Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iEo	35388	2024-12-31	2023-02-15	3.78	3.89	3.63	3.9	0.004	1.20	0.0	0.04	15.04	0.00	2.029	3.19	0.11	3.8	96.2	0.0	0.87	0.58	0.64	0.53	3.9	0.004	1.13	1.0	0.04	15.87	0.01	1.879	4.97	2.04	7.0	92.9	0.1	-0.31	0.73	0.64	0.74	0.81	16260	1031	2	0	3	0	8260	logfile
✔	8G6Q	29778	2024-12-30	2023-02-15	3.41	3.90	3.43	3.6	0.003	0.61	0.0	0.04	27.96	0.00	2.164	9.72	0.14	3.2	96.8	0.0	2.17	0.86	0.83	0.81	3.6	0.004	0.60	0.0	0.03	27.80	0.00	2.064	9.10	3.61	3.2	96.8	0.0	2.08	0.35	0.88	0.85	0.72	12485	825	11	290	0	0	0	logfile
✘	8iEN	35387	2024-12-28	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7678	991	2	0	4	0	0	logfile
✔	8G6G	29767	2024-12-30	2023-02-15	2.93	3.16	2.92	3.1	0.003	0.57	0.0	0.04	28.34	0.00	2.238	4.36	1.16	2.1	97.9	0.0	2.83	0.86	0.86	2.41	3.1	0.005	0.59	0.0	0.04	28.23	0.00	2.203	4.10	2.03	1.6	98.4	0.0	2.79	0.17	0.88	0.89	2.44	12985	825	11	314	0	0	0	logfile
✔	8iES	35392	2024-12-28	2023-02-15	3.73	4.01	3.68	4.0	0.003	1.16	0.0	0.04	13.70	0.00	2.268	5.19	0.00	6.0	94.0	0.0	-3.84	0.60	0.66	0.28	3.9	0.003	1.01	0.0	0.04	16.25	0.01	1.921	7.29	1.71	8.9	91.1	0.0	-1.20	1.55	0.67	0.78	0.99	7965	1026	2	0	3	0	0	logfile
✔	8G6S	29781	2024-12-30	2023-02-15	3.47	3.91	3.49	3.6	0.004	0.59	0.0	0.03	27.64	0.00	2.149	8.53	0.43	2.5	97.5	0.0	2.29	0.87	0.84	1.28	3.7	0.003	0.59	0.0	0.03	27.44	0.00	2.481	7.47	2.60	3.0	97.0	0.0	2.60	0.40	0.89	0.87	0.75	12480	824	11	290	0	0	0	logfile
✔	8iEK	35384	2024-12-31	2023-02-15	3.2	3.88	3.60	3.9	0.003	0.67	0.0	0.04	14.69	0.00	2.245	5.26	0.23	5.4	94.3	0.3	0.51	0.54	0.64	0.96	3.9	0.003	0.62	0.0	0.04	15.84	0.01	2.387	4.83	1.35	5.7	94.0	0.3	0.14	0.83	0.55	0.68	1.18	16344	1036	2	0	2	0	8299	logfile
✔	8iEJ	35383	2024-12-31	2023-02-15	3.12	3.65	3.13	3.1	0.006	0.64	0.0	0.04	26.50	0.00	1.421	11.02	1.32	1.9	98.1	0.0	1.90	0.90	0.86	2.06	3.1	0.004	0.64	0.0	0.04	26.73	0.00	2.119	10.00	1.20	2.9	97.1	0.0	2.00	0.45	0.90	0.88	1.27	14086	1030	15	294	4	0	0	logfile
✔	8G6F	29765	2024-12-28	2023-02-15	2.58	2.79	2.70	2.7	0.004	0.51	0.0	0.04	16.10	0.01	2.197	2.66	0.51	1.8	98.2	0.0	1.59	0.82	0.91	4.61	2.8	0.004	0.55	0.0	0.04	16.65	0.00	2.504	4.24	1.98	1.6	98.4	0.0	1.85	0.23	0.81	0.91	4.39	52394	6466	60	0	4	599	0	logfile
✔	8G6H	29769	2024-12-30	2023-02-15	3.06	3.28	3.07	3.1	0.003	0.56	0.0	0.04	28.19	0.00	2.254	5.31	0.00	1.5	98.5	0.0	2.68	0.89	0.89	3.05	3.1	0.004	0.55	0.0	0.03	28.16	0.00	2.432	3.98	1.74	2.2	97.8	0.0	2.92	0.88	0.90	0.91	2.60	12974	824	11	314	0	0	0	logfile
