Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K1L	36794	2024-12-29	2023-07-11	3.44	3.80	3.50	3.7	0.004	1.17	0.0	0.05	16.42	0.01	2.067	19.32	0.37	5.9	94.1	0.0	-1.16	0.65	0.85	1.91	3.7	0.003	0.64	0.0	0.04	16.86	0.00	2.537	9.91	3.02	6.1	93.8	0.2	0.12	0.37	0.66	0.85	1.80	10026	1271	3	0	1	0	0	logfile
✔	8K1V	36805	2024-12-27	2023-07-11	3.48	3.80	3.32	3.9	0.001	0.31	0.0	0.03	13.71	0.00	2.283	2.43	0.00	0.6	99.4	0.0	5.96	0.54	0.76	1.54	3.9	0.003	0.56	0.0	0.04	14.71	0.00	2.480	4.01	2.94	1.7	98.3	0.0	4.79	0.74	0.53	0.79	2.49	4059	484	6	0	11	2	0	logfile
✔	8K20	36808	2024-12-29	2023-07-11	3.7	4.39	3.57	3.7	0.003	0.60	0.0	0.04	14.08	0.00	2.100	14.06	0.00	2.8	97.2	0.0	0.88	0.82	0.64	0.83	3.8	0.003	0.65	0.0	0.04	15.94	0.00	2.047	12.99	1.84	3.9	96.1	0.0	0.29	0.96	0.83	0.67	0.74	9356	1209	7	0	1	0	0	logfile
✔	8K1J	36793	2024-12-27	2023-07-11	3.0	3.30	3.06	3.4	0.001	0.34	0.0	0.03	13.84	0.00	2.296	2.67	0.00	0.4	99.6	0.0	5.90	0.58	0.77	0.99	3.3	0.003	0.52	0.0	0.04	14.88	0.00	2.513	2.55	2.21	2.1	97.9	0.0	4.72	0.60	0.62	0.83	1.10	4069	484	6	0	11	12	0	logfile
✔	8K1Z	36806	2024-12-27	2023-07-11	3.41	3.55	3.06	3.6	0.002	0.42	0.0	0.03	13.66	0.00	2.241	4.01	0.00	1.1	98.9	0.0	5.04	0.60	0.77	1.90	3.6	0.003	0.62	0.0	0.04	15.42	0.00	2.510	4.98	3.19	2.1	97.9	0.0	4.85	1.33	0.62	0.82	1.41	4059	484	6	0	11	2	0	logfile
✔	8PQL	17822	2024-12-30	2023-07-11	3.76	2.60	—	2.1	0.003	0.70	0.0	0.04	17.44	0.01	1.986	7.89	0.54	9.3	90.7	0.0	-0.67	0.78	0.73	1.62	2.1	0.003	0.65	0.0	0.04	17.62	0.00	2.275	7.47	4.60	8.4	91.6	0.0	-0.32	0.29	0.78	0.74	1.53	13553	1837	10	0	4	0	0	logfile
✔	8K1Q	36799	2024-12-27	2023-07-11	3.68	3.98	3.58	3.9	0.004	0.50	0.0	0.03	14.13	0.00	2.337	4.50	0.25	1.3	98.7	0.0	4.91	0.59	0.76	1.71	4.0	0.003	0.58	0.0	0.04	16.06	0.00	2.539	2.31	2.70	1.7	98.3	0.0	4.68	2.33	0.62	0.82	2.03	4058	484	6	0	8	4	0	logfile
✔	8K0X	36780	2024-12-28	2023-07-10	3.2	3.37	3.16	3.4	0.008	1.04	0.0	0.06	9.78	0.01	2.307	1.16	0.00	7.9	92.1	0.0	-6.65	0.67	0.84	4.34	3.4	0.003	0.62	0.0	0.04	14.09	0.00	2.556	3.61	2.72	5.4	94.6	0.0	-1.68	1.26	0.66	0.86	2.54	8447	1084	3	0	1	0	0	logfile
✔	8K19	36789	2024-12-27	2023-07-10	3.88	6.15	5.32	4.1	0.014	1.84	2.0	0.10	13.09	0.03	1.496	4.27	0.57	4.7	94.6	0.7	-1.84	0.64	0.53	0.52	3.9	0.004	0.70	0.0	0.04	13.97	0.00	2.484	28.77	1.13	7.4	92.6	0.0	-1.13	2.07	0.71	0.82	0.66	3224	414	3	0	0	0	0	logfile
✘	8K1D	36792	2024-12-27	2023-07-10	3.53	3.93	3.62	4.0	0.003	0.71	0.0	0.04	16.89	0.00	2.230	11.65	0.57	1.4	98.6	0.0	1.26	0.46	0.68	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4902	610	2	0	0	0	0	logfile
