Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iZ7	35834	2024-12-29	2023-04-06	3.8	4.27	3.88	4.1	0.004	0.77	0.0	0.04	13.69	0.00	2.220	6.53	0.00	5.2	94.8	0.0	-4.30	0.58	0.67	0.95	4.1	0.002	0.64	0.0	0.04	15.91	0.00	2.579	4.22	1.78	6.3	93.7	0.0	-1.19	1.28	0.67	0.80	0.85	9830	1229	2	0	1	0	0	logfile
✘	8iZ9	35836	2024-12-29	2023-04-06	2.95	3.38	3.07	3.3	0.002	0.56	0.0	0.04	14.57	0.01	2.273	7.52	0.00	2.4	97.6	0.0	-0.94	0.52	0.61	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9779	1224	2	0	1	0	0	logfile
✔	8SD3	40349	2024-12-31	2023-04-06	2.95	3.05	3.06	3.2	0.010	1.08	0.0	0.04	16.42	0.01	2.187	9.06	0.00	1.3	98.7	0.0	1.86	0.54	0.76	3.98	3.1	0.003	0.51	0.0	0.04	15.84	0.01	2.097	7.68	0.65	1.3	98.7	0.0	3.28	0.46	0.56	0.81	3.44	14656	948	8	0	28	0	6824	logfile
✔	8oP1	17035	2024-12-31	2023-04-06	3.5	3.75	3.42	3.7	0.006	0.75	0.0	0.05	15.51	0.00	2.154	12.80	0.00	6.3	93.7	0.0	-0.39	0.65	0.79	1.94	3.7	0.003	0.59	0.0	0.04	17.12	0.00	2.357	8.44	2.03	3.3	96.7	0.0	1.04	0.44	0.64	0.77	1.27	15415	1890	10	35	0	0	0	logfile
✔	8ooU	17031	2024-12-30	2023-04-06	2.9	3.00	2.93	2.9	0.021	1.03	0.0	0.04	14.49	0.00	2.203	9.12	0.00	2.4	97.6	0.0	0.71	0.80	0.85	3.26	2.9	0.003	0.54	0.0	0.04	16.45	0.00	2.557	7.40	1.80	1.4	98.6	0.0	1.72	0.36	0.82	0.87	2.78	61800	7560	22	140	0	0	0	logfile
✔	8SDA	40350	2024-12-28	2023-04-06	3.32	3.41	3.16	3.4	0.008	1.11	0.0	0.04	15.99	0.00	2.225	15.46	0.00	2.7	97.3	0.0	1.62	0.63	0.81	2.02	3.5	0.003	0.57	0.0	0.04	16.06	0.00	2.557	7.63	1.63	2.0	98.0	0.0	3.09	0.95	0.65	0.85	1.67	7414	939	8	0	19	0	0	logfile
✔	8ooY	17033	2024-12-27	2023-04-06	4.0	3.79	3.92	3.7	0.004	0.68	0.0	0.04	20.02	0.00	2.016	12.57	0.79	5.1	94.9	0.0	-0.97	0.81	0.77	—	3.7	0.003	0.64	0.0	0.04	21.22	0.00	2.099	9.72	1.77	4.5	95.5	0.0	0.10	0.45	0.81	0.77	—	5828	604	5	51	1	0	0	logfile
✔	8iZ8	35835	2024-12-29	2023-04-06	3.13	3.49	3.24	3.4	0.002	0.50	0.0	0.04	14.07	0.00	2.264	6.14	0.00	1.9	98.1	0.0	-0.97	0.55	0.71	0.44	3.4	0.003	0.59	0.0	0.04	16.36	0.00	2.567	7.55	1.77	2.8	97.2	0.0	1.49	1.23	0.60	0.82	1.41	9805	1230	1	0	0	0	0	logfile
✔	8iYQ	35827	2024-12-30	2023-04-05	2.46	2.22	2.69	2.0	0.003	0.52	0.0	0.04	18.29	0.00	2.305	4.17	0.54	4.4	95.6	0.0	0.39	0.70	0.73	3.86	2.0	0.005	0.58	0.0	0.04	19.19	0.00	2.449	4.70	1.54	4.6	95.3	0.1	0.03	0.41	0.83	0.83	3.70	13081	1198	4	147	0	0	0	logfile
✔	8ooF	17012	2024-12-27	2023-04-05	2.9	1.91	3.05	2.8	0.004	0.71	0.0	0.05	13.65	0.01	2.043	2.60	0.00	2.9	97.1	0.0	-0.80	0.84	0.83	4.92	2.8	0.003	0.64	0.0	0.04	16.34	0.00	1.995	5.08	2.36	3.1	96.9	0.0	0.59	1.96	0.85	0.84	4.32	4479	556	3	0	2	0	0	logfile