✔	8iEM	35386	2024-12-28	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.004	1.05	1.0	0.04	17.08	0.01	2.228	8.33	2.43	7.6	92.4	0.0	-0.92	0.94	0.56	0.71	0.28	7829	1011	2	0	3	0	0	logfile
✔	8G6R	29779	2024-12-29	2023-02-15	3.4	4.07	3.37	3.8	0.005	0.51	0.0	0.04	14.61	0.00	1.919	8.84	0.00	4.7	95.3	0.0	-0.24	0.85	0.84	2.56	3.8	0.003	0.70	0.0	0.04	16.29	0.00	2.516	10.05	2.95	2.5	97.5	0.0	0.52	1.53	0.85	0.86	1.65	9406	1075	6	40	2	0	0	logfile
✔	8G6i	29770	2024-12-30	2023-02-15	4.23	4.53	4.35	4.2	0.003	0.68	0.0	0.05	13.13	0.01	2.143	10.55	0.00	9.3	90.4	0.3	-3.49	0.69	0.42	—	4.2	0.005	0.90	0.0	0.05	14.30	0.01	2.465	24.34	0.00	14.7	85.0	0.4	-4.03	2.56	0.74	0.58	—	13287	1665	5	0	4	0	0	logfile
✔	8iER	35391	2024-12-31	2023-02-15	4.87	5.08	4.32	4.9	0.002	0.53	0.0	0.04	12.91	0.00	1.978	6.35	0.00	7.4	92.3	0.3	-0.61	0.48	0.46	—	4.9	0.002	0.58	0.0	0.04	12.94	0.00	2.424	6.21	0.00	9.5	90.3	0.2	-0.89	1.27	0.52	0.55	—	15257	967	2	0	1	0	7758	logfile
✔	8iEQ	35390	2024-12-28	2023-02-15	2.73	2.97	2.75	3.0	0.007	0.79	0.0	0.04	14.18	0.01	2.159	2.89	0.00	3.5	96.5	0.0	3.06	0.49	0.79	2.86	3.0	0.003	0.57	0.0	0.04	15.42	0.01	2.398	4.64	2.53	2.8	97.2	0.0	3.90	1.22	0.55	0.83	2.23	8900	1120	8	0	4	0	0	logfile
✔	8iEi	35382	2024-12-27	2023-02-15	2.62	2.17	2.60	2.0	0.007	0.80	0.0	0.04	14.11	0.01	2.227	2.71	0.00	3.8	96.2	0.0	3.06	0.74	0.78	2.44	2.0	0.003	0.55	0.0	0.04	15.73	0.01	2.530	5.21	1.01	3.1	96.9	0.0	4.11	1.04	0.78	0.82	2.96	4469	563	4	0	2	0	0	logfile
✔	8CK1	16689	2024-12-30	2023-02-14	3.9	3.75	3.90	3.8	0.004	0.75	0.0	0.05	16.95	0.00	2.200	15.75	0.59	8.4	91.6	0.0	-2.07	0.42	0.81	1.48	3.7	0.005	0.72	0.0	0.05	17.88	0.00	2.445	12.66	5.05	9.7	90.3	0.0	-1.81	0.53	0.42	0.82	1.81	12580	1616	6	0	0	0	0	logfile
✔	8CK0	16688	2024-12-27	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.09	0.00	2.414	9.25	4.11	3.6	96.4	0.0	2.05	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	8G5V	29756	2024-12-30	2023-02-14	3.0	2.99	4.36	3.8	0.004	0.61	0.0	0.04	12.94	0.01	2.223	7.63	0.00	2.9	97.1	0.0	2.14	0.25	0.24	0.28	3.1	0.003	0.75	0.0	0.04	16.67	0.01	2.467	11.22	1.11	2.3	97.7	0.0	1.37	3.07	0.47	0.78	2.28	13739	1718	12	0	0	0	0	logfile
✔	8G5o	29751	2024-12-30	2023-02-13	2.61	3.53	2.82	3.3	0.005	0.84	0.0	0.04	16.53	0.01	2.003	5.69	1.72	5.6	94.4	0.0	0.26	0.66	0.53	1.42	3.3	0.004	0.74	0.0	0.04	17.47	0.01	2.168	11.90	4.76	8.1	91.9	0.0	-0.39	0.95	0.73	0.72	1.38	11952	1716	5	38	0	0	0	logfile

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