Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DD7	27335	2024-12-29	2022-06-17	3.3	3.57	3.30	3.4	0.005	0.94	0.0	0.05	17.63	0.01	2.272	11.26	0.44	6.7	93.3	0.0	-2.46	0.82	0.77	1.51	3.4	0.003	0.66	0.0	0.04	17.72	0.00	2.550	9.48	2.45	5.4	94.6	0.0	0.22	0.55	0.84	0.83	1.37	10370	1275	3	0	1	0	0	logfile
✔	7Y58	33612	2024-12-27	2022-06-16	3.8	4.04	3.79	4.1	0.005	0.88	3.0	0.05	18.11	0.02	2.068	14.85	3.38	10.0	90.0	0.0	-1.41	0.54	0.76	1.61	4.1	0.004	0.72	0.0	0.04	18.17	0.00	2.538	8.49	5.58	8.6	91.1	0.3	-0.41	0.60	0.60	0.82	1.55	5606	743	3	0	0	0	0	logfile
✔	7Y4W	33608	2024-12-26	2022-06-16	3.67	4.29	3.79	4.1	0.002	0.62	0.0	0.04	14.25	0.00	2.137	8.86	0.00	8.1	91.4	0.4	0.01	0.79	0.81	1.11	4.1	0.003	0.66	0.0	0.04	16.07	0.00	2.459	8.00	1.57	7.7	92.0	0.3	0.21	1.17	0.80	0.81	0.97	42776	5385	14	0	4	0	0	logfile
✘	8A64	15205	2024-12-27	2022-06-16	4.6	7.63	4.66	4.6	0.008	0.86	0.0	0.06	10.17	0.01	2.112	20.40	0.00	5.8	94.2	0.0	-1.55	0.91	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6737	1354	4	0	3	0	0	logfile
✔	8A5Y	15199	2024-12-29	2022-06-16	4.9	5.07	4.78	4.9	0.004	0.88	4.0	0.05	13.25	0.00	1.998	18.51	0.05	3.9	95.8	0.4	0.86	0.85	0.76	—	4.9	0.003	0.69	0.0	0.04	13.66	0.00	1.752	12.72	0.00	3.9	95.9	0.2	0.48	0.68	0.86	0.78	—	57866	7213	18	0	3	0	0	logfile
✔	7Y4S	33606	2024-12-27	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.003	0.60	0.0	0.04	15.20	0.00	2.516	6.79	3.23	2.2	97.8	0.0	2.36	1.58	0.71	0.77	2.45	4940	686	2	0	0	0	0	logfile
✔	7Y53	33611	2024-12-26	2022-06-16	3.61	4.15	3.76	4.0	0.004	0.71	0.0	0.05	15.24	0.01	2.119	10.11	0.00	8.6	91.0	0.4	-0.33	0.77	0.78	1.33	4.0	0.003	0.71	0.0	0.04	16.54	0.00	2.371	8.36	1.24	7.3	92.4	0.3	-0.05	1.19	0.78	0.80	1.00	42966	5382	16	0	12	0	0	logfile
✔	8DC2	27320	2024-12-28	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	19.79	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.1	0.004	0.66	0.0	0.04	20.97	0.00	2.446	10.91	1.93	3.7	96.3	0.0	0.78	0.37	0.83	0.85	2.68	7296	673	4	87	0	0	0	logfile
✔	8DBZ	27318	2024-12-28	2022-06-15	4.1	4.31	4.14	4.2	0.003	0.73	0.0	0.05	12.61	0.01	2.101	19.43	0.00	6.5	93.4	0.1	-1.42	0.62	0.62	—	4.2	0.003	0.75	0.0	0.05	13.34	0.01	2.302	14.52	0.00	4.7	95.3	0.0	-1.68	0.60	0.63	0.63	—	7960	1184	9	0	0	0	0	logfile