✔	8K15	36786	2024-12-29	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.007	0.83	0.0	0.05	24.74	0.01	1.756	4.81	0.00	0.0	0.0	0.0	—	0.27	0.67	0.80	—	10093	0	2	470	2	0	0	logfile
✔	8K1B	36791	2024-12-27	2023-07-10	3.47	3.90	3.47	3.8	0.005	0.71	0.0	0.05	16.50	0.01	2.357	10.66	0.85	2.8	97.2	0.0	-1.31	0.65	0.71	2.02	3.9	0.003	0.74	0.0	0.05	17.19	0.00	2.470	11.50	4.27	2.6	97.4	0.0	-0.60	2.45	0.59	0.71	1.69	4176	508	4	0	6	0	0	logfile
✔	8PQ2	17819	2024-12-27	2023-07-10	3.85	4.01	3.65	3.9	0.002	0.51	0.0	0.04	10.37	0.00	2.133	5.53	2.73	8.3	91.7	0.0	-2.04	0.60	0.79	3.14	3.9	0.003	0.56	0.0	0.04	13.11	0.00	2.285	6.20	3.03	8.6	91.1	0.3	-2.15	0.58	0.60	0.79	3.07	5956	390	4	0	1	0	2891	logfile
✔	8PQ5	17820	2024-12-27	2023-07-10	4.4	4.07	4.39	7.3	0.003	0.69	0.0	0.05	14.88	0.00	2.133	25.49	0.00	9.2	90.8	0.0	-1.84	0.79	0.69	—	7.2	0.003	0.76	0.0	0.05	14.86	0.01	2.389	22.57	0.00	9.6	90.4	0.0	-2.20	1.08	0.80	0.70	—	6300	782	5	0	2	0	0	logfile
✔	8K10	36782	2024-12-29	2023-07-10	3.2	3.49	3.28	3.5	0.005	0.72	0.0	0.05	15.77	0.00	2.210	10.91	0.39	2.3	97.7	0.0	0.96	0.65	0.75	2.51	3.5	0.004	0.61	0.0	0.04	16.08	0.00	2.445	7.41	3.14	3.1	96.9	0.0	1.43	0.50	0.60	0.78	2.37	9478	1176	8	0	16	0	0	logfile
✔	8K12	36784	2024-12-27	2023-07-10	3.3	3.67	3.56	3.6	0.005	0.71	0.0	0.05	14.82	0.00	2.209	10.54	0.50	0.9	99.1	0.0	1.25	0.48	0.70	1.60	3.6	0.003	0.74	0.0	0.04	16.57	0.00	2.414	14.29	2.68	2.0	98.0	0.0	2.12	0.99	0.46	0.77	0.62	5592	714	2	0	0	0	0	logfile
✔	8K13	36785	2024-12-28	2023-07-10	3.33	3.76	3.47	3.7	0.003	0.58	0.0	0.04	16.51	0.00	2.205	9.59	0.40	2.2	97.8	0.0	0.67	0.62	0.69	1.38	3.7	0.003	0.68	0.0	0.05	17.29	0.00	2.483	10.47	4.14	3.2	96.8	0.0	0.79	2.06	0.58	0.72	1.65	9078	1118	4	0	6	0	0	logfile
✔	8K17	36787	2024-12-29	2023-07-10	3.18	3.04	3.15	3.2	0.008	0.74	1.0	0.05	16.98	0.01	1.978	5.31	0.29	4.9	95.1	0.0	0.57	0.71	0.84	2.39	3.2	0.002	0.50	0.0	0.04	17.23	0.00	2.121	3.54	1.27	3.0	97.0	0.0	1.72	0.37	0.67	0.82	1.97	9748	1203	6	0	5	0	0	logfile
✔	8K11	36783	2024-12-27	2023-07-10	3.3	3.50	3.12	3.6	0.004	0.59	0.0	0.06	15.60	0.00	2.215	11.41	0.42	1.5	98.5	0.0	0.27	0.66	0.76	3.40	3.5	0.003	0.58	0.0	0.05	15.31	0.00	2.619	6.34	2.54	2.5	97.5	0.0	0.51	1.80	0.67	0.81	3.06	4402	526	8	0	16	0	0	logfile
✔	8K18	36788	2024-12-27	2023-07-10	3.68	5.01	5.15	3.7	0.014	1.85	0.0	0.09	13.98	0.03	1.995	12.12	0.85	7.1	92.9	0.0	-1.91	0.53	0.34	1.41	3.7	0.005	0.88	0.0	0.05	15.09	0.01	2.332	33.20	2.54	6.7	93.3	0.0	-1.56	2.93	0.73	0.74	0.87	3246	414	3	0	0	0	0	logfile

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