Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K3R	36857	2024-12-29	2023-07-16	3.51	4.07	3.61	3.9	0.008	0.86	0.0	0.05	14.85	0.01	1.459	4.36	1.92	2.8	97.2	0.0	0.53	0.61	0.73	1.12	3.9	0.019	0.64	0.0	0.09	16.01	0.00	2.519	6.83	1.05	2.6	97.4	0.0	1.38	0.84	0.60	0.77	1.01	11061	1404	4	0	2	0	0	logfile
✔	8K3J	36853	2024-12-28	2023-07-16	3.3	3.53	3.52	3.4	0.004	0.69	0.0	0.05	20.46	0.00	2.138	8.54	0.31	4.7	95.1	0.2	-0.34	0.80	0.79	2.17	3.4	0.003	0.69	0.0	0.05	17.62	0.00	2.321	5.16	4.76	4.9	94.9	0.2	-0.23	0.38	0.80	0.78	2.39	9108	1148	8	0	16	0	0	logfile
✔	8K3o	36854	2024-12-27	2023-07-16	3.88	4.00	3.60	3.9	0.003	0.71	0.0	0.04	22.92	0.01	2.054	12.14	1.13	6.2	93.7	0.1	-1.14	0.79	0.70	0.82	3.9	0.004	0.78	1.0	0.04	23.70	0.00	2.111	14.57	4.98	7.3	92.6	0.1	-1.55	1.59	0.82	0.80	0.80	49261	2353	22	1432	0	0	0	logfile
✔	8K3Q	36856	2024-12-29	2023-07-16	2.6	2.98	2.74	2.9	0.008	0.87	0.0	0.05	14.73	0.01	1.495	4.57	1.89	3.4	96.6	0.0	0.38	0.66	0.82	3.35	2.9	0.027	0.71	0.0	0.04	15.93	0.01	2.630	3.31	0.86	3.1	96.9	0.0	1.91	1.20	0.66	0.83	3.62	11365	1448	4	0	2	0	0	logfile
✔	8K3P	36855	2024-12-29	2023-07-16	3.64	4.09	3.71	4.0	0.010	0.98	0.0	0.07	15.32	0.00	2.293	9.47	3.22	4.5	95.5	0.0	0.23	0.64	0.79	1.60	4.0	0.003	0.53	0.0	0.04	15.54	0.00	2.555	6.16	2.57	3.4	96.6	0.0	2.05	1.65	0.66	0.82	1.72	9906	1320	4	0	4	0	0	logfile
✔	8PTY	17925	2024-12-31	2023-07-16	3.58	3.60	3.53	3.7	0.005	0.65	0.0	0.05	14.26	0.00	2.184	11.96	0.13	8.6	91.4	0.0	-1.81	0.70	0.71	2.63	3.7	0.002	0.58	0.0	0.04	15.79	0.00	2.540	5.69	1.78	5.8	94.2	0.0	-1.45	1.28	0.80	0.83	2.13	14189	1786	4	0	2	0	0	logfile
✔	8K3S	36858	2024-12-31	2023-07-16	3.0	3.13	2.98	3.1	0.004	0.76	0.0	0.04	14.32	0.01	1.671	12.52	0.77	6.3	93.5	0.2	-0.59	0.67	0.82	2.53	3.2	0.003	0.64	0.0	0.04	16.36	0.00	2.306	5.03	2.25	6.7	93.2	0.2	0.47	0.52	0.67	0.84	2.53	15761	1864	8	0	17	0	0	logfile
✔	8K3C	36849	2024-12-29	2023-07-15	2.88	3.12	2.93	3.1	0.014	1.17	0.0	0.07	10.35	0.01	2.138	11.02	0.57	7.8	92.1	0.1	-3.08	0.48	0.67	3.05	3.1	0.004	0.66	0.0	0.05	13.77	0.00	2.524	10.65	2.03	5.6	94.4	0.0	-1.33	0.59	0.61	0.76	2.40	10813	1395	4	0	0	0	0	logfile
✔	8PTW	17879	2024-12-31	2023-07-15	2.91	3.20	2.93	3.1	0.004	0.78	0.0	0.05	11.31	0.01	2.299	3.99	0.00	1.8	98.2	0.0	0.35	0.78	0.81	3.44	3.1	0.003	0.58	0.0	0.04	13.62	0.01	2.443	5.22	1.07	1.8	98.2	0.0	2.14	0.34	0.80	0.84	2.72	14242	1878	4	0	0	0	0	logfile
✔	8K3H	36851	2024-12-28	2023-07-15	2.86	2.80	2.67	2.8	0.003	0.52	0.0	0.04	15.58	0.00	2.237	4.01	0.00	2.1	97.9	0.0	0.44	0.76	0.89	3.98	2.8	0.003	0.52	0.0	0.04	15.50	0.00	2.584	3.33	1.06	1.7	98.3	0.0	1.51	0.29	0.77	0.90	3.75	7460	960	4	0	2	0	0	logfile
