Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PSU	17862	2024-12-31	2023-07-13	3.18	2.77	3.14	3.1	0.003	0.45	0.0	0.03	17.34	0.00	1.917	3.46	0.00	2.2	97.6	0.2	1.54	0.71	0.82	3.55	3.1	0.002	0.47	0.0	0.03	17.33	0.00	2.423	1.92	0.60	2.1	97.8	0.1	1.51	1.13	0.72	0.83	3.33	16169	971	6	29	1	0	7957	logfile
✔	8PSQ	17860	2024-12-31	2023-07-13	2.65	2.51	2.61	2.6	0.003	0.47	0.0	0.04	18.19	0.00	1.928	2.79	1.19	2.0	97.9	0.1	1.30	0.73	0.89	3.82	2.6	0.003	0.51	0.0	0.04	18.03	0.00	2.292	2.17	2.03	1.8	98.2	0.0	1.46	0.26	0.73	0.89	4.20	16079	969	7	28	2	1	7898	logfile
✔	8PSD	17850	2024-12-27	2023-07-13	2.9	3.28	3.06	3.3	0.004	0.51	0.0	0.04	12.30	0.00	2.065	2.20	1.60	4.3	95.7	0.0	-0.16	0.64	0.81	3.11	3.3	0.002	0.48	0.0	0.04	13.27	0.00	2.405	2.02	1.45	4.3	95.7	0.0	-0.16	1.38	0.67	0.83	2.97	48067	3076	6	0	36	0	23498	logfile
✔	8K26	36829	2024-12-29	2023-07-12	3.6	3.91	3.69	3.7	0.006	1.31	1.0	0.07	17.74	0.01	2.221	8.76	0.71	5.7	94.1	0.2	-3.00	0.69	0.54	-0.04	3.7	0.006	1.01	1.0	0.05	17.51	0.00	2.233	23.17	2.56	5.8	94.0	0.2	-0.95	0.67	0.71	0.58	0.55	10549	1336	6	0	0	0	0	logfile
✔	8PR2	17832	2024-12-31	2023-07-12	3.8	3.87	3.70	3.9	0.005	1.03	0.0	0.05	18.62	0.01	1.770	5.14	0.74	2.5	97.4	0.1	-0.80	0.74	0.81	1.58	3.9	0.004	0.91	1.0	0.04	18.97	0.00	2.375	9.73	3.08	1.7	98.3	0.0	2.55	0.42	0.75	0.83	1.56	14906	1816	6	0	0	0	0	logfile
✔	8TGG	41235	2024-12-27	2023-07-12	3.6	2.40	3.59	2.2	0.006	0.86	0.0	0.05	18.10	0.01	2.212	22.24	0.49	2.0	97.9	0.1	0.53	0.72	0.72	1.84	2.2	0.004	0.68	0.0	0.04	17.12	0.01	2.593	8.02	6.25	2.4	97.6	0.0	1.55	0.97	0.73	0.73	1.50	5717	758	4	0	2	0	0	logfile
✔	8K25	36828	2024-12-29	2023-07-12	3.4	3.65	3.55	3.6	0.005	1.14	0.0	0.06	18.39	0.01	2.271	7.89	0.69	7.2	92.8	0.1	-3.18	0.63	0.52	0.39	3.6	0.003	0.69	0.0	0.04	18.44	0.00	2.518	14.29	4.14	6.8	93.2	0.1	-0.76	0.52	0.67	0.60	0.96	9961	1330	8	34	0	0	0	logfile
✔	8K24	36827	2024-12-31	2023-07-12	3.72	3.07	3.82	3.1	0.007	1.11	14.0	0.07	21.28	0.01	1.660	8.31	5.83	5.5	94.1	0.4	-2.76	0.83	0.78	2.41	3.0	0.005	0.74	2.0	0.04	20.32	0.00	0.820	16.09	3.94	4.6	95.1	0.2	-0.81	0.52	0.85	0.79	2.73	67211	7840	34	310	4	0	0	logfile
✔	8K21	36824	2024-12-29	2023-07-12	3.8	4.29	3.74	3.8	0.009	1.29	1.0	0.08	22.88	0.01	2.232	7.29	8.12	6.9	92.5	0.6	-3.31	0.78	0.78	1.46	3.7	0.003	0.80	0.0	0.04	20.60	0.00	2.483	15.57	1.94	4.9	95.0	0.2	-0.18	1.78	0.80	0.85	1.89	11389	1330	8	42	0	0	0	logfile
✔	8PR4	17834	2024-12-29	2023-07-12	3.5	4.03	3.51	3.8	0.008	1.33	0.0	0.07	17.21	0.01	2.309	4.25	1.00	7.5	92.4	0.2	-3.40	0.81	0.80	1.91	3.8	0.003	0.65	0.0	0.04	16.50	0.00	2.337	8.01	4.57	5.3	94.7	0.0	0.24	0.40	0.82	0.82	1.91	9494	1322	8	0	4	0	0	logfile
