Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GG6	51325	2024-12-27	2024-08-13	3.36	3.18	3.07	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.72	0.0	0.05	17.52	0.00	2.556	4.34	6.02	9.2	90.8	0.0	-2.30	0.53	0.40	0.89	4.37	2142	288	3	0	0	0	0	logfile
✔	9GG0	51319	2024-12-27	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.58	0.0	0.05	15.92	0.00	2.577	2.45	1.47	2.2	97.8	0.0	-2.14	0.33	0.39	0.88	5.59	2385	321	3	0	0	0	0	logfile
✔	9GG1	51320	2024-12-27	2024-08-12	2.26	2.29	2.15	2.2	0.008	1.28	0.0	0.08	14.09	0.01	2.610	1.51	0.00	5.7	94.3	0.0	-2.57	0.45	0.92	7.85	2.2	0.004	0.69	0.0	0.05	15.90	0.00	2.495	3.02	0.81	3.6	95.5	1.0	-2.36	0.91	0.46	0.92	6.83	3232	428	4	0	0	0	0	logfile
✔	9J4X	61138	2024-12-27	2024-08-10	2.9	3.08	2.89	3.1	0.003	0.52	0.0	0.04	12.98	0.00	2.140	7.96	1.33	4.6	95.4	0.0	0.84	0.60	0.83	3.05	3.1	0.004	0.55	0.0	0.04	15.54	0.00	2.590	6.99	2.36	4.1	95.9	0.0	1.65	0.33	0.61	0.83	2.30	6588	764	4	0	4	0	0	logfile
✔	9J2N	61099	2024-12-27	2024-08-07	3.3	3.54	3.29	3.6	0.006	0.81	0.0	0.04	16.62	0.01	2.233	13.33	0.00	4.9	95.1	0.0	0.45	0.65	0.86	2.03	3.5	0.003	0.61	0.0	0.04	15.56	0.01	2.510	7.14	1.06	3.9	96.1	0.0	1.27	1.37	0.63	0.88	1.65	3584	468	2	0	1	0	0	logfile
✔	9CZN	46422	2024-12-27	2024-08-05	2.6	2.70	2.56	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.004	0.62	0.0	0.06	19.10	0.00	2.616	7.65	1.80	4.8	95.2	0.0	-1.06	3.21	0.56	0.88	5.85	5020	680	20	0	0	0	0	logfile
✔	9CZL	46420	2024-12-27	2024-08-05	2.9	3.25	2.64	3.2	0.023	1.95	0.0	0.09	9.53	0.01	2.463	0.52	0.00	5.6	94.4	0.0	-1.27	0.54	0.85	5.46	3.2	0.004	0.78	0.0	0.05	17.30	0.00	2.580	5.09	1.85	6.2	93.8	0.0	-1.60	1.68	0.44	0.84	4.93	5660	740	10	0	0	0	0	logfile
✔	9CZP	46424	2024-12-27	2024-08-05	3.3	3.59	3.27	3.5	0.021	2.01	0.0	0.11	10.68	0.01	2.402	0.40	0.00	7.0	93.0	0.0	-0.29	0.47	0.84	6.05	3.5	0.003	0.59	0.0	0.06	16.45	0.00	2.589	8.55	2.80	7.5	92.5	0.0	-1.30	1.62	0.44	0.84	4.57	5020	680	20	0	0	0	0	logfile
✔	9CZi	46417	2024-12-27	2024-08-05	3.0	3.03	2.88	3.0	0.021	1.92	0.0	0.10	9.10	0.01	2.435	0.79	0.00	7.0	93.0	0.0	-1.72	0.38	0.80	5.58	3.0	0.006	0.71	0.0	0.05	17.71	0.00	2.557	6.07	3.12	7.7	92.3	0.0	-2.24	0.54	0.47	0.87	4.52	5570	730	10	0	0	0	0	logfile
✔	9GCK	51231	2024-12-30	2024-08-02	3.7	4.29	3.78	3.0	0.015	1.89	4.0	0.12	21.02	0.01	1.954	10.65	0.77	5.0	94.7	0.2	-2.69	0.82	0.70	0.99	2.9	0.004	0.74	0.0	0.04	21.01	0.00	2.547	15.60	1.19	3.5	96.4	0.1	0.07	2.65	0.79	0.61	0.85	12298	1287	6	90	0	0	0	logfile
