0.0	0.05	15.62	0.01	2.021	15.81	1.50	3.8	96.2	0.0	0.65	1.05	0.39	0.54	1.25	8684	1054	4	0	6	0	0	logfile
✔	8ESC	28575	2022-12-21	2022-10-13	3.1	3.13	3.05	3.2	0.002	0.51	0.0	0.04	13.90	0.00	2.156	7.03	0.02	5.0	95.0	0.0	-0.12	0.79	0.79	2.12	3.1	0.003	0.57	0.0	0.04	15.88	0.00	1.996	8.91	0.19	5.1	94.9	0.0	0.48	0.52	0.83	0.83	1.91	43279	5300	7	0	3	0	0	logfile

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