Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DMi	27539	2024-12-28	2022-07-08	3.26	4.04	3.27	3.5	0.004	0.81	0.0	0.06	14.47	0.01	2.117	8.99	0.00	5.9	94.1	0.0	-1.20	0.82	0.78	3.33	3.5	0.004	0.80	0.0	0.04	14.83	0.00	2.503	6.76	1.62	4.6	95.4	0.0	0.15	0.77	0.87	0.86	2.88	8259	951	30	0	42	0	0	logfile
✔	7YFC	33785	2024-12-29	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.002	0.54	0.0	0.04	18.03	0.00	2.487	4.75	4.04	2.7	97.3	0.0	1.06	1.28	0.68	0.85	2.94	9882	1262	7	0	2	0	0	logfile
✔	8DMo	27545	2024-12-28	2022-07-08	3.9	5.15	3.90	4.1	0.003	0.63	0.0	0.04	14.36	0.00	2.239	9.02	0.00	3.0	96.9	0.1	1.78	0.74	0.67	0.80	4.2	0.003	0.76	0.0	0.04	15.98	0.00	2.491	10.46	0.92	2.4	97.6	0.0	1.96	0.62	0.86	0.87	0.78	8912	1150	2	0	0	0	0	logfile
✔	8DM4	27526	2024-12-27	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.90	0.0	0.06	13.36	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.005	0.66	0.0	0.05	15.29	0.00	2.397	8.25	2.06	3.1	96.9	0.0	0.10	1.17	0.68	0.83	5.38	4018	497	5	0	6	0	0	logfile
✔	8DLV	27517	2024-12-27	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.88	0.0	0.06	13.40	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.003	0.53	0.0	0.04	14.94	0.00	2.482	5.70	1.00	2.5	97.5	0.0	1.79	0.61	0.83	0.87	2.20	6553	797	4	0	7	0	0	logfile
✔	8DMX	27548	2024-12-30	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.003	0.57	0.0	0.04	15.96	0.00	1.952	3.48	1.75	2.6	97.4	0.0	-0.49	0.51	0.70	0.91	2.33	11748	1488	8	0	8	0	0	logfile
✔	8DM6	27528	2024-12-27	2022-07-08	2.77	3.36	2.83	3.3	0.006	0.94	0.0	0.06	14.08	0.01	2.282	3.28	0.57	1.6	98.4	0.0	-0.08	0.77	0.83	2.73	3.2	0.004	0.68	0.0	0.04	16.29	0.00	2.484	7.34	2.43	2.1	97.9	0.0	1.35	1.59	0.76	0.83	3.03	6559	796	4	0	7	0	0	logfile
✔	8DLS	27514	2024-12-27	2022-07-08	2.66	3.23	2.64	3.1	0.006	0.92	0.0	0.06	12.29	0.01	2.288	4.45	0.00	4.8	95.2	0.0	-0.59	0.70	0.83	4.60	3.1	0.004	0.67	0.0	0.05	14.56	0.00	2.369	8.77	2.76	3.3	96.7	0.0	0.43	0.47	0.70	0.83	4.50	4017	495	5	0	7	0	0	logfile
✔	8DM0	27522	2024-12-27	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.01	0.0	0.06	12.72	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.004	0.65	0.0	0.05	14.98	0.00	2.544	8.68	1.87	4.2	95.8	0.0	-0.92	0.46	0.60	0.82	2.53	2480	314	3	0	1	0	0	logfile
✔	8DLN	27507	2024-12-27	2022-07-08	3.04	3.75	3.10	3.4	0.005	0.86	0.0	0.06	13.35	0.01	2.303	2.81	0.29	1.8	98.2	0.0	-0.21	0.83	0.85	3.19	3.5	0.004	0.61	0.0	0.04	14.88	0.00	2.473	7.42	1.00	2.5	97.5	0.0	1.66	2.31	0.84	0.87	2.85	6553	797	4	0	7	0	0	logfile