✔	9iZU	61042	2024-12-27	2024-08-01	3.7	4.91	3.71	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	4.0	0.005	0.92	0.0	0.05	13.81	0.01	2.505	29.25	1.96	6.5	93.5	0.0	-1.27	2.96	0.70	0.53	-0.28	7105	933	2	0	0	0	0	logfile
✔	9GC3	51228	2024-12-31	2024-08-01	2.46	3.18	2.52	2.9	0.013	1.54	3.0	0.11	18.38	0.01	2.311	1.26	0.00	2.2	97.8	0.0	-0.68	0.92	0.93	5.50	2.9	0.002	0.54	0.0	0.04	18.12	0.00	2.496	4.69	0.60	1.4	98.6	0.0	0.89	1.02	0.88	0.90	3.89	15046	1673	5	80	0	0	0	logfile
✔	9iZV	61043	2024-12-30	2024-08-01	3.02	4.37	3.10	3.6	0.002	0.48	0.0	0.04	8.21	0.00	1.991	5.46	0.20	2.0	98.0	0.0	-0.72	0.81	0.62	1.19	3.7	0.004	0.83	0.0	0.05	14.07	0.00	2.380	13.49	3.29	4.6	95.4	0.0	0.30	1.23	0.90	0.82	1.09	14118	1857	4	0	0	0	0	logfile
✔	9iZW	61044	2024-12-31	2024-08-01	3.12	3.31	3.20	3.3	0.003	0.53	1.0	0.04	14.73	0.00	1.895	3.90	1.34	4.6	95.4	0.0	-3.87	0.61	0.62	1.15	3.3	0.007	0.82	0.0	0.05	16.85	0.01	2.481	11.76	4.26	8.1	91.9	0.0	-1.59	0.72	0.73	0.81	1.27	15196	1996	4	0	0	0	0	logfile
✔	9iZX	61045	2024-12-30	2024-08-01	3.0	4.21	3.05	3.5	0.002	0.51	0.0	0.04	8.95	0.00	1.332	4.11	0.46	2.3	97.6	0.1	-0.23	0.85	0.69	1.91	3.6	0.004	0.90	0.0	0.05	13.74	0.01	2.523	11.48	1.97	3.6	96.3	0.1	0.85	1.19	0.90	0.86	1.77	14152	1857	4	0	0	0	0	logfile
✔	9CX9	45982	2024-12-27	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.003	0.64	0.0	0.04	16.26	0.00	2.560	5.61	5.45	3.8	96.2	0.0	-0.85	0.50	0.80	0.80	2.17	4631	609	5	0	0	0	0	logfile
✔	9CXJ	45993	2024-12-29	2024-07-31	3.1	3.43	3.24	3.5	0.004	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.62	0.0	0.04	16.51	0.00	2.011	9.18	1.51	3.2	96.8	0.0	1.54	0.36	0.65	0.75	2.07	10227	1237	6	0	4	0	0	logfile
✔	9CX3	45977	2024-12-27	2024-07-30	3.47	3.60	3.43	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.69	0.0	0.04	17.04	0.00	2.499	12.39	5.58	5.4	94.6	0.0	-1.80	0.58	0.74	0.71	2.02	5626	720	6	0	0	0	0	logfile
✘	9CX6	45979	2024-12-27	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile
✔	9GAW	13931	2024-12-31	2024-07-29	2.9	2.23	2.97	2.7	0.004	0.70	0.0	0.04	15.06	0.00	2.198	11.60	0.78	3.1	96.8	0.0	1.23	0.79	0.79	2.07	2.0	0.005	0.79	3.0	0.04	17.45	0.00	2.142	10.80	3.08	3.1	96.9	0.0	1.32	0.55	0.79	0.81	2.24	66640	8600	24	0	6	0	0	logfile

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