Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JST	61782	2024-12-27	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.64	0.0	0.05	12.37	0.00	2.445	0.00	1.85	5.7	94.3	0.0	-1.77	0.73	0.47	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	9DTT	47165	2024-12-28	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.7	0.004	0.98	1.0	0.04	20.04	0.01	2.349	14.36	1.62	6.5	93.5	0.0	-1.06	1.19	0.54	0.42	0.74	8274	850	3	67	2	0	0	logfile
✔	9DTQ	47156	2024-12-30	2024-10-01	2.87	3.14	2.91	3.2	0.003	0.54	0.0	0.17	18.95	0.01	2.188	4.83	4.08	3.6	96.2	0.1	-0.06	0.66	0.85	3.48	3.2	0.002	0.52	0.0	0.04	18.56	0.00	2.433	4.70	2.94	3.7	96.2	0.1	0.17	0.27	0.66	0.84	3.34	12162	1523	5	0	1	0	0	logfile
✔	9JSX	61786	2024-12-27	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.59	0.0	0.05	12.59	0.00	2.670	4.97	0.00	6.2	93.8	0.0	-1.34	0.76	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	9JSW	61785	2024-12-27	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.003	0.62	0.0	0.05	13.75	0.00	2.491	0.47	0.46	4.5	95.5	0.0	-1.86	1.55	0.46	0.91	7.33	4304	280	8	0	0	0	2128	logfile
✔	9JSU	61783	2024-12-27	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	2.0	0.003	0.57	0.0	0.05	12.99	0.00	2.697	1.00	0.00	2.8	97.2	0.0	-3.08	1.14	0.52	0.92	8.41	4040	264	8	0	0	0	2000	logfile
✔	9JSV	61784	2024-12-27	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.26	0.00	2.657	3.79	0.00	4.3	95.7	0.0	-0.83	0.55	0.49	0.93	8.36	4248	272	8	0	0	0	2104	logfile
✔	9DTG	47155	2024-12-28	2024-09-30	3.83	4.14	3.79	4.1	0.003	0.65	0.0	0.04	14.39	0.00	2.199	7.26	0.79	9.2	90.6	0.2	-3.94	0.70	0.75	1.58	4.1	0.003	0.63	0.0	0.04	15.72	0.00	2.526	6.70	4.50	10.8	89.1	0.1	-3.62	1.01	0.71	0.77	1.55	8069	1023	2	0	0	0	0	logfile
✔	9JR2	61746	2024-12-29	2024-09-29	2.8	2.91	—	3.0	0.003	0.51	0.0	0.04	14.04	0.00	2.142	3.21	0.31	2.8	97.2	0.0	0.54	0.26	0.61	3.01	2.9	0.003	0.59	0.0	0.04	15.60	0.00	2.495	6.52	1.77	3.2	96.8	0.0	1.11	0.64	0.48	0.76	2.78	9418	1225	8	0	1	1	0	logfile
✔	9JR3	61747	2024-12-29	2024-09-29	2.8	2.91	—	2.9	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	2.9	0.003	0.56	0.0	0.04	15.48	0.00	2.534	6.72	3.12	2.7	97.2	0.1	1.15	0.87	0.48	0.76	2.24	9455	1228	9	0	3	1	0	logfile
✔	9JQT	61741	2024-12-27	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.1	0.003	0.51	0.0	0.04	14.88	0.00	2.621	6.21	3.31	1.7	98.3	0.0	0.80	0.32	0.54	0.79	3.14	5669	720	4	0	0	0	0	logfile
✘	9GUS	51618	2024-12-28	2024-09-20	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55373	2597	26	1634	125	0	0	logfile
✘	9GUP	51615	2024-12-28	2024-09-20	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53689	2594	24	1556	86	0	0	logfile
✘	9GUQ	51616	2024-12-28	2024-09-20	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55411	2595	26	1636	128	0	0	logfile
✘	9GUU	51620	2024-12-28	2024-09-20	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55336	2596	25	1633	120	0	0	logfile
✘	9GUV	51621	2024-12-28	2024-09-20	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55998	2774	26	1633	86	0	0	logfile
✘	9GUT	51619	2024-12-29	2024-09-20	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58183	2939	27	1633	137	0	0	logfile
✔	9DMY	47020	2024-12-27	2024-09-16	2.8	2.57	2.74	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.006	0.78	0.0	0.05	18.42	0.00	2.574	15.88	3.08	8.1	91.9	0.0	-4.26	1.36	0.46	0.80	3.36	5550	690	5	0	0	0	0	logfile
✔	9JKQ	61567	2024-12-28	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.002	0.51	0.0	0.04	15.93	0.00	2.595	5.10	1.97	2.6	97.4	0.0	1.31	1.24	0.67	0.84	2.85	8386	1055	6	0	1	0	0	logfile
✔	9JKB	61550	2024-12-29	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.005	1.02	1.0	0.04	17.36	0.00	2.376	15.20	2.56	4.5	95.5	0.1	0.41	1.31	0.79	0.82	1.08	9532	1179	5	0	0	0	0	logfile

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