✔	8DMH	27538	2024-12-30	2022-07-08	3.19	3.54	3.17	3.2	0.003	0.60	0.0	0.04	16.83	0.00	2.149	9.05	0.00	4.3	95.7	0.0	-1.30	0.82	0.83	3.37	3.2	0.006	0.73	0.0	0.05	15.29	0.00	2.377	8.19	1.87	4.5	95.5	0.0	-0.71	4.01	0.83	0.85	2.75	14259	1725	36	0	45	0	0	logfile
✔	8DM8	27530	2024-12-27	2022-07-08	2.68	3.21	2.72	3.1	0.006	0.89	0.0	0.06	13.50	0.01	2.306	3.39	0.72	1.8	98.2	0.0	-0.72	0.78	0.85	3.05	3.1	0.004	0.63	0.0	0.04	15.59	0.00	2.519	6.24	1.88	2.4	97.6	0.0	1.26	1.21	0.79	0.87	2.93	6479	794	4	0	3	0	0	logfile
✔	8DMB	27533	2024-12-30	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	23.25	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.54	0.0	0.03	23.44	0.01	1.993	1.97	1.48	2.5	97.5	0.0	0.63	0.56	0.69	0.83	4.50	14225	328	5	275	2	0	5728	logfile
✔	8DLF	27500	2024-12-29	2022-07-07	3.23	3.07	3.22	3.0	0.009	1.29	0.0	0.16	25.90	0.01	2.103	35.48	8.48	8.3	90.2	1.4	-1.74	0.60	0.48	0.90	3.0	0.004	0.74	0.0	0.04	26.17	0.01	2.479	19.28	5.01	9.8	89.4	0.8	-1.86	1.72	0.66	0.56	0.78	7167	631	10	112	0	4	0	logfile
✔	8DL8	27499	2024-12-27	2022-07-07	3.0	4.08	3.15	3.6	0.003	0.53	0.0	0.04	16.82	0.01	1.612	6.82	3.54	2.5	97.3	0.1	2.02	0.75	0.82	1.99	3.7	0.003	0.82	0.0	0.04	16.64	0.00	2.026	8.75	3.19	3.1	96.8	0.1	2.40	0.56	0.72	0.83	2.19	6208	877	5	0	2	1	0	logfile
✔	8DL6	27497	2024-12-27	2022-07-07	3.0	4.19	2.98	3.5	0.008	1.09	0.0	0.06	14.53	0.00	2.169	7.37	3.22	6.9	92.1	0.9	-0.55	0.75	0.81	1.88	3.5	0.003	0.74	0.0	0.04	14.80	0.00	2.430	5.84	1.61	5.2	94.4	0.3	2.02	0.47	0.75	0.82	1.49	6171	874	5	0	1	1	0	logfile
✘	8DL7	27498	2024-12-28	2022-07-07	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6586	909	9	0	4	1	0	logfile
✔	7YER	33775	2024-12-31	2022-07-06	3.0	3.14	—	3.2	0.003	0.55	0.0	0.04	13.65	0.00	2.248	4.24	0.13	6.3	93.2	0.4	0.97	0.69	0.82	2.38	3.1	0.003	0.58	0.0	0.04	16.32	0.00	2.479	3.61	1.57	6.0	93.6	0.4	1.03	0.35	0.67	0.83	2.02	14313	1810	6	0	1	0	0	logfile
✔	7YET	33777	2024-12-30	2022-07-06	3.3	3.55	—	3.5	0.004	0.61	0.0	0.04	14.41	0.01	2.204	7.29	0.23	5.9	93.7	0.4	1.31	0.70	0.81	2.52	3.5	0.004	0.89	1.0	0.04	15.89	0.00	2.282	7.25	1.52	6.3	93.2	0.5	1.27	1.50	0.71	0.83	2.17	11862	1493	6	0	1	0	0	logfile
✔	8DKW	27492	2024-12-27	2022-07-06	3.09	3.64	3.05	3.6	0.006	0.71	1.0	0.06	13.84	0.00	2.097	8.61	0.41	6.2	93.8	0.0	-2.92	0.60	0.83	3.25	3.6	0.004	0.62	0.0	0.04	15.33	0.00	2.619	5.40	2.28	5.1	94.9	0.0	-0.19	0.36	0.55	0.83	2.89	4370	553	3	0	0	0	0	logfile

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