Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X1C	37990	2024-12-29	2023-11-06	3.2	3.25	3.24	3.2	0.005	0.89	2.0	0.08	18.43	0.01	1.051	10.94	5.29	4.4	95.2	0.4	-2.42	0.67	0.54	0.97	3.2	0.004	0.72	1.0	0.04	19.64	0.00	2.298	10.30	2.37	5.7	94.2	0.1	0.00	1.62	0.80	0.83	1.34	56519	6347	35	294	10	0	0	logfile
✔	8UW1	42636	2024-12-31	2023-11-05	2.88	3.37	2.99	3.1	0.008	0.73	0.0	0.05	27.27	0.00	2.273	3.06	0.00	2.4	97.6	0.0	0.97	0.83	0.82	2.55	3.1	0.004	0.58	0.0	0.03	27.85	0.00	2.514	4.25	1.71	2.5	97.5	0.0	2.23	0.58	0.85	0.89	2.97	12164	783	11	292	0	0	0	logfile
✔	8X0E	37976	2024-12-30	2023-11-04	3.4	3.82	3.30	3.5	0.007	0.99	0.0	0.06	16.10	0.01	2.191	9.40	1.29	8.0	91.8	0.2	-1.21	0.72	0.84	2.10	3.5	0.003	0.65	0.0	0.04	15.59	0.00	2.551	7.00	2.80	6.8	93.2	0.0	-0.56	0.41	0.74	0.87	1.81	12086	1530	4	0	4	0	0	logfile
✔	8X0G	37978	2024-12-30	2023-11-04	3.0	3.25	2.87	3.2	0.007	0.87	0.0	0.06	17.33	0.01	2.251	10.31	0.76	7.9	91.7	0.4	-1.70	0.71	0.86	2.78	3.2	0.004	0.66	0.0	0.04	16.88	0.00	2.526	7.70	2.95	6.1	93.9	0.0	-0.69	0.36	0.73	0.87	2.66	12129	1530	6	0	4	31	0	logfile
✔	8X0H	37979	2024-12-30	2023-11-04	4.1	4.27	3.91	4.1	0.004	0.69	0.0	0.05	14.99	0.00	2.051	17.13	0.00	10.8	89.1	0.1	-1.72	0.68	0.74	—	4.1	0.003	0.68	0.0	0.04	14.30	0.00	2.561	12.62	0.00	9.0	90.8	0.1	-1.54	0.33	0.67	0.73	—	12317	1558	4	0	4	0	0	logfile
✔	8UVU	42629	2024-12-30	2023-11-04	3.0	3.23	2.99	3.2	0.003	0.60	0.0	0.04	14.70	0.00	2.246	8.69	0.00	4.3	95.7	0.0	1.70	0.68	0.83	2.96	3.2	0.003	0.65	0.0	0.04	16.38	0.00	2.449	8.77	2.80	5.1	94.9	0.0	2.21	0.25	0.64	0.82	3.00	11976	1516	8	0	8	0	0	logfile
✔	8UVT	42628	2024-12-30	2023-11-04	2.9	3.16	2.88	3.1	0.003	0.47	0.0	0.04	15.28	0.00	2.233	8.27	0.00	3.7	96.3	0.0	2.31	0.67	0.83	2.02	3.1	0.003	0.56	0.0	0.04	17.10	0.00	2.582	8.83	2.00	3.8	96.2	0.0	3.18	0.38	0.67	0.84	1.85	12104	1544	4	0	0	0	0	logfile
✔	8X02	37965	2024-12-26	2023-11-03	3.3	3.45	3.29	3.4	0.007	0.97	0.0	0.06	10.26	0.01	2.355	1.06	0.00	5.2	94.8	0.0	-4.80	0.81	0.87	3.74	3.4	0.005	0.68	0.0	0.05	15.25	0.00	2.536	4.31	3.11	3.0	97.0	0.0	0.41	2.01	0.82	0.89	3.10	44160	5616	24	0	0	0	0	logfile
✔	8UVi	42621	2024-12-28	2023-11-03	2.53	2.73	2.54	2.8	0.004	0.75	4.0	0.05	14.60	0.01	2.093	9.69	0.72	2.1	97.9	0.0	1.41	0.60	0.80	2.95	2.8	0.003	0.67	0.0	0.04	14.81	0.01	2.237	10.81	2.15	1.5	98.5	0.0	2.38	5.06	0.62	0.84	2.85	8212	994	4	0	22	0	0	logfile
✘	8X06	37970	2024-12-28	2023-11-03	3.24	3.88	3.24	3.6	0.002	0.58	0.0	0.04	18.50	0.00	2.261	7.83	0.25	3.8	96.2	0.0	-0.94	0.77	0.76	1.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7053	869	4	0	0	0	0	logfile
