Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D1L	27134	2024-12-31	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.69	0.00	2.222	4.07	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.54	0.0	0.04	16.80	0.00	2.310	4.95	1.30	2.0	98.0	0.0	1.86	0.41	0.63	0.86	4.08	16306	1880	10	0	46	0	0	logfile
✔	8A0E	15052	2024-12-30	2022-05-27	2.8	3.09	2.92	3.0	0.003	0.60	0.0	0.04	14.46	0.00	2.176	2.58	0.00	1.7	98.3	0.0	-0.22	0.76	0.89	4.52	3.0	0.002	0.52	0.0	0.04	15.36	0.00	2.467	2.45	0.70	1.8	98.2	0.0	0.60	0.30	0.75	0.90	4.00	12082	1526	9	0	7	0	0	logfile
✔	8D1K	27133	2024-12-31	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.33	0.01	2.287	6.59	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.003	0.55	0.0	0.04	17.30	0.00	2.284	4.40	1.06	1.4	98.6	0.0	1.43	0.38	0.65	0.88	3.70	16305	1880	10	0	45	0	0	logfile
✔	8D1M	27135	2024-12-31	2022-05-27	3.11	3.41	3.10	3.4	0.006	0.87	0.0	0.06	15.34	0.00	2.396	12.79	1.18	2.7	97.1	0.3	1.27	0.63	0.86	3.50	3.4	0.003	0.50	0.0	0.04	16.72	0.00	2.524	6.44	1.71	1.8	98.2	0.0	1.57	0.91	0.61	0.87	2.35	15590	1880	5	0	0	0	0	logfile
✘	8D1G	27129	2024-12-31	2022-05-27	2.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16201	1735	15	0	61	620	0	logfile
✔	7XW9	33494	2024-12-28	2022-05-26	2.7	2.10	2.82	1.8	0.005	0.68	0.0	0.05	12.26	0.01	2.167	6.26	0.00	3.5	96.5	0.0	0.37	0.78	0.77	3.77	1.8	0.004	0.63	0.0	0.04	15.43	0.00	2.531	5.75	2.45	3.5	96.5	0.0	1.11	1.49	0.80	0.80	3.42	8988	1143	7	0	1	0	0	logfile
✔	7XWo	33497	2024-12-28	2022-05-26	2.7	2.15	2.94	1.9	0.007	0.87	0.0	0.06	13.89	0.01	2.275	4.65	0.22	5.7	94.3	0.0	-4.88	0.76	0.76	3.57	2.0	0.003	0.64	0.0	0.04	16.06	0.00	2.479	7.44	3.26	3.4	96.6	0.0	-0.84	0.45	0.77	0.78	2.61	8725	1131	6	0	0	0	0	logfile
✔	7XW3	33490	2024-12-30	2022-05-26	4.04	4.31	4.11	4.2	0.009	1.24	4.0	0.07	16.20	0.01	2.218	16.13	2.51	8.4	91.5	0.1	-4.09	0.72	0.64	—	4.2	0.003	0.67	0.0	0.04	14.93	0.00	2.358	9.47	0.00	4.8	95.2	0.0	-0.95	1.35	0.71	0.63	—	12081	1502	1	0	0	0	0	logfile
✔	8A03	15046	2024-12-27	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.003	0.55	0.0	0.05	16.65	0.00	2.512	3.14	2.22	2.8	97.2	0.0	0.09	0.38	0.52	0.87	2.64	5511	717	3	0	0	0	0	logfile
✔	8A01	15044	2024-12-27	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	3.2	0.002	0.46	0.0	0.05	16.79	0.00	2.594	2.87	1.59	2.4	97.6	0.0	-0.19	0.24	0.47	0.87	2.60	5511	717	3	0	0	0	0	logfile
