Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JR8	36592	2024-12-30	2023-06-16	3.48	4.07	3.49	3.8	0.003	0.66	0.0	0.04	20.31	0.00	2.125	18.84	0.40	6.1	93.9	0.0	-1.72	0.83	0.79	1.51	3.8	0.004	0.69	0.0	0.05	20.53	0.00	2.472	16.60	4.76	6.9	93.0	0.1	-1.07	1.12	0.84	0.79	1.35	13127	1414	8	75	0	0	0	logfile
✔	8T6o	41073	2024-12-30	2023-06-16	3.1	3.88	3.19	3.5	0.009	1.23	1.0	0.06	19.52	0.01	2.217	4.26	0.41	1.3	98.7	0.0	-1.13	0.82	0.78	2.11	3.5	0.003	0.62	0.0	0.04	19.84	0.00	2.408	8.39	1.63	2.3	97.6	0.1	0.71	1.06	0.84	0.82	1.81	11904	1137	4	131	0	0	0	logfile
✔	8T6P	41074	2024-12-31	2023-06-16	3.15	3.81	3.23	3.5	0.017	1.28	3.0	0.06	18.66	0.01	1.556	6.58	0.64	2.3	97.7	0.0	-1.34	0.65	0.45	3.06	3.5	0.003	0.64	0.0	0.04	19.23	0.00	2.411	8.42	2.34	3.3	96.7	0.0	0.34	1.04	0.83	0.83	2.43	11176	1108	4	110	0	0	0	logfile
✔	8T6J	41069	2024-12-29	2023-06-16	3.5	3.65	—	3.5	0.003	0.56	0.0	0.04	13.81	0.00	2.196	6.10	0.00	5.1	94.9	0.0	0.00	0.80	0.79	1.76	3.5	0.003	0.83	1.0	0.04	15.79	0.00	2.515	5.53	2.73	5.3	94.7	0.0	0.16	0.33	0.80	0.79	1.85	11652	1534	4	0	2	0	0	logfile
✔	8JR9	36593	2024-12-28	2023-06-16	2.57	2.48	2.53	2.7	0.005	0.65	0.0	0.04	17.65	0.00	2.240	5.96	0.24	2.2	97.8	0.0	1.80	0.57	0.74	2.49	2.6	0.003	0.57	0.0	0.04	18.07	0.00	2.506	5.90	3.06	2.3	97.7	0.0	1.98	1.05	0.67	0.83	3.46	7893	1014	6	0	1	0	0	logfile
✔	8T6B	41068	2024-12-27	2023-06-15	3.72	4.04	3.75	4.0	0.004	0.78	0.0	0.04	14.45	0.01	2.237	5.02	0.00	2.6	97.4	0.0	-1.30	0.47	0.68	1.39	4.1	0.004	0.83	0.0	0.04	15.88	0.01	2.596	9.38	3.85	4.2	95.8	0.0	-0.27	0.46	0.47	0.68	1.32	2916	387	2	0	1	0	0	logfile
✔	8T69	41066	2024-12-27	2023-06-15	2.89	3.18	2.89	3.2	0.004	0.67	0.0	0.04	10.45	0.01	2.381	3.52	0.64	1.8	98.2	0.0	1.12	0.59	0.82	3.29	3.2	0.003	0.64	0.0	0.04	13.89	0.01	2.589	4.70	2.57	2.6	97.4	0.0	1.84	1.00	0.56	0.81	2.48	2923	386	2	0	1	0	0	logfile
✔	8T6A	41067	2024-12-27	2023-06-15	3.17	3.52	3.18	3.6	0.004	0.60	0.0	0.04	10.37	0.00	2.248	3.67	1.28	2.1	97.9	0.0	1.58	0.59	0.80	2.58	3.5	0.003	0.60	0.0	0.04	13.61	0.01	2.549	5.17	1.92	1.3	98.7	0.0	2.33	0.35	0.54	0.79	1.88	2947	387	2	0	1	0	0	logfile
✔	8T5S	41060	2024-12-27	2023-06-14	2.9	3.70	2.99	3.5	0.002	0.50	0.0	0.03	16.22	0.00	2.212	10.25	0.80	3.2	96.8	0.0	2.43	0.80	0.77	1.26	3.5	0.003	0.62	0.0	0.04	16.10	0.00	1.968	9.40	3.50	4.2	95.8	0.0	1.75	1.24	0.82	0.82	1.91	6799	693	4	60	3	0	0	logfile
✔	8PEo	17633	2024-12-30	2023-06-14	2.69	3.21	2.84	2.7	0.005	0.77	0.0	0.05	29.82	0.01	2.201	8.09	0.14	1.9	98.1	0.0	0.99	0.92	0.88	2.79	2.8	0.004	0.63	0.0	0.04	28.23	0.00	2.435	6.75	0.84	2.3	97.7	0.0	2.52	1.39	0.94	0.92	2.79	12835	853	12	294	0	0	0	logfile