✔	8A5o	15179	2024-12-30	2022-06-15	3.2	3.27	3.09	3.2	0.016	1.87	2.0	0.10	14.34	0.01	1.981	1.08	0.72	3.8	96.0	0.2	-1.14	0.70	0.80	3.54	3.2	0.004	0.58	0.0	0.04	16.38	0.00	2.219	4.24	1.87	2.2	97.7	0.1	1.27	1.61	0.81	0.86	2.37	12571	1555	8	0	6	0	0	logfile
✔	8A5P	15180	2024-12-30	2022-06-15	3.4	4.19	3.47	3.6	0.011	1.65	3.0	0.10	17.87	0.02	1.816	2.29	0.90	3.3	96.6	0.1	-1.12	0.93	0.90	2.49	3.6	0.003	0.60	0.0	0.04	18.46	0.00	1.986	6.43	1.13	2.8	97.1	0.1	1.78	1.99	0.91	0.87	2.25	13937	1550	10	72	6	0	0	logfile
✘	8DBi	27285	2024-12-31	2022-06-14	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14496	1854	18	0	30	12	0	logfile
✘	8DBE	27281	2024-12-31	2022-06-14	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14982	1896	18	0	30	42	0	logfile
✔	8DBL	27289	2024-12-31	2022-06-14	2.4	2.55	2.52	2.5	0.011	0.82	0.0	0.06	16.54	0.00	1.885	7.60	2.67	3.3	96.7	0.0	0.14	0.67	0.83	4.21	2.5	0.003	0.53	0.0	0.05	16.16	0.00	1.977	7.06	2.42	2.6	97.4	0.0	0.92	0.40	0.66	0.86	3.89	14358	1854	18	0	24	12	0	logfile
✘	8DBC	27279	2024-12-30	2022-06-14	3.2	3.28	3.24	3.2	0.007	0.77	0.0	0.06	15.09	0.00	2.119	5.93	2.74	3.3	96.7	0.0	0.45	0.65	0.76	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14232	1854	12	0	12	0	0	logfile
✔	8A5A	15163	2024-12-30	2022-06-14	3.3	3.49	3.27	3.5	0.016	2.08	3.0	0.10	15.44	0.01	1.838	3.05	2.26	4.9	94.7	0.4	-2.22	0.56	0.66	3.59	3.5	0.003	0.58	0.0	0.04	16.24	0.00	1.992	4.50	2.06	2.5	97.3	0.1	1.07	1.22	0.73	0.83	2.34	13191	1629	8	0	6	0	0	logfile
✔	8A5D	15165	2024-12-30	2022-06-14	2.9	3.06	2.94	3.0	0.016	1.88	1.0	0.09	14.05	0.01	2.001	0.82	0.23	2.6	97.3	0.1	-0.81	0.72	0.80	4.42	3.0	0.003	0.58	0.0	0.04	16.25	0.00	2.017	4.00	1.92	2.7	97.3	0.0	1.68	0.52	0.80	0.85	3.31	12222	1519	8	0	6	0	0	logfile
✔	8DBG	27283	2024-12-31	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	17.53	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.004	0.57	0.0	0.05	16.82	0.00	1.963	4.47	1.91	4.0	96.0	0.0	0.89	0.31	0.74	0.91	5.77	14442	1854	18	0	30	12	0	logfile
✘	8DBK	27287	2024-12-31	2022-06-14	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14612	1868	18	0	30	12	0	logfile
✔	7Y48	33603	2024-12-28	2022-06-14	2.85	2.13	2.80	2.0	0.010	0.84	0.0	0.04	13.51	0.01	2.271	9.22	0.90	2.3	97.7	0.0	1.13	0.51	0.74	2.02	2.0	0.003	0.53	0.0	0.04	15.45	0.00	2.496	3.34	1.13	1.4	98.6	0.0	1.94	0.38	0.53	0.78	1.58	4324	567	2	0	2	0	0	logfile

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