✔	7ZZY	15041	2024-12-28	2022-05-26	3.3	4.29	3.23	3.7	0.002	0.47	0.0	0.04	16.51	0.00	2.238	2.10	0.31	2.8	97.2	0.0	1.09	0.82	0.78	2.57	3.7	0.004	0.82	0.0	0.04	17.59	0.00	2.450	6.70	0.31	2.5	97.5	0.0	1.70	1.27	0.89	0.84	2.52	8784	1104	16	0	0	24	0	logfile
✔	8A06	15051	2024-12-27	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.62	0.0	0.05	17.34	0.00	2.613	4.67	9.49	4.1	95.9	0.0	-1.14	0.41	0.26	0.79	—	1185	147	1	0	0	0	0	logfile
✔	7XW2	33489	2024-12-28	2022-05-26	3.04	3.31	3.11	3.3	0.007	1.05	2.0	0.07	17.35	0.01	1.891	7.50	0.92	4.8	95.2	0.0	-3.30	0.66	0.71	1.93	3.3	0.003	0.62	0.0	0.04	18.41	0.01	2.317	6.84	1.69	4.2	95.8	0.0	-0.44	1.02	0.66	0.72	1.82	6992	725	3	54	2	0	0	logfile
✔	8D14	27115	2024-12-29	2022-05-26	2.51	2.45	2.49	2.6	0.004	0.57	0.0	0.05	13.46	0.00	2.064	5.73	0.32	1.1	98.9	0.0	1.45	0.66	0.87	4.65	2.5	0.003	0.60	0.0	0.04	16.26	0.00	1.919	4.01	1.38	0.9	99.1	0.0	1.65	0.36	0.65	0.88	4.55	9225	1113	9	0	9	426	0	logfile
✔	8A04	15047	2024-12-27	2022-05-26	3.2	3.28	3.22	3.3	0.004	0.60	0.0	0.05	14.53	0.00	2.113	4.31	0.00	1.5	98.5	0.0	-0.52	0.52	0.85	3.07	3.3	0.005	0.58	0.0	0.05	16.54	0.00	2.552	2.33	2.38	3.2	96.8	0.0	-0.49	0.30	0.50	0.86	2.77	5511	717	3	0	0	0	0	logfile
✔	8A02	15045	2024-12-27	2022-05-26	3.2	3.27	3.19	3.3	0.003	0.47	0.0	0.05	14.61	0.00	2.264	4.31	0.00	2.0	98.0	0.0	0.16	0.53	0.84	2.28	3.3	0.006	0.62	0.0	0.05	17.31	0.00	2.569	3.77	2.70	3.2	96.6	0.1	-0.45	0.28	0.51	0.86	2.62	5511	717	3	0	0	0	0	logfile
✔	8D13	27114	2024-12-29	2022-05-26	2.43	3.23	2.44	2.8	0.003	0.60	0.0	0.05	13.77	0.00	2.067	4.19	0.64	0.8	99.2	0.0	1.47	0.69	0.86	4.45	2.8	0.003	0.56	0.0	0.04	14.91	0.00	1.951	2.81	0.53	1.5	98.5	0.0	2.05	1.09	0.70	0.92	4.38	9216	1113	9	0	6	432	0	logfile
✔	8A05	15048	2024-12-27	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.48	0.0	0.05	14.62	0.00	2.624	2.02	1.20	1.1	98.9	0.0	0.38	0.21	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7XW5	33491	2024-12-30	2022-05-26	2.96	3.19	2.99	3.2	0.014	1.88	8.0	0.10	12.54	0.02	2.119	2.60	0.53	4.6	95.4	0.0	-0.98	0.61	0.73	3.28	3.2	0.003	0.66	0.0	0.04	14.02	0.00	2.512	5.64	2.11	2.3	97.7	0.0	0.74	0.74	0.68	0.80	2.33	12618	1522	10	0	27	0	0	logfile
✔	8A00	15043	2024-12-27	2022-05-26	2.6	2.71	2.57	2.7	0.002	0.58	0.0	0.05	14.42	0.00	2.321	2.79	0.00	6.5	93.5	0.0	-3.74	0.39	0.89	5.54	2.7	0.004	0.66	0.0	0.05	17.42	0.00	2.522	4.50	1.69	7.2	92.0	0.7	-3.84	0.94	0.40	0.91	5.64	3315	408	3	0	0	0	0	logfile

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