✔	8ooT	17028	2024-12-27	2023-04-05	2.85	3.10	2.87	2.8	0.003	0.64	0.0	0.05	13.62	0.01	1.743	2.03	0.00	3.5	96.5	0.0	-0.61	0.89	0.87	5.43	2.8	0.004	0.67	0.0	0.04	15.22	0.00	1.953	4.97	1.93	2.4	97.6	0.0	0.81	0.76	0.89	0.88	4.40	4479	556	3	0	2	0	0	logfile
✔	8ooS	17027	2024-12-30	2023-04-05	3.29	1.76	3.20	3.1	0.007	1.29	0.0	0.05	24.79	0.01	1.879	4.57	0.00	3.2	96.8	0.0	-2.38	0.71	0.73	2.66	3.1	0.004	0.79	0.0	0.04	25.72	0.00	1.061	8.30	1.79	3.1	96.9	0.0	0.87	1.59	0.74	0.74	1.64	12307	966	10	217	3	0	0	logfile
✔	8SCX	40346	2024-12-27	2023-04-05	2.7	3.26	2.76	3.1	0.006	0.70	0.0	0.04	14.97	0.00	2.240	5.56	0.18	1.9	98.1	0.0	1.27	0.69	0.85	4.05	3.1	0.003	0.57	0.0	0.04	16.53	0.00	2.398	5.30	1.97	2.1	97.9	0.0	2.51	0.42	0.64	0.83	3.12	5753	760	7	0	2	0	0	logfile
✔	8SC6	40339	2024-12-27	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.48	0.0	0.04	12.50	0.00	2.625	3.28	2.43	0.9	99.1	0.0	3.08	0.47	0.53	0.80	2.18	3479	447	2	0	1	0	0	logfile
✔	8SC4	40337	2024-12-27	2023-04-04	3.46	3.65	3.43	3.6	0.004	0.68	0.0	0.04	10.98	0.03	2.296	2.80	0.00	2.9	97.1	0.0	-0.96	0.57	0.77	2.57	3.6	0.003	0.77	0.0	0.04	15.26	0.00	2.536	10.08	3.42	2.2	97.8	0.0	2.66	1.20	0.57	0.79	2.93	3544	456	2	0	1	0	0	logfile
✔	8iYD	35818	2024-12-27	2023-04-04	3.1	3.64	3.35	3.5	0.004	0.81	1.0	0.05	17.22	0.01	2.090	19.17	0.98	9.5	89.8	0.8	-2.30	0.73	0.77	2.04	3.5	0.004	0.75	1.0	0.05	17.32	0.01	2.285	11.50	6.61	7.0	92.6	0.4	-1.76	0.32	0.73	0.78	1.86	49344	6639	30	0	0	0	0	logfile
✔	8iY9	35817	2024-12-28	2023-04-04	3.37	3.65	3.39	3.7	0.005	0.90	1.0	0.05	12.94	0.01	2.123	3.88	1.07	3.1	96.9	0.0	-0.48	0.70	0.79	3.58	3.7	0.003	0.60	0.0	0.04	14.29	0.00	2.536	4.40	2.93	2.3	97.7	0.0	0.51	0.44	0.70	0.82	3.01	8121	1130	6	0	1	0	0	logfile
✔	8iY7	35816	2024-12-27	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.024	3.40	0.0	0.11	26.86	0.01	2.168	45.90	16.67	41.7	51.4	6.9	-6.77	2.44	0.30	0.57	1.40	1464	216	24	0	0	0	0	logfile
✔	8SC1	40334	2024-12-27	2023-04-04	2.92	3.14	2.89	3.2	0.003	0.68	0.0	0.04	10.47	0.01	2.266	1.15	0.00	2.5	97.5	0.0	-0.78	0.58	0.81	2.42	3.2	0.002	0.56	0.0	0.03	13.85	0.00	2.555	2.45	2.16	1.1	98.9	0.0	2.62	1.98	0.60	0.82	1.11	3447	446	1	0	0	0	0	logfile
✔	8iY6	35815	2024-12-27	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.003	0.65	0.0	0.04	14.66	0.00	2.530	9.47	1.77	1.3	98.7	0.0	2.40	0.53	0.42	0.63	1.34	2495	314	2	0	0	0	0	logfile

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