✔	8K3i	36852	2024-12-28	2023-07-15	2.83	2.47	2.67	2.7	0.007	0.67	0.0	0.04	13.37	0.01	2.060	6.04	0.00	2.8	97.2	0.0	0.64	0.74	0.87	4.43	2.8	0.003	0.54	0.0	0.04	15.72	0.00	2.638	4.26	1.06	2.3	97.7	0.0	1.59	0.90	0.72	0.88	3.41	7372	960	2	0	0	0	0	logfile
✔	8K38	36847	2024-12-27	2023-07-14	3.2	3.30	3.16	3.3	0.003	0.52	1.0	0.04	12.99	0.00	2.215	4.22	0.12	1.7	98.3	0.0	1.76	0.74	0.88	3.22	3.3	0.003	0.49	0.0	0.04	15.58	0.00	2.416	2.95	1.97	1.7	98.3	0.0	1.81	0.45	0.74	0.91	2.65	50172	6396	24	0	0	0	0	logfile
✔	8THB	41252	2024-12-31	2023-07-14	3.2	3.49	3.29	3.4	0.003	0.55	0.0	0.04	16.45	0.00	2.192	8.31	0.37	2.4	97.6	0.0	0.17	0.73	0.85	2.22	3.4	0.003	0.57	0.0	0.04	16.82	0.00	1.939	8.24	2.43	2.6	97.4	0.1	1.26	0.39	0.73	0.86	2.15	14334	1782	10	0	8	0	0	logfile
✔	8K36	36845	2024-12-30	2023-07-14	3.48	3.55	3.15	3.6	0.008	0.81	0.0	0.06	12.36	0.00	2.254	3.21	0.80	1.8	98.2	0.0	-0.90	0.72	0.88	3.78	3.6	0.003	0.55	0.0	0.04	14.74	0.00	2.491	1.91	4.40	1.1	98.9	0.0	-0.60	0.54	0.71	0.90	3.01	14172	1848	12	0	0	0	0	logfile
✔	8K2W	36841	2024-12-27	2023-07-14	3.0	3.14	2.99	3.2	0.007	0.90	0.0	0.04	15.07	0.02	2.294	5.99	0.00	4.2	95.8	0.0	0.73	0.56	0.80	2.41	3.2	0.003	0.60	0.0	0.04	16.66	0.00	2.608	4.73	1.93	4.5	95.5	0.0	0.97	0.48	0.54	0.81	1.94	3143	386	3	0	4	0	0	logfile
✔	8K2X	36842	2024-12-28	2023-07-14	3.2	3.52	3.20	3.4	0.003	0.57	0.0	0.04	16.75	0.00	2.283	9.17	0.00	4.6	95.4	0.0	0.69	0.83	0.89	2.38	3.4	0.003	0.57	0.0	0.04	17.24	0.00	2.491	6.18	3.64	4.3	95.7	0.0	0.89	0.29	0.82	0.89	2.32	8900	1138	7	0	1	0	0	logfile
✔	8K34	36843	2024-12-28	2023-07-14	2.81	3.42	2.84	3.2	0.004	0.74	0.0	0.04	17.75	0.00	2.000	16.66	2.07	3.9	96.1	0.0	-0.23	0.68	0.68	1.79	3.2	0.004	0.69	0.0	0.04	18.08	0.00	2.005	13.80	2.46	4.3	95.7	0.0	-0.28	1.16	0.68	0.68	1.64	7187	863	4	4	1	0	0	logfile
✔	8PSo	17858	2024-12-31	2023-07-13	2.4	2.34	2.37	2.4	0.003	0.56	0.0	0.04	18.69	0.00	1.693	2.47	1.55	2.1	97.9	0.0	1.47	0.74	0.88	4.68	2.4	0.003	0.53	0.0	0.04	18.05	0.00	1.837	1.48	1.19	2.4	97.6	0.0	1.22	0.22	0.73	0.89	4.72	16201	971	13	28	4	44	7937	logfile
✔	8PSD	17850	2024-12-27	2023-07-13	2.9	3.28	3.06	3.3	0.004	0.51	0.0	0.04	12.30	0.00	2.065	2.20	1.60	4.3	95.7	0.0	-0.16	0.64	0.81	3.11	3.3	0.002	0.48	0.0	0.04	13.27	0.00	2.405	2.02	1.45	4.3	95.7	0.0	-0.16	1.38	0.67	0.83	2.97	48067	3076	6	0	36	0	23498	logfile
✔	8PT4	17867	2024-12-29	2023-07-13	3.33	4.03	3.35	3.8	0.002	0.53	0.0	0.04	11.88	0.00	2.215	11.04	4.94	3.1	96.3	0.6	-0.51	0.75	0.66	1.18	3.8	0.002	0.66	0.0	0.04	14.26	0.00	2.410	9.35	1.73	4.8	95.2	0.0	-0.14	1.18	0.83	0.79	1.94	11438	1437	4	0	0	0	0	logfile

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