Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WZX	37963	2024-12-28	2023-11-02	2.88	2.79	2.64	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.005	1.08	1.0	0.05	15.38	0.01	2.433	10.28	2.00	3.2	96.7	0.1	-4.33	0.43	0.55	0.89	5.60	7300	1020	20	0	0	0	0	logfile
✔	8R22	18833	2024-12-31	2023-11-02	3.9	3.57	3.81	3.6	0.004	0.67	0.0	0.04	14.65	0.01	2.098	10.00	0.00	9.3	90.7	0.0	-4.23	0.79	0.79	1.68	3.7	0.003	0.63	0.0	0.04	16.25	0.00	2.144	6.43	2.23	5.1	94.9	0.0	-0.64	0.51	0.78	0.78	1.09	15069	1950	5	0	1	0	0	logfile
✔	8UUE	42580	2024-12-28	2023-11-01	3.96	4.16	3.95	4.1	0.011	1.34	3.0	0.05	18.95	0.01	2.131	16.88	1.45	10.8	88.3	1.0	-2.50	0.79	0.81	1.60	4.1	0.004	0.76	0.0	0.05	19.02	0.01	2.398	9.38	6.10	10.6	88.5	0.9	-1.93	0.95	0.79	0.81	1.54	8984	1150	4	0	0	0	0	logfile
✔	8UUK	42588	2024-12-29	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.003	0.59	0.0	0.04	16.00	0.00	2.561	9.51	2.10	5.1	94.7	0.2	1.47	0.37	0.58	0.83	3.14	10242	1226	4	0	30	0	0	logfile
✔	8R1F	18809	2024-12-31	2023-11-01	3.67	3.92	3.69	3.9	0.008	0.98	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	3.9	0.003	0.58	0.0	0.04	15.02	0.00	2.163	5.17	1.49	2.9	97.1	0.0	1.19	2.08	0.70	0.68	1.26	16629	1025	5	0	3	0	8263	logfile
✔	8WZ3	37945	2024-12-31	2023-11-01	3.19	3.41	3.21	3.4	0.004	0.60	0.0	0.05	17.00	0.00	2.025	6.12	0.17	6.0	94.0	0.0	-4.35	0.76	0.82	2.98	3.4	0.004	0.67	0.0	0.04	16.25	0.00	2.575	5.28	3.12	5.7	94.3	0.0	-1.40	0.40	0.74	0.84	2.94	15741	2016	12	0	3	0	0	logfile
✔	8WZH	37952	2024-12-31	2023-11-01	3.7	3.32	3.68	3.6	0.013	1.38	0.0	0.07	15.63	0.00	2.311	6.48	0.93	4.8	95.2	0.0	-2.69	0.64	0.73	3.54	3.6	0.003	0.58	0.0	0.04	16.89	0.00	2.394	5.14	2.34	3.7	96.3	0.0	0.48	1.14	0.77	0.83	3.04	16368	1988	8	0	8	0	0	logfile
✔	8WZ4	37946	2024-12-27	2023-11-01	3.13	3.33	3.13	3.4	0.010	0.89	0.0	0.06	13.98	0.00	2.114	3.62	0.26	8.6	91.4	0.0	-4.05	0.68	0.79	3.83	3.4	0.003	0.63	0.0	0.04	16.94	0.00	2.484	5.65	5.41	4.9	95.1	0.0	-0.48	1.76	0.68	0.83	3.20	3441	439	3	0	0	0	0	logfile
✔	8WZ5	37947	2024-12-31	2023-11-01	3.51	3.76	3.47	3.8	0.004	0.87	3.0	0.05	15.77	0.01	1.637	7.38	0.83	4.8	95.2	0.0	-1.34	0.62	0.70	1.30	3.8	0.004	0.89	1.0	0.04	17.30	0.00	2.298	10.51	3.73	4.8	95.2	0.0	-1.58	0.98	0.71	0.76	1.42	15645	2013	9	0	0	0	0	logfile
✔	8WZK	37955	2024-12-31	2023-11-01	2.4	2.26	2.50	2.4	0.016	1.80	0.0	0.08	14.60	0.01	2.379	2.54	1.87	3.8	96.0	0.2	-1.19	0.51	0.67	5.64	2.4	0.003	0.70	0.0	0.05	15.97	0.01	2.543	5.54	1.99	2.8	97.2	0.0	0.39	1.18	0.71	0.81	4.30	16368	1988	8	0	8	0	0	logfile
