Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X2K	38015	2024-12-28	2023-11-09	3.03	3.27	3.09	3.3	0.005	0.73	2.0	0.05	14.07	0.00	1.909	7.35	0.77	4.9	95.0	0.1	-0.74	0.69	0.82	3.33	3.3	0.003	0.89	0.0	0.04	15.60	0.00	1.608	3.71	1.53	2.7	97.3	0.0	0.64	0.36	0.67	0.82	2.36	8570	1111	6	0	1	2	0	logfile
✔	8X2M	38017	2024-12-29	2023-11-09	3.31	4.05	3.32	3.5	0.003	0.63	0.0	0.04	16.67	0.00	2.137	9.92	0.51	5.0	95.0	0.0	-1.93	0.80	0.73	1.96	3.6	0.004	0.74	0.0	0.05	16.92	0.00	2.439	10.65	2.87	6.3	93.7	0.0	-1.57	1.32	0.82	0.81	2.45	10545	1306	6	0	0	0	0	logfile
✘	8X2L	38016	2024-12-28	2023-11-09	2.99	2.32	2.96	3.0	0.006	0.80	0.0	0.05	13.83	0.01	2.102	3.36	0.14	2.6	97.4	0.0	-0.31	0.74	0.76	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7099	885	6	0	9	1	0	logfile
✔	8R3K	18871	2024-12-31	2023-11-09	3.43	3.17	3.32	3.3	0.003	0.54	0.0	0.04	18.62	0.00	1.888	7.20	0.00	2.4	97.6	0.0	1.23	0.77	0.86	2.39	3.3	0.005	0.98	2.0	0.04	18.95	0.00	1.947	7.95	2.67	2.9	97.1	0.0	1.12	0.94	0.77	0.86	2.06	14767	1717	7	41	3	0	0	logfile
✔	8UX9	42719	2024-12-30	2023-11-09	3.2	2.33	3.15	3.0	0.003	0.50	0.0	0.05	16.21	0.00	2.231	8.56	0.34	5.8	94.1	0.1	0.65	0.77	0.79	3.80	3.0	0.004	0.53	0.0	0.05	16.24	0.00	2.395	6.99	2.03	3.9	96.0	0.1	1.08	0.23	0.77	0.80	3.80	14247	1104	5	0	2	0	6464	logfile
✔	8UX1	42685	2024-12-31	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.004	0.59	0.0	0.04	26.25	0.00	2.588	4.97	1.63	2.3	97.6	0.1	1.49	1.07	0.86	0.86	3.61	16395	1332	12	291	0	0	0	logfile
✔	8X1N	37997	2024-12-27	2023-11-08	3.31	3.46	3.37	3.5	0.003	0.59	0.0	0.04	16.86	0.00	2.251	2.85	0.00	2.4	97.6	0.0	2.01	0.72	0.84	2.46	3.5	0.003	0.53	0.0	0.04	16.19	0.00	2.580	3.16	2.52	3.2	96.8	0.0	2.36	0.35	0.66	0.82	1.27	4763	591	3	0	8	0	0	logfile
✘	8R34	18860	2024-12-28	2023-11-08	2.62	2.82	2.62	2.9	0.004	0.65	0.0	0.04	19.66	0.00	2.167	7.50	2.41	2.3	97.7	0.0	0.34	0.62	0.83	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7762	970	6	0	14	62	0	logfile
✔	8R35	18861	2024-12-28	2023-11-08	3.12	3.46	3.18	3.4	0.003	0.55	0.0	0.04	16.59	0.00	2.214	6.87	0.90	2.4	97.6	0.0	1.44	0.68	0.87	1.80	3.4	0.002	0.56	0.0	0.04	16.74	0.00	2.567	6.32	2.71	2.5	97.5	0.0	2.40	0.27	0.67	0.86	1.61	7150	953	2	0	0	0	0	logfile
✔	8R33	18859	2024-12-28	2023-11-08	2.29	2.45	2.30	2.4	0.003	0.56	0.0	0.04	18.61	0.00	2.171	8.27	2.39	2.0	98.0	0.0	1.52	0.67	0.86	4.80	2.4	0.003	0.59	0.0	0.04	17.47	0.00	2.573	6.41	1.01	2.0	98.0	0.0	2.35	0.25	0.66	0.86	4.50	8066	978	6	0	8	328	0	logfile