✔	8T60	41062	2024-12-31	2023-06-14	3.29	3.54	3.31	3.4	0.003	0.51	0.0	0.04	11.07	0.00	2.114	4.09	1.85	6.6	93.4	0.0	0.46	0.70	0.78	3.49	3.4	0.003	0.55	0.0	0.04	13.31	0.00	2.083	5.76	1.60	5.4	94.6	0.0	0.57	0.63	0.70	0.79	3.11	14921	978	5	0	1	0	7418	logfile
✔	8PEP	17634	2024-12-30	2023-06-14	3.33	4.07	3.32	3.4	0.004	0.72	0.0	0.05	28.76	0.01	2.092	9.54	0.13	1.9	98.1	0.0	0.85	0.92	0.87	1.55	3.4	0.004	0.61	0.0	0.03	27.36	0.00	2.086	9.26	0.63	3.0	97.0	0.0	2.17	1.77	0.94	0.91	1.40	13492	939	12	294	0	0	0	logfile
✔	8JQN	36576	2024-12-30	2023-06-14	2.8	2.47	2.67	2.8	0.007	0.71	1.0	0.05	12.26	0.00	2.226	5.13	1.37	5.8	94.1	0.1	-0.89	0.54	0.75	4.97	2.8	0.002	0.58	0.0	0.04	15.26	0.00	2.538	3.23	1.37	4.4	95.6	0.0	-0.20	0.42	0.69	0.88	4.23	8919	1149	6	0	0	0	0	logfile
✔	8JQi	36573	2024-12-29	2023-06-14	4.1	4.43	4.25	4.2	0.005	0.85	0.0	0.05	13.61	0.01	2.226	25.62	0.08	5.2	94.8	0.0	-1.03	0.79	0.73	—	4.2	0.003	0.69	0.0	0.04	14.10	0.00	2.405	15.12	0.00	3.9	96.1	0.0	-0.88	1.25	0.79	0.72	—	11180	1369	2	0	0	0	0	logfile
✔	8JQS	36578	2024-12-30	2023-06-14	2.63	2.24	2.57	2.0	0.007	0.77	0.0	0.05	16.25	0.01	2.139	5.77	2.41	6.0	94.0	0.0	-1.47	0.79	0.80	4.04	2.0	0.005	0.74	0.0	0.05	17.39	0.01	2.446	4.62	2.52	5.3	94.7	0.0	-0.51	0.99	0.83	0.84	4.32	8890	1149	6	0	0	0	0	logfile
✔	8JQG	36571	2024-12-28	2023-06-14	3.72	3.93	3.77	3.9	0.004	0.82	0.0	0.05	17.22	0.00	2.217	22.35	0.00	5.1	94.9	0.0	-0.73	0.76	0.75	1.76	3.9	0.003	0.72	0.0	0.04	18.31	0.00	2.436	14.43	2.69	4.3	95.7	0.0	-0.17	0.59	0.76	0.77	1.35	8708	1061	1	0	0	0	0	logfile
✔	8JQH	36572	2024-12-29	2023-06-14	4.2	4.46	4.28	4.3	0.006	0.98	0.0	0.05	13.86	0.01	2.202	31.35	0.09	5.4	94.5	0.1	-1.95	0.80	0.76	—	4.3	0.003	0.69	0.0	0.04	14.22	0.00	2.404	14.31	0.00	4.5	95.5	0.0	-0.96	1.33	0.81	0.80	—	9920	1206	1	0	0	0	0	logfile
✔	8T5C	41048	2024-12-31	2023-06-13	4.7	4.69	4.43	4.5	0.005	0.84	0.0	0.05	20.84	0.01	2.044	5.82	1.11	13.5	85.9	0.6	-2.26	0.74	0.72	—	4.5	0.004	0.89	0.0	0.05	14.18	0.00	2.301	17.35	0.00	14.5	85.0	0.5	-2.48	1.79	0.78	0.79	—	14189	1651	35	0	91	0	0	logfile
✔	8PE8	17629	2024-12-29	2023-06-13	3.46	3.95	3.86	3.9	0.002	0.53	0.0	0.04	18.53	0.00	2.221	11.61	0.48	3.4	96.6	0.0	0.65	0.71	0.77	0.76	3.9	0.002	0.59	0.0	0.04	18.63	0.00	2.468	9.87	4.49	3.5	96.5	0.0	0.63	0.39	0.74	0.81	0.59	54782	7392	14	0	0	0	0	logfile
✔	8JPX	36489	2024-12-30	2023-06-13	2.9	3.21	3.11	3.2	0.003	0.56	0.0	0.04	21.05	0.01	1.900	6.83	0.50	7.3	92.7	0.0	-0.57	0.76	0.89	3.28	3.2	0.004	0.62	0.0	0.05	21.44	0.00	1.866	5.46	2.20	7.4	92.4	0.1	-0.51	0.24	0.70	0.89	3.16	14362	1540	12	80	6	0	0	logfile

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