✔	8TGH	41236	2024-12-27	2023-07-12	3.5	2.39	3.45	2.2	0.007	0.81	0.0	0.05	17.21	0.01	2.269	16.16	0.98	2.5	97.5	0.0	0.62	0.79	0.82	2.22	2.2	0.003	0.65	0.0	0.04	16.22	0.01	2.617	5.36	3.25	2.9	97.1	0.0	2.35	0.74	0.78	0.79	2.11	5778	767	4	0	2	0	0	logfile
✔	8TGN	41242	2024-12-27	2023-07-12	3.3	2.50	3.28	2.9	0.005	0.97	0.0	0.05	18.68	0.01	2.195	28.85	0.49	1.3	98.5	0.1	0.16	0.71	0.73	1.69	2.9	0.004	0.74	0.0	0.04	17.47	0.01	2.559	11.47	4.25	2.0	98.0	0.0	1.42	0.36	0.72	0.73	1.35	5745	761	4	0	2	0	0	logfile
✔	8TGL	41240	2024-12-27	2023-07-12	3.4	2.34	3.39	3.3	0.005	0.80	0.0	0.04	17.87	0.01	2.218	30.23	0.82	1.7	98.1	0.1	1.90	0.73	0.71	2.60	3.3	0.004	0.78	0.0	0.04	16.39	0.01	2.457	11.91	3.76	2.9	97.1	0.0	1.33	1.30	0.74	0.74	2.73	5734	760	4	0	2	0	0	logfile
✔	8TGJ	41238	2024-12-27	2023-07-12	3.5	2.56	3.51	2.9	0.004	0.78	0.0	0.05	18.01	0.01	2.292	25.32	0.66	1.6	98.4	0.0	0.58	0.71	0.72	1.85	2.9	0.005	1.12	1.0	0.04	17.11	0.01	2.384	10.73	5.25	2.5	97.5	0.0	1.44	0.37	0.72	0.72	1.42	5720	761	3	0	1	0	0	logfile
✔	8TGK	41239	2024-12-27	2023-07-12	3.7	2.41	3.64	2.2	0.005	0.87	1.0	0.05	17.76	0.01	2.204	20.27	0.81	1.7	97.6	0.7	0.74	0.76	0.78	1.52	2.2	0.003	0.68	0.0	0.04	16.57	0.01	2.603	5.88	3.25	2.5	97.5	0.0	2.04	0.98	0.77	0.76	1.80	5772	766	4	0	2	0	0	logfile
✔	8K23	36826	2024-12-31	2023-07-12	3.75	2.53	3.95	3.0	0.007	1.11	14.0	0.07	21.27	0.01	1.237	8.81	5.81	5.6	94.0	0.4	-2.78	0.79	0.76	2.47	3.0	0.004	0.67	0.0	0.04	20.43	0.00	2.094	13.50	3.56	4.3	95.5	0.2	-0.78	0.54	0.82	0.77	2.64	67168	7840	34	310	4	0	0	logfile
✘	8K1M	36795	2024-12-28	2023-07-11	2.9	3.42	2.91	3.3	0.007	1.08	3.0	0.06	14.61	0.01	2.303	4.19	0.42	8.3	91.7	0.0	-1.85	0.62	0.86	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7148	951	4	0	2	0	0	logfile
✔	8K20	36808	2024-12-29	2023-07-11	3.7	4.39	3.57	3.7	0.003	0.60	0.0	0.04	14.08	0.00	2.100	14.06	0.00	2.8	97.2	0.0	0.88	0.82	0.64	0.83	3.8	0.003	0.65	0.0	0.04	15.94	0.00	2.047	12.99	1.84	3.9	96.1	0.0	0.29	0.96	0.83	0.67	0.74	9356	1209	7	0	1	0	0	logfile
✔	8K1Z	36806	2024-12-27	2023-07-11	3.41	3.55	3.06	3.6	0.002	0.42	0.0	0.03	13.66	0.00	2.241	4.01	0.00	1.1	98.9	0.0	5.04	0.60	0.77	1.90	3.6	0.003	0.62	0.0	0.04	15.42	0.00	2.510	4.98	3.19	2.1	97.9	0.0	4.85	1.33	0.62	0.82	1.41	4059	484	6	0	11	2	0	logfile
✔	8K1o	36797	2024-12-28	2023-07-11	2.9	3.14	2.87	3.2	0.007	1.00	0.0	0.05	17.98	0.01	1.945	3.29	0.42	6.0	94.0	0.0	-1.93	0.62	0.85	3.48	3.2	0.003	0.57	0.0	0.04	16.88	0.00	1.999	2.47	1.55	4.3	95.7	0.0	0.55	0.96	0.65	0.88	2.78	7163	937	6	0	6	0	0	logfile

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