✔	8X1i	37996	2024-12-27	2023-11-07	4.0	4.14	2.43	4.1	0.012	1.87	1.0	0.10	15.72	0.01	1.891	0.00	2.93	5.2	94.8	0.0	-2.05	0.41	0.68	—	4.1	0.003	0.68	0.0	0.04	14.98	0.00	1.842	6.28	0.98	6.0	94.0	0.0	-0.24	1.92	0.43	0.77	—	5722	369	2	0	2	0	2840	logfile
✔	8X1C	37990	2024-12-29	2023-11-06	3.2	3.25	3.24	3.2	0.005	0.89	2.0	0.08	18.43	0.01	1.051	10.94	5.29	4.4	95.2	0.4	-2.42	0.67	0.54	0.97	3.2	0.004	0.72	1.0	0.04	19.64	0.00	2.298	10.30	2.37	5.7	94.2	0.1	0.00	1.62	0.80	0.83	1.34	56519	6347	35	294	10	0	0	logfile
✔	8UWC	42661	2024-12-28	2023-11-06	2.27	2.89	2.21	2.7	0.008	0.88	0.0	0.05	15.70	0.01	1.906	13.81	1.67	5.4	94.6	0.0	-1.61	0.72	0.69	2.89	2.7	0.004	0.67	0.0	0.05	16.25	0.00	2.358	8.21	1.67	4.5	95.5	0.0	-0.34	0.82	0.70	0.72	2.79	7767	494	2	0	1	97	3821	logfile
✔	8R2H	18842	2024-12-29	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	1.6	0.005	0.62	0.0	0.05	14.01	0.00	1.901	10.55	1.81	2.4	97.6	0.0	-0.04	0.38	0.75	0.73	3.05	11484	1394	4	0	4	0	0	logfile
✔	8X17	37986	2024-12-28	2023-11-06	3.19	3.42	3.20	3.4	0.005	0.56	0.0	0.04	12.62	0.00	2.053	3.79	0.32	1.6	98.4	0.0	-0.96	0.62	0.78	2.23	3.4	0.004	0.60	0.0	0.04	15.35	0.00	2.405	6.15	1.92	3.1	96.9	0.0	0.90	1.06	0.62	0.85	2.39	8753	1127	6	0	1	0	0	logfile
✔	8X19	37988	2024-12-29	2023-11-06	3.2	3.02	3.29	3.2	0.005	0.83	0.0	0.05	20.52	0.01	1.500	20.98	7.61	6.6	92.9	0.5	-2.03	0.59	0.48	1.30	3.1	0.003	0.69	0.0	0.04	20.58	0.00	1.922	9.84	2.36	5.2	94.6	0.2	0.07	2.12	0.73	0.78	1.07	56704	6372	34	294	11	0	0	logfile
✘	8X0W	37983	2024-12-28	2023-11-06	3.1	4.21	3.15	3.7	0.003	0.60	0.0	0.04	21.59	0.00	2.229	8.75	0.51	5.4	94.6	0.0	1.39	0.67	0.86	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7368	935	7	0	8	0	0	logfile
✔	8X16	37985	2024-12-28	2023-11-06	3.29	3.58	3.36	3.7	0.005	0.53	0.0	0.04	8.10	0.00	2.203	8.34	0.32	2.0	97.9	0.1	-1.18	0.56	0.60	1.26	3.6	0.003	0.71	0.0	0.04	14.63	0.00	2.521	10.53	3.52	3.5	96.5	0.0	0.39	1.17	0.63	0.79	1.69	8751	1126	6	0	1	0	0	logfile
✔	8X1B	37989	2024-12-27	2023-11-06	2.59	2.29	2.63	2.1	0.003	0.50	0.0	0.04	16.59	0.00	2.236	5.35	1.48	3.4	96.6	0.0	0.52	0.84	0.84	3.42	2.1	0.003	0.55	0.0	0.05	16.76	0.00	2.564	5.45	1.66	3.8	96.2	0.0	0.45	0.90	0.83	0.83	3.38	5106	658	1	0	0	0	0	logfile
✔	8UWL	42676	2024-12-28	2023-11-06	2.8	2.30	—	2.9	0.013	1.69	10.0	0.12	12.38	0.01	2.079	5.47	1.43	3.0	97.0	0.0	1.81	0.83	0.83	4.24	2.9	0.003	0.59	0.0	0.04	16.33	0.00	2.575	2.29	1.87	2.4	97.6	0.0	1.61	1.06	0.82	0.85	3.41	8626	1123	6	0	1	0	0	logfile

• ← previous
• Page 56 of 436
• next →