Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GQo	51510	2024-12-27	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.003	0.84	0.0	0.04	18.28	0.00	2.023	16.31	2.76	6.2	93.8	0.0	-0.96	0.58	0.81	0.80	0.24	6716	880	2	0	3	0	0	logfile
✔	9GNQ	51477	2024-12-28	2024-09-03	2.9	3.52	2.88	3.3	0.006	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.003	0.66	0.0	0.04	15.88	0.00	2.030	4.47	1.29	2.7	97.3	0.0	1.18	1.69	0.72	0.89	3.24	9309	1166	7	1	4	0	0	logfile
✔	9DGG	46823	2024-12-30	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.005	0.71	0.0	0.04	27.46	0.00	2.455	10.03	2.30	3.2	96.8	0.0	2.43	0.57	0.90	0.89	2.12	13339	959	14	286	4	0	0	logfile
✔	9JDV	61399	2024-12-27	2024-09-01	3.32	3.91	3.55	3.9	0.006	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.003	0.68	0.0	0.04	16.26	0.00	2.295	11.08	4.64	2.4	97.6	0.0	2.00	1.07	0.47	0.73	1.48	3311	435	2	0	1	1	0	logfile
✔	9DG3	46822	2024-12-30	2024-09-01	3.46	4.35	3.61	3.6	0.005	0.79	0.0	0.05	28.10	0.01	2.182	9.07	0.15	2.6	97.4	0.0	1.39	0.92	0.86	1.88	3.6	0.004	0.65	0.0	0.04	27.78	0.00	2.146	10.76	2.43	3.5	96.5	0.0	1.98	0.45	0.92	0.87	1.90	12553	860	13	292	1	0	0	logfile
✘	9JE0	61403	2024-12-27	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	435	2	0	1	1	0	logfile
✔	9GMW	51456	2024-12-31	2024-08-29	3.0	3.07	2.90	3.1	0.004	0.63	0.0	0.04	16.81	0.00	1.874	4.69	0.34	2.3	97.7	0.0	0.76	0.69	0.85	3.66	3.1	0.003	0.59	0.0	0.04	17.88	0.00	1.989	6.15	1.83	2.6	97.4	0.0	1.00	0.86	0.71	0.86	3.29	14541	1654	6	56	9	0	0	logfile
✔	9GMX	51457	2024-12-31	2024-08-29	2.82	2.87	2.73	2.9	0.007	0.71	1.0	0.05	16.92	0.01	1.888	4.13	0.54	3.2	96.8	0.0	0.15	0.70	0.86	3.74	2.9	0.003	0.57	0.0	0.04	17.76	0.00	2.035	5.94	1.56	2.1	97.9	0.0	0.97	2.34	0.72	0.87	2.78	14540	1654	7	56	8	0	0	logfile
✔	9DER	46794	2024-12-31	2024-08-29	3.9	5.17	4.02	4.0	0.003	0.56	0.0	0.05	15.30	0.00	2.080	5.89	0.90	3.7	96.3	0.0	-0.23	0.86	0.71	0.15	4.1	0.005	0.68	0.0	0.04	11.76	0.00	1.848	13.31	0.77	7.5	92.5	0.0	-0.96	1.80	0.89	0.76	0.30	14207	925	9	0	24	2	6843	logfile
✘	9DDE	46771	2024-12-31	2024-08-28	3.2	4.04	3.22	3.3	0.004	0.65	0.0	0.04	26.36	0.01	2.226	7.39	0.33	2.7	97.3	0.0	1.79	0.88	0.82	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15394	1147	18	324	5	0	0	logfile
✔	9JA6	61291	2024-12-27	2024-08-24	4.4	3.40	4.33	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.2	0.003	0.63	0.0	0.04	13.21	0.00	2.392	8.19	0.00	0.9	99.1	0.0	3.07	1.12	0.70	0.77	—	4880	588	4	0	0	0	0	logfile