✔	8WZ2	37944	2024-12-28	2023-11-01	2.73	3.66	2.90	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.4	0.006	1.25	2.0	0.05	15.69	0.00	2.001	15.09	1.80	2.5	97.5	0.0	0.51	4.13	0.70	0.85	2.96	9355	1202	6	0	0	0	0	logfile
✔	8WZJ	37954	2024-12-31	2023-11-01	2.7	2.61	2.75	2.7	0.014	1.68	0.0	0.08	14.34	0.00	2.368	1.63	0.99	4.0	95.8	0.2	-1.14	0.57	0.73	5.36	2.7	0.003	0.59	0.0	0.04	16.55	0.00	2.565	4.67	1.46	3.2	96.8	0.0	0.70	0.52	0.75	0.86	4.72	16368	1988	8	0	8	0	0	logfile
✔	8WYH	37928	2024-12-26	2023-10-31	3.0	3.17	3.03	3.1	0.013	1.86	3.0	0.11	24.31	0.05	2.200	41.88	35.11	24.6	62.8	12.5	-7.18	0.62	0.67	1.90	3.1	0.004	0.95	1.0	0.04	19.01	0.01	2.074	11.87	3.43	9.0	90.5	0.5	-2.52	3.61	0.66	0.69	2.22	38852	4880	6	0	0	0	0	logfile
✔	8WYS	37937	2024-12-27	2023-10-31	3.41	3.65	3.43	3.6	0.005	0.92	0.0	0.06	17.49	0.01	2.025	6.74	0.98	7.0	93.0	0.0	-3.17	0.56	0.77	0.84	3.6	0.005	0.71	0.0	0.05	17.48	0.00	2.219	11.63	3.50	8.6	91.4	0.0	-1.92	0.94	0.56	0.80	1.32	6340	805	8	0	6	0	0	logfile
✔	8UTM	42542	2024-12-30	2023-10-31	4.32	3.34	4.34	2.2	0.009	1.55	9.0	0.09	7.59	0.01	2.603	0.05	0.00	2.7	97.3	0.0	-1.95	0.75	0.74	—	2.2	0.005	0.66	0.0	0.04	4.71	0.00	2.360	1.52	0.00	4.9	95.1	0.0	0.72	1.81	0.79	0.77	—	14176	2856	8	0	0	0	0	logfile
✔	8UTF	42539	2024-12-29	2023-10-31	2.73	2.99	2.86	2.9	0.003	0.45	0.0	0.04	16.15	0.00	2.222	3.02	0.00	1.5	98.5	0.0	0.28	0.69	0.81	3.67	2.9	0.004	0.59	0.0	0.05	15.98	0.00	2.491	3.53	2.24	1.5	98.5	0.0	1.36	1.46	0.77	0.86	2.95	9827	1248	15	0	9	134	0	logfile
✔	8WYX	37940	2024-12-28	2023-10-31	3.5	3.89	3.49	3.4	0.005	0.57	0.0	0.04	13.61	0.00	2.029	10.00	0.20	3.2	96.8	0.0	-0.06	0.75	0.62	0.72	3.5	0.005	0.80	1.0	0.05	16.40	0.00	2.001	15.80	3.34	4.7	95.3	0.0	-0.63	1.57	0.79	0.69	1.11	8809	1070	2	0	1	0	0	logfile
✔	8WYi	37929	2024-12-27	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.003	0.84	0.0	0.04	19.03	0.00	2.361	10.47	6.88	11.0	88.1	0.9	-0.27	1.22	0.61	0.76	0.82	4659	589	8	0	0	0	0	logfile
✔	8UTR	42547	2024-12-29	2023-10-31	3.3	2.47	3.29	3.4	0.004	0.78	0.0	0.05	18.17	0.01	1.777	3.27	0.66	4.2	95.6	0.2	0.03	0.59	0.84	3.09	3.4	0.003	0.61	0.0	0.04	17.12	0.00	1.960	5.19	1.89	3.5	96.5	0.0	1.02	0.48	0.60	0.85	2.77	9792	1230	7	1	4	0	0	logfile
✔	8UTW	42552	2024-12-29	2023-10-31	3.4	2.15	3.43	4.0	0.005	0.87	1.0	0.05	19.46	0.01	1.938	6.12	1.89	6.5	93.3	0.2	-0.80	0.51	0.74	1.87	4.0	0.003	0.62	0.0	0.04	17.92	0.01	1.872	5.81	2.92	6.0	93.9	0.1	0.67	0.43	0.51	0.73	1.74	9787	1227	6	1	3	0	0	logfile

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