✔	8UUX	42600	2024-12-30	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.004	0.92	1.0	0.05	16.31	0.01	2.106	2.82	3.47	5.8	94.1	0.1	-1.15	0.22	0.42	0.85	3.54	12084	1532	9	0	3	310	0	logfile
✔	8WZE	37950	2024-12-27	2023-11-02	3.32	3.49	3.24	3.5	0.005	0.75	0.0	0.05	15.54	0.01	2.186	5.72	0.78	4.0	95.8	0.2	-2.32	0.44	0.73	2.69	3.5	0.002	0.54	0.0	0.04	16.47	0.00	2.608	5.43	3.37	4.4	95.6	0.0	-1.04	0.40	0.57	0.82	2.46	3400	435	3	0	0	0	0	logfile
✔	8UVC	42615	2024-12-28	2023-11-02	2.09	2.64	2.05	2.5	0.005	0.73	2.0	0.05	14.95	0.01	2.262	7.73	0.47	0.5	99.5	0.0	2.48	0.65	0.88	3.59	2.5	0.003	0.57	0.0	0.04	14.47	0.00	2.261	6.49	0.81	1.1	98.9	0.0	2.92	0.90	0.67	0.91	3.85	8558	1026	4	0	22	0	0	logfile
✔	8UV3	42604	2024-12-30	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.003	0.70	0.0	0.05	16.03	0.01	1.922	2.99	1.97	5.4	94.6	0.0	-1.62	0.36	0.37	0.77	3.22	12069	1534	9	0	3	276	0	logfile
✔	8X01	37964	2024-12-30	2023-11-02	3.01	3.35	—	3.3	0.005	0.75	1.0	0.05	15.84	0.01	2.259	11.44	0.49	1.8	98.2	0.0	1.10	0.71	0.84	2.54	3.3	0.003	0.76	0.0	0.04	16.50	0.00	2.466	10.54	2.44	2.0	98.0	0.0	1.20	0.68	0.68	0.84	2.63	12742	1608	6	0	2	0	0	logfile
✔	8R23	18834	2024-12-30	2023-11-02	3.2	3.07	3.25	3.2	0.004	0.66	0.0	0.04	14.39	0.01	1.978	6.96	0.00	6.6	93.4	0.0	-5.33	0.80	0.83	2.57	3.2	0.003	0.60	0.0	0.04	16.24	0.00	2.071	5.05	1.58	4.4	95.6	0.0	-0.32	0.42	0.80	0.84	1.20	11979	1548	4	0	2	0	0	logfile
✔	8UUZ	42602	2024-12-27	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.004	0.93	0.0	0.05	16.67	0.00	2.504	33.61	3.48	6.6	93.4	0.0	-1.96	1.36	0.75	0.56	0.90	2258	300	2	0	0	0	0	logfile
✔	8WZX	37963	2024-12-28	2023-11-02	2.88	2.79	2.64	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.005	1.08	1.0	0.05	15.38	0.01	2.433	10.28	2.00	3.2	96.7	0.1	-4.33	0.43	0.55	0.89	5.60	7300	1020	20	0	0	0	0	logfile
✔	8UVF	42618	2024-12-28	2023-11-02	2.17	2.37	2.19	2.5	0.005	0.68	2.0	0.05	15.06	0.01	2.198	8.72	0.47	0.8	99.2	0.0	2.18	0.65	0.84	3.77	2.5	0.003	0.58	0.0	0.04	15.07	0.01	2.238	7.36	1.51	0.8	99.2	0.0	2.32	0.94	0.64	0.86	3.91	8520	1026	4	0	22	0	0	logfile
✔	8UVE	42617	2024-12-28	2023-11-02	2.6	3.11	2.70	3.0	0.004	0.62	0.0	0.04	14.48	0.01	2.230	9.16	0.00	1.5	98.5	0.0	2.23	0.58	0.83	2.45	3.0	0.003	0.60	0.0	0.04	14.65	0.01	2.231	7.95	1.65	1.5	98.5	0.0	2.75	0.35	0.55	0.82	2.30	8373	1010	4	0	22	0	0	logfile

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