✔	9DBY	46728	2024-12-30	2024-08-24	2.8	3.83	2.83	2.8	0.004	0.66	0.0	0.04	26.42	0.00	2.249	7.40	0.23	2.6	97.4	0.0	2.14	0.86	0.74	0.79	2.9	0.005	0.67	0.0	0.04	26.31	0.00	2.488	8.20	1.17	3.3	96.7	0.0	2.12	0.93	0.93	0.90	1.98	14368	1081	17	296	5	0	0	logfile
✔	9JA5	61290	2024-12-28	2024-08-24	2.7	3.43	2.71	3.3	0.014	1.15	0.0	0.06	14.30	0.01	2.117	13.83	0.00	12.9	87.1	0.0	-2.73	0.62	0.83	2.49	3.3	0.003	0.72	0.0	0.04	17.97	0.00	2.614	8.13	0.96	6.3	93.7	0.0	1.86	0.97	0.54	0.76	1.17	8469	1002	12	0	0	123	0	logfile
✔	9GK2	51414	2024-12-30	2024-08-23	2.5	3.25	2.53	2.9	0.004	0.74	8.0	0.04	19.42	0.01	2.075	9.60	4.15	4.1	95.6	0.3	1.13	0.61	0.68	1.58	3.0	0.004	0.70	0.0	0.04	19.00	0.00	2.367	7.78	3.54	3.5	96.3	0.2	1.75	0.94	0.60	0.71	1.56	60516	7776	18	0	0	0	0	logfile
✔	9DBQ	46724	2024-12-29	2024-08-23	2.9	3.52	2.91	3.5	0.003	0.56	0.0	0.04	12.63	0.00	2.057	2.92	0.10	2.2	97.8	0.0	1.15	0.67	0.73	1.85	3.5	0.003	0.64	0.0	0.04	14.95	0.00	2.417	8.04	2.40	2.9	97.1	0.0	1.97	1.40	0.68	0.74	1.35	10062	1182	4	0	20	0	0	logfile
✔	9D9L	46676	2024-12-27	2024-08-21	4.0	3.70	—	3.6	0.012	1.86	15.0	0.10	13.80	0.01	2.522	0.06	0.87	5.4	94.6	0.0	-1.53	0.50	0.65	—	3.6	0.003	0.58	1.0	0.04	15.37	0.00	2.211	3.74	2.12	4.1	95.9	0.0	-1.44	1.70	0.63	0.78	—	49929	3384	12	0	0	0	24441	logfile
✔	9D8P	46645	2024-12-27	2024-08-19	3.2	3.70	3.13	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.78	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.003	0.53	0.0	0.04	15.74	0.00	2.494	6.27	3.15	2.3	97.7	0.0	0.15	0.18	0.80	0.85	3.21	4073	537	4	0	0	0	0	logfile
✔	9D85	46630	2024-12-28	2024-08-18	3.59	3.91	3.62	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.004	0.82	0.0	0.05	21.58	0.00	2.194	18.45	2.93	5.1	94.9	0.0	-1.27	1.60	0.74	0.58	0.76	7201	739	5	65	0	0	0	logfile
✔	9D7K	46607	2024-12-27	2024-08-16	3.0	2.55	3.04	2.9	0.002	0.55	0.0	0.04	17.29	0.00	2.308	9.53	1.60	3.1	96.9	0.0	0.63	0.65	0.67	2.01	2.2	0.005	0.91	0.0	0.05	18.37	0.01	2.494	17.82	2.88	4.8	95.2	0.0	0.36	0.76	0.65	0.72	1.79	2843	359	1	0	0	0	0	logfile
✔	9GG6	51325	2024-12-27	2024-08-13	3.36	3.18	3.07	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.72	0.0	0.05	17.52	0.00	2.556	4.34	6.02	9.2	90.8	0.0	-2.30	0.53	0.40	0.89	4.37	2142	288	3	0	0	0